mRNA_H-paniculata_contig1648.3692.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1648.3692.1
Unique NamemRNA_H-paniculata_contig1648.3692.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1648.3692.1 vs. uniprot
Match: A0A6H5JGC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGC1_9PHAE)

HSP 1 Score: 235 bits (599), Expect = 6.520e-71
Identity = 147/312 (47.12%), Postives = 183/312 (58.65%), Query Frame = 1
Query:   97 ESLCLTRSSTIFHALLRIYGCPEHVPSSLVLHIVGADHREGNTSEQSQKMFEPLFLHLACRCENIRTLHMLFCGPNVAAPQHGAKHSF--QFTALNCSTDEVNSTNIFHGEQIGHSS-ADTKSSRTSMDKMDPSGAGDGAGQLAVTLQYISGLYHDVSFELDPGPDAMFLFNAGLWGYDDWTATLEYILLASRT-------GTRR----------PKWSQLTAVVVTSYCSEEAEDDMDTIEQLLCGGGGNSRSNPASLEVGAEDAAD-MGTVGWLWRPEINPHRSLLERRSACAVEGRRLFENHSWQAVRP 969
            ESL LTRS TIFHAL+RI+GC  ++PS LVLHI+GADHREG T +Q++ MF  L   L    E++  L  + CGPN+    HG +H+F           D+    NI   + +   S A T   RT+     P      AG L V L Y SGLYHDVS  L   PDA+FLFNAGLWGYDDW  TLEYIL   R        G R+          P+   +  VVVTSYCSEEA DDM+T+E++L    G+       +EV    A+  +G + WLW+PE+NPHRS + RR+ C VEGR LFENHSWQA+RP
Sbjct:   26 ESLRLTRSFTIFHALMRIFGCG-NLPSHLVLHILGADHREGTTPQQTRAMFVDLLQRLG-HDEHVLDLDFVLCGPNIPPHLHGTRHTFVHHHAPAAAKMDQ----NICGLDGVWQESPAATPGMRTTRCCDSPPST---AGALTVRLWYNSGLYHDVS-GLFATPDAIFLFNAGLWGYDDWEPTLEYILGCDRAACPSDHVGNRQASPPPIPATNPRPRNVAPVVVTSYCSEEASDDMETLERVLLAEDGSF------VEVSPGVASSPVGGLEWLWKPEVNPHRSRVPRRTECGVEGRALFENHSWQALRP 321          
BLAST of mRNA_H-paniculata_contig1648.3692.1 vs. uniprot
Match: D7FNZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNZ1_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 1.280e-48
Identity = 111/259 (42.86%), Postives = 139/259 (53.67%), Query Frame = 1
Query:  244 MFEPLFLHLACRCENIRTLHMLFCGPNVAAPQHGAKHSFQFTALNCSTDEVNSTNIFHGEQIGHSSADTKSSRTSMDKMDPSGAGDGAGQLAVTLQYISGLYHDVSFELDPGPDAMFLFNAGLWGYDDWTATLEYILLASRT-------GTRRPKWSQLTA----------VVVTSYCSEEAEDDMDTIEQLLCGGGGNSRSNPASLEVGAEDAADMGTVGWLWRPEINPHRSLLERRSACAVEGRRLFENHSWQAVRP 969
            MF  LF  L    E+++ L  +FCGPN+    HG +H+        +  +  +     G      +A      T      PS A    G L V L Y SGLYHDVS  L   PDA+FLFNAGLWGYDDW  TLE+IL   R        G R+     + A          VVVTSYCSEEA DDM+T+E++L G  GN       L  G   ++ +G + WLW+PE+NPHRS + RR+ C VEGR LFENHSWQA+RP
Sbjct:    1 MFVDLFQRLG-HDEHVQDLDFVFCGPNIPPHLHGTRHTLVHHHAPAAATKDQTICGLDGVWQESPAATPGMMTTRCCDSPPSTA----GALTVRLWYNSGLYHDVS-GLFATPDALFLFNAGLWGYDDWEPTLEHILGCDRAACPSDHVGNRQASPPPIPATKSGPRNAVPVVVTSYCSEEASDDMETLERVLLGEDGNF----VELSPGVA-SSPVGGLEWLWKPEVNPHRSRVPRRTECGVEGRALFENHSWQALRP 248          
BLAST of mRNA_H-paniculata_contig1648.3692.1 vs. uniprot
Match: K3WG78_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WG78_GLOUD)

HSP 1 Score: 91.7 bits (226), Expect = 1.820e-17
Identity = 75/274 (27.37%), Postives = 106/274 (38.69%), Query Frame = 1
Query:  154 GCPEHVPSSLVLHIVGADHREGNTSEQSQKMFEPLFLHLACRCENIRTLHMLFCGPNVAAPQHGAKHSFQFTALNCSTDEVNSTNIFHGEQIGHSSADTKSSRTSMDKMDPSGAGDGAGQLAVTLQYISGLYHDVSFE--LDPGPDAMFLFNAGLWGYDDWTATLEYILLASRTGTRRPKWSQLTAVVVTSYCSEEAEDDMDTIEQLLCGGGGNSRSNPASLEVGAEDAADMGTVGWLWRPEINPHRSLLERRSACAVEGRRLFENHSWQAVRP 969
             C     S L +H+VGADHREGNT  ++  +F+  F  LA       TL ++  GPN+A   H + +S  +T+               GE +   +A+     T                  + + Y  G + D   +  L   PD    FNAG+WGYD+W  +L  +L   +T            ++VTSY   EA DD D ++ L                             W WR E NPH SL  R +     G  L EN  W  + P
Sbjct:   46 ACSSSNDSVLTIHLVGADHREGNTGAETCVIFDTFFRALAEE-GRFATLQLVLVGPNIARLLHQSSYSRPWTSA------------LEGENMNIVAANAAEPST----------------CQIEISYFVGSFDDYFLDKALYLPPDLAVCFNAGIWGYDEWLPSLRLLLHTIKT-----------PLLVTSYNENEAMDDEDVLDTLA-------------------------PPQWFWRAEKNPHGSLRHRATNNNF-GSVLKENDYWMCLGP 253          
BLAST of mRNA_H-paniculata_contig1648.3692.1 vs. uniprot
Match: A0A1Z5K1M8_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K1M8_FISSO)

HSP 1 Score: 92.4 bits (228), Expect = 8.840e-17
Identity = 82/289 (28.37%), Postives = 116/289 (40.14%), Query Frame = 1
Query:  109 LTRSSTIFHALLRIYGCPEHVPSSLV---LHIVGADHREGNTSEQSQKMFEPLFLHLACRCENIRTLHMLFCGPNVAAPQHGAKHSFQFTALNCSTDEVNSTNIFHGEQIGHSSADTKSSRTSMDKMDPSGAGDGAGQLAVTLQYISGLYHDVSFELDPGPDAMFLFNAGLWGYDDWTATLEYILLASRTGTRRPKWSQLTAVVVTSYCSEEAEDDMDTIEQLLCGGGGNSRSNPASLEVGAEDAADMGTVGWLWRPEINPHRSLLERRSACAVEGRRLFENHSWQAVR 966
            L+RS+TI  AL+R+      V   L    +H++G D  E  T ++ +  FEPL   +  +     ++H+ F GP +     G   S     L+ S          H  QI  +S                                S LY D        PD +  FNAG+WGY DW AT+  I  A RT             VVT+Y  +EA+DD D IE  +                 +++  D+  +   W PEINP  S ++R +  A  GRR  EN +WQA R
Sbjct:  232 LSRSATIAEALVRLNVIGAKVFEDLWCLNVHVIGCDEVECKTDDRIRYYFEPLVRWIGAQHRGPTSMHLSFVGPGIV----GRDGSAVVNILSGSNS--------HRLQIAQASCH------------------------------SALYEDWLPSQTDKPDIIIAFNAGIWGYSDWCATIRTI--AERTVQ--------VPFVVTAYTLQEADDDYDVIEGEI-----------TKALAWSKEKIDLCCI---WEPEINPFASKIDRPTQSAPAGRRYRENQAWQAWR 454          
BLAST of mRNA_H-paniculata_contig1648.3692.1 vs. uniprot
Match: A0A485KGC5_9STRA (Aste57867_5070 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KGC5_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 5.440e-16
Identity = 79/291 (27.15%), Postives = 109/291 (37.46%), Query Frame = 1
Query:  133 HALLRIYGCPEHV--PSSLVLHIVGADHREGNTSEQSQKMFEPLF--LHLA---------CRCENIRTLHMLFCGPNVAAPQHGAKHSFQFTALNCSTDEVNSTNIFHGEQIGHSSADTKSSRTSMDKMDPSGAGDGAGQLAVTLQYISGLYHDVSFELDP---GPDAMFLFNAGLWGYDDWTATLEYILLASRTGTRRPKWSQLTAVVVTSYCSEEAEDDMDTIEQLLCGGGGNSRSNPASLEVGAEDAADMGTVGWLWRPEINPHRSLLERRSACAVEGRRLFENHSWQ 957
            HAL R +  P+ V  P  LVLHIVGAD REGN   ++ + F+ L    H A                 L ++  GPNVA   HG +    F + + S+                                        G  +V L Y + L+ +  +   P    P A+F FNAG+WGYD+W  T ++++                 ++VTSY   EA DD D I+ +                         G   W W+ E NP  SL  R S   +  R L EN  WQ
Sbjct:   36 HALKRKHKLPDEVDPPVRLVLHIVGADFREGNDVAETLRAFDQLITAFHTAPPPTAKGKPTPDHGYDELVLVMIGPNVARKLHGVEERVVFPSSSSSS----------------------------------------GGKSVRLLYATELWEE--YLAGPRYLSPSAVFCFNAGVWGYDEWLPTFQHMMCEDAA----------LPILVTSYNEFEAVDDADAIDDM------------------------EGPWVWRWQQEPNPFASLTPRSSQNTIANRVLHENAYWQ 250          
BLAST of mRNA_H-paniculata_contig1648.3692.1 vs. uniprot
Match: A0A067D2C9_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D2C9_SAPPC)

HSP 1 Score: 87.4 bits (215), Expect = 5.830e-16
Identity = 85/309 (27.51%), Postives = 118/309 (38.19%), Query Frame = 1
Query:   85 ADPIE--SLCLTRSSTIFHAL--LRIYGCP-----EHVPSS-------LVLHIVGADHREGNTSEQSQKMFEPLFLHLACRCENIRTLHMLFCGPNVAAPQHGAKHSFQFTALNCSTDEVNSTNIFHGEQIGHSSADTKSSRTSMDKMDPSGAGDGAGQLAVTLQYISGLYHDVSFELDPGPDAMFLFNAGLWGYDDWTATLEYILLASRTGTRRPKWSQLTAVVVTSYCSEEAEDDMDTIEQLLCGGGGNSRSNPASLEVGAEDAADMGTVGWLWRPEINPHRSLLERRSACAVEGRRLFENHSWQAV 963
            A PIE  S   +RS TI  AL   ++   P     +H  ++       LVLHIVGAD REG +   + K+FE L             L ++  GPNV    HG   +      + S   V ++ ++     G +                               Y+S             P A+F FNAG+WGYDDW  T   ++         PK    T +V+TSY + EA DD D ++ L                       +M  V W WR E N    L +R +   +  R L ENHSWQ +
Sbjct:   23 AAPIEERSYAHSRSMTILKALECAKLLSAPGVQHKKHKATTALSPKKKLVLHIVGADQREGTSVHATLKVFEVLLAAFGSADHGYDELVLVLIGPNVEQRLHGTAATSAIPGSDKSVCVVYASELWSEHLAGPT-------------------------------YVS-------------PSAIFCFNAGVWGYDDWLPTFALMM------AEEPK----TPIVITSYNALEAIDDADCLDDL-----------------------EMDFV-WRWRHEANAFLCLTQRATQHTLPDRVLNENHSWQCI 253          
BLAST of mRNA_H-paniculata_contig1648.3692.1 vs. uniprot
Match: A0A1V9ZX77_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZX77_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 8.720e-16
Identity = 71/266 (26.69%), Postives = 107/266 (40.23%), Query Frame = 1
Query:  175 SSLVLHIVGADHREGNTSEQSQKMFEPL---FLHLACRCENIRTLHMLFCGPNVAAPQHGAKHSFQFTALNCSTDEVNSTNIFHGEQIGHSSADTKSSRTSMDKMDPSGAGDGAGQLAVTLQYISGLYHDVSFELDPGPDAMFLFNAGLWGYDDWTATLEYILLASRTGTRRPKWSQLTAVVVTSYCSEEAEDDMDTIEQLLCGGGGNSRSNPASLEVGAEDAADMGTVGWLWRPEINPHRSLLERRSACAVEGRRLFENHSWQAV 963
            S LVLHIVGAD+REGN++ ++ ++FE L   F H+         L ++  GPNV    HG  H+              S  + +G +I  S                               Y++G  + V       P A+F FNAG+WGYD+W    + ++  +            T +++TSY + EA DD D +E +                       ++  V W W+ E NP   L +R S   +  R L EN  WQ +
Sbjct:   92 SKLVLHIVGADYREGNSAAETLRVFEQLIAAFGHVEQLDHGYTELVLVLVGPNVEQRLHGTVHTSPIEGTG------KSVRLIYGSEIWSS-------------------------------YLAGQNYMV-------PSAIFCFNAGVWGYDEWIPAFQLMMQEAIH----------TPIIITSYNALEASDDADCLEDI-----------------------EIPFV-WRWKHEPNPFLCLKQRASQHTLADRVLKENSCWQCI 279          
BLAST of mRNA_H-paniculata_contig1648.3692.1 vs. uniprot
Match: A0A1Z5JJV7_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JJV7_FISSO)

HSP 1 Score: 89.0 bits (219), Expect = 1.300e-15
Identity = 81/300 (27.00%), Postives = 121/300 (40.33%), Query Frame = 1
Query:  109 LTRSSTIFHALLRIYGCPEHVPSS---LVLHIVGADHREGNTSEQSQKMFEPLFLHLACRCENIRTLHMLFCGPNVAAPQHGAKHSFQFTALNCSTDEVNSTNIFHGE-----QIGHSSADTKSSRTSMDKMDPSGAGDGAGQLAVTLQYISGLYHD-VSFELDPGPDAMFLFNAGLWGYDDWTATLEYILLASRTGTRRPKWSQLTAVVVTSYCSEEAEDDMDTIEQ-----LLCGGGGNSRSNPASLEVGAEDAADMGTVGWLWRPEINPHRSLLERRSACAVEGRRLFENHSWQAVR 966
            L+RS+TI  AL+R+      V      L +H++G D  E  T ++ +  F+PL   +  +     ++H+   GP +      A                 S N+  G      QI H+S                                S LY + +S E D  PD +  FNAG+WGY DW AT+   ++A R              VVT+Y  +EA+DD D +E+     L C                +++  D+  +   W PEINP  S ++R +  A  GRR  EN +WQA R
Sbjct:  234 LSRSATIAEALVRLNVIGAKVFEDTWCLNVHVIGCDQVECETDDRIRTYFQPLVRWIGAQHRGPTSIHLSLVGPGIVERDGSA-----------------SVNLLSGSNSDRLQIAHASCH------------------------------SALYKEWLSSETDK-PDIIIAFNAGIWGYSDWCATIR--IIAER--------KLQVPFVVTAYTLQEADDDYDVLEEGIIKALAC----------------SKEKIDLCCI---WEPEINPFASKMDRPTQSAPAGRRYRENQAWQAWR 456          
BLAST of mRNA_H-paniculata_contig1648.3692.1 vs. uniprot
Match: A0A2D4CEU9_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CEU9_PYTIN)

HSP 1 Score: 84.7 bits (208), Expect = 4.060e-15
Identity = 60/201 (29.85%), Postives = 85/201 (42.29%), Query Frame = 1
Query:  175 SSLVLHIVGADHREGNTSEQSQKMFEPLFLHLACRCENIRTLHMLFCGPNVAAPQHGAKHSFQFTALNCSTDEVNSTNIFHGEQIGHSSADTKSSRTSMDKMDPSGAGDGAGQLAVTLQYISGLYHDVSFELDP--GPDAMFLFNAGLWGYDDWTATLEYILLASRTGTRRPKWSQLTAVVVTSYCSEEAEDDMDTIEQLL 771
            + L +H+VGADHREGN+  ++  +FE LF +LA        L ++  GPN+AA  H   HS Q T                               T  D  +P         + V L Y  G + D   E      PD    FNAG+WGYD W  TL+ ++   +T            ++VTSY + EA DD D ++  +
Sbjct:   42 AELTIHLVGADHREGNSMAETMLIFERLFQYLAVEDGRYTLLRLVLVGPNIAAKLH---HSSQTT-------------------------------THSDMREPLSVHQPLASIEVALSYYVGSFDDYYGETAQYVRPDLAVCFNAGIWGYDQWLPTLQLLVHTIQT-----------PLLVTSYNAHEASDDEDVLDDSV 197          
BLAST of mRNA_H-paniculata_contig1648.3692.1 vs. uniprot
Match: A0A8K1FAU4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FAU4_PYTOL)

HSP 1 Score: 82.0 bits (201), Expect = 4.370e-14
Identity = 59/203 (29.06%), Postives = 88/203 (43.35%), Query Frame = 1
Query:  169 VPSSLVLHIVGADHREGNTSEQSQKMFEPLFLHLACRCENIRTLHMLFCGPNVAAPQHGAKHSFQFTALNCSTDEVNSTNIFHGEQIGHSSADTKSSRTSMDKMDPSGAGDGAGQLAVTLQYISGLYHDVSFELDP--GPDAMFLFNAGLWGYDDWTATLEYILLASRTGTRRPKWSQLTAVVVTSYCSEEAEDDMDTIEQLL 771
            V  +L +H+VGADHREGNT  ++  +F+  F +LA       TL ++  GPN+A   H   H               ST+I        ++A  ++  T             A  + + L Y  G + D   E D    PD    FNAG+WGYD W  TL  ++   +T            +++TSY   EA DD D ++  +
Sbjct:   50 VDGTLTIHLVGADHREGNTVAETLGIFDQFFQYLAVDDRCYETLQLVLVGPNIAHKLHNDSHE--------------STHI-------DTTATLEAKAT-------------AAAIQIELSYYVGSFDDYYGETDQYVRPDLAVCFNAGIWGYDQWLPTLRLLVHQIQT-----------PLLITSYNENEASDDEDVLDDSV 207          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1648.3692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JGC1_9PHAE6.520e-7147.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNZ1_ECTSI1.280e-4842.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K3WG78_GLOUD1.820e-1727.37Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A1Z5K1M8_FISSO8.840e-1728.37Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A485KGC5_9STRA5.440e-1627.15Aste57867_5070 protein n=1 Tax=Aphanomyces stellat... [more]
A0A067D2C9_SAPPC5.830e-1627.51Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V9ZX77_9STRA8.720e-1626.69Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A1Z5JJV7_FISSO1.300e-1527.00Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A2D4CEU9_PYTIN4.060e-1529.85Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]
A0A8K1FAU4_PYTOL4.370e-1429.06Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1648contigH-paniculata_contig1648:19100..23676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.4
Seed ortholog evalue2.1e-41
Seed eggNOG ortholog2880.D7FNZ1
Hectar predicted targeting categoryother localisation
EggNOG OGs2AWSX@1,2RZZH@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_004890.2
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1201
Cds size939
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1648.3692.1prot_H-paniculata_contig1648.3692.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1648 19314..23628 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929313.9087448-UTR-H-paniculata_contig1648:19099..193131622929313.9087448-UTR-H-paniculata_contig1648:19099..19313Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1648 19100..19313 -
1691480811.3711953-UTR-H-paniculata_contig1648:19099..193131691480811.3711953-UTR-H-paniculata_contig1648:19099..19313Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1648 19100..19313 -
1622929313.965444-UTR-H-paniculata_contig1648:23628..236761622929313.965444-UTR-H-paniculata_contig1648:23628..23676Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1648 23629..23676 -
1691480811.4043756-UTR-H-paniculata_contig1648:23628..236761691480811.4043756-UTR-H-paniculata_contig1648:23628..23676Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1648 23629..23676 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929313.9343896-CDS-H-paniculata_contig1648:19313..200881622929313.9343896-CDS-H-paniculata_contig1648:19313..20088Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1648 19314..20088 -
1691480811.3826005-CDS-H-paniculata_contig1648:19313..200881691480811.3826005-CDS-H-paniculata_contig1648:19313..20088Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1648 19314..20088 -
1622929313.9513078-CDS-H-paniculata_contig1648:23464..236281622929313.9513078-CDS-H-paniculata_contig1648:23464..23628Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1648 23465..23628 -
1691480811.3943799-CDS-H-paniculata_contig1648:23464..236281691480811.3943799-CDS-H-paniculata_contig1648:23464..23628Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1648 23465..23628 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1648.3692.1

>prot_H-paniculata_contig1648.3692.1 ID=prot_H-paniculata_contig1648.3692.1|Name=mRNA_H-paniculata_contig1648.3692.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=313bp
MAEGKRTTAPWAADPIESLCLTRSSTIFHALLRIYGCPEHVPSSLVLHIV
GADHREGNTSEQSQKMFEPLFLHLACRCENIRTLHMLFCGPNVAAPQHGA
KHSFQFTALNCSTDEVNSTNIFHGEQIGHSSADTKSSRTSMDKMDPSGAG
DGAGQLAVTLQYISGLYHDVSFELDPGPDAMFLFNAGLWGYDDWTATLEY
ILLASRTGTRRPKWSQLTAVVVTSYCSEEAEDDMDTIEQLLCGGGGNSRS
NPASLEVGAEDAADMGTVGWLWRPEINPHRSLLERRSACAVEGRRLFENH
SWQAVRPPTMHT*
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mRNA from alignment at H-paniculata_contig1648:19100..23676-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1648.3692.1 ID=mRNA_H-paniculata_contig1648.3692.1|Name=mRNA_H-paniculata_contig1648.3692.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4577bp|location=Sequence derived from alignment at H-paniculata_contig1648:19100..23676- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAACCCTCGTGTCTTCGAGCAGGATAGTCTCTACTCTTGAGTTGGTGAAT GGCCGAGGGGAAACGTACGACTGCGCCTTGGGCAGCCGACCCAATCGAGA GCCTCTGCTTGACACGTAGCTCCACTATCTTTCACGCACTTCTGCGGATA TACGGCTGTCCCGAACATGTGCCATCTTCGCTCGTGCTTCACATCGTCGG TGCTGATCACAGGTCGGTGACGACGACATGTTTTTTTCGCAGATAGATCT ATGACGAAAGTGAATTATATCTTGTGTAAATGCCCCTCGGAACATGATAC CTATTTTCGTTTGAAAGAAATTACACTTTCGTTCGTTCAATCCCAGGCCC CCCTTTCTGGCTTAGAGGTAACCTCGACAAATCGATTTTGAGAGCATCTG TTTTCCGAAGGTCTCATTCGACTGACCTCAGTCCGATGTTAACTTTGTCG TGCGTATTTGTTTGATTGTTAATCTAGAGGGGCTCGTAACGCTTTTCCGT GGAGCCATGCCCAGCCTGTAACGCTCGAGGTTCCACTGTTGATAGACTCA TGCGGCGACAAAGACGAGCTACACAACCTCAGCTTATTCCAGACACTAGA CTAATCAACAGATTGTCAGGAGGGTCACTGGTTTAACCCTCCGCTTGTGG AACTAAGAACTAAGCTTGGGATTTCATTGTGTTGACAGTATGCACTTAGA CGTACACAACCCCACTATGAGCAAGCTGCTCTGGTCACGTAGCTAGAAAC TTATCTTTCCACTACCCTACAGGCACAACCCTGTAACGGTGACTGATGAG TGAGTTATGCTGATTTTAGTATTGTTTTCCAACGATTGGTGTCTGGGGAC TTGACGCTCACTTCCGTGCGTGTGATTGAGGTATCAACAAATACTGGGTA GAATACTTCGGGGCAGCTCTAGAGGAAAGTTCCCGACAGTGATAATGTGG GACTGGAATGTCCACCGTGGTATAACCTGATCCTCGTGGCTTGCTTCCAG AGGGCAGGTACTTCAACATCATTATTCCCCACCATACCAAGATGCCGCTC AGACCCGCGGTCTTGTAACCTGTATATCGCGGAAATGATAAGGAGCACTG TTTGTTTACTGTATAGGCATGGGAACGCCCCTAAAACCTGGCCTCCTCCC CTCTCTTCTTGCGGCTTAAAAACATTTCTTCTCCGTTTTTATTTATACTA CCGTGCGCAGCTATAACCATCCGCGGGTTTATTGATGTTGCCCTTCGCCT CTGTTCGTTTCAGAAGACTGATTTGAGTAGGGTCTAAGACAGTTTTATCG TAAACATGTAGTATCACCGAAGTTATAGGTTATGACAAGTCCCTATACGT CCCTCCTAGCGAATGCATGAAACTATGCGCGTAGTAGAACTAACCCATCT AGCGACGGTCTAAATCCAGCTCACGTTCCCTGTTAGTGGGTGAACAATCC TTCACTTGGTGAATTCTGCGACCGCGATGATAGGAAGAGATATCGAAGAA TCAAAAAGCAACATCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC TTTTGGTTCTGACACATATAGAATGATGGTGAAGCCGTTTGGTTGGTACG AGAGACAATGATACTAACAGACGGACTGCGTGGACAAAACGGCGCGTGTC ACATTCACAACATACAAGGCGAACACGGCATCCCACGTTGCAATAGGTAT TCCACGCTGAGTCGTCACTGCAAGGGTCACTTTTAGTGCCAAAAGGGGTC GCAGAGCATCCCACCCCTGTGTACCGCCATTTTGCACAGTTCGGATTGTC GCGGATGAAAAAAAGGCGATTTGCCGCATGATAGCTCGAAAAAATGTTGC AAATTTTAGCCACAATGGGCAATTGGGACTTTCGGGTTTTATTACGAAGA ATTTTAGATCCAAAGTTTTGGTGATTTCGAGCTGTCACGAGGGGAATTAA ACTGTTTTTTACCTGCGAAAAATTGCACTGTGCAAAAACGGCAGTACATG AAGGGGTTGTCTGTGGAGTTCAGTTTGTACTTGCACATTTGCCGCACGTG GTTCACTTAGGCCTGCGGTTATTGATCGGGAAAATGGATAATGTAACAAC CTTATACACATTCCAGGGCTCGCTTCGATGTAAAATAAGTAAAACCCTCG CTGCAGGGATCTTGGTGAGTAATGATGTCTGGAGGTGGGGATATTGCCCC CCCCCCCCCCCCCCCCCAGGAAATGGAACTTGGATGACCTCCGATTACAA GACGGACGGATTGCCTTGTATTCCTTGGAATATTTTACGCTAAAAAAAAT TCAATATAATTTTACGAAGGATTCTATTCTCAATGGTTCCGAAAAAAGGG AACACAAATAATGGTCTACTCAGGACGTTTGCTTCCTTCTGTCCCGTAGG TCCTTTACATTGAGTTGTAGCTTTTCGGGATGACCTTGGATTTCGAGAAG GGATTTTTCTTTGAATTCTTTGGAGTATTTTACAGCATTGGTCGAAATTT CGAAGAATTCTATAGAAATACCAATATTTTGATTTGAAACAATTGTTTCA ATTTTTTTTTGTTTCATATTGTATGCAGGGAATGATTCACGGCGCGTGAA ATCAGATTTAAACATGACCTTCTAAACTGCCAATTTGCTAAGCATAAATA AAAAGAACTACCAATTACAAAAGAAAATCCATCTGTACGTCAGCCGAACA TGTCACATGCTGTGTTCCATTCTTTCGGACCCACTTCTGAAGGGAATTTT ACATTAAATTCTTTGAAATTTCGCTCTTGATGTAAAATATTCCAAGGAAT TCAACGCAAAAATTCTCCTTGAAATCAGCTGTCATCTCGAAAAGCTACAA CTCAATATGGTAGCGTTATGGGACAGAGGGGAGTAAATGTCCTGAAAACA CCATATTGTGTGTTCCATTTTTCGGAACCATTTCAGAACAGACTTCTTCG TAGAATTCTTTGAAAATTCTTTGAAAATATATAATATCCATCCCACGGAC AACCACGAATACGTTAAAATATTTTTCACAAAAAACTGAAAGTAATCGCT TGAATTTCAGAATGAGGTTCTCTATTCTGTGCTCCGGACCATCCACGACT GCTATTAATACTCGTAAATCGAATGGACGGGGATGGGTACTTCATTCCTT GTGCCCGCTAATTCTGAAACTCAGGCATATACCTTCATCTTTTTGTGAAA AACGTTTGAAAATATTCGTATTTAACCGGAGGGTGAAAATATTCCAAGGA ATTCAACACAAAAGTCCGTCTTCTAATCAGAGGTCATCCCGAAAAGCTGC AACTTAATGGCCCAGACTTACGGCACCGACGGAGTATATACATTGAGAGG CAGGTCAACCGTTATGAGGTTCCCCTTGACCGAAGAAAACAGACAAACCA ATTGAATCTTGTGAGCAACAAACTCGCGGCTACATGACTTATGATATAGG GACTCGATAAGTTCTTACCATACCTCTGTGTCCCCCATGCCCGTCACAGC GCATGGCGTTACTCAATCTCTCAATTCCTGGGCAAATTTTATTTATTTCA CCAACGGTGTGTACCCTTTTGTTACCTTCCTAACGCAGAGAGGGCAACAC GTCGGAGCAAAGCCAAAAGATGTTCGAGCCGCTGTTTCTCCACCTCGCAT GCCGCTGCGAGAACATAAGAACGCTTCACATGCTCTTCTGTGGTCCGAAC GTCGCTGCGCCGCAGCACGGTGCGAAGCACAGCTTCCAATTCACCGCTTT AAACTGTAGTACCGACGAAGTCAACAGTACGAACATCTTTCATGGTGAAC AAATCGGACATTCTTCCGCTGACACGAAAAGCTCGAGGACAAGCATGGAC AAAATGGATCCTTCAGGTGCTGGCGACGGCGCCGGTCAACTCGCCGTCAC ACTACAGTATATCTCCGGTCTCTACCATGACGTTTCTTTTGAGCTGGATC CTGGCCCGGACGCCATGTTTCTCTTCAACGCCGGTCTATGGGGATACGAT GACTGGACCGCCACGCTGGAGTACATCCTGCTGGCCAGTCGAACTGGGAC TCGGCGACCAAAGTGGTCCCAGCTAACAGCCGTGGTTGTCACGAGCTACT GCTCGGAAGAGGCCGAAGATGACATGGATACCATAGAGCAATTATTGTGC GGTGGTGGTGGTAATAGCCGCAGCAATCCCGCATCGCTAGAAGTTGGGGC AGAGGATGCAGCTGATATGGGTACTGTAGGATGGCTATGGCGACCGGAGA TTAACCCTCACCGATCGCTTCTAGAGAGAAGGAGCGCGTGCGCTGTGGAG GGTAGGCGTTTGTTTGAGAATCACAGTTGGCAGGCGGTTCGACCACCTAC CATGCACACTTGAATAGAGGACTTCATTCGCTTGTGGAATGTGTGCAACT TAGAGACTCCCGCTCGTCAGTTTTTATGCCAGGGGCTCGTTGATATCTCA ACAACCCCTCCCTGGGATCGCTGTCGACGGGACAAGCACGACTTACAAAG AAGACAGCGCCACACTTGGCAGCGTTCTATACCACATAATATAGTCAACT AGAGGTTCGACATGAGCCGGAGCCTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig1648:19100..23676-

>mRNA_H-paniculata_contig1648.3692.1 ID=mRNA_H-paniculata_contig1648.3692.1|Name=mRNA_H-paniculata_contig1648.3692.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1878bp|location=Sequence derived from alignment at H-paniculata_contig1648:19100..23676- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCGAGGGGAAACGTACGACTGCGCCTTGGGCAGCCGACCCAATCGA
GAGCCTCTGCTTGACACGTAGCTCCACTATCTTTCACGCACTTCTGCGGA
TATACGGCTGTCCCGAACATGTGCCATCTTCGCTCGTGCTTCACATCGTC
GGTGCTGATCACAGATGGCCGAGGGGAAACGTACGACTGCGCCTTGGGCA
GCCGACCCAATCGAGAGCCTCTGCTTGACACGTAGCTCCACTATCTTTCA
CGCACTTCTGCGGATATACGGCTGTCCCGAACATGTGCCATCTTCGCTCG
TGCTTCACATCGTCGGTGCTGATCACAGAGAGGGCAACACGTCGGAGCAA
AGCCAAAAGATGTTCGAGCCGCTGTTTCTCCACCTCGCATGCCGCTGCGA
GAACATAAGAACGCTTCACATGCTCTTCTGTGGTCCGAACGTCGCTGCGC
CGCAGCACGGTGCGAAGCACAGCTTCCAATTCACCGCTTTAAACTGTAGT
ACCGACGAAGTCAACAGTACGAACATCTTTCATGGTGAACAAATCGGACA
TTCTTCCGCTGACACGAAAAGCTCGAGGACAAGCATGGACAAAATGGATC
CTTCAGGTGCTGGCGACGGCGCCGGTCAACTCGCCGTCACACTACAGTAT
ATCTCCGGTCTCTACCATGACGTTTCTTTTGAGCTGGATCCTGGCCCGGA
CGCCATGTTTCTCTTCAACGCCGGTCTATGGGGATACGATGACTGGACCG
CCACGCTGGAGTACATCCTGCTGGCCAGTCGAACTGGGACTCGGCGACCA
AAGTGGTCCCAGCTAACAGCCGTGGTTGTCACGAGCTACTGCTCGGAAGA
GGCCGAAGATGACATGGATACCATAGAGCAATTATTGTGCGGTGGTGGTG
GTAATAGCCGCAGCAATCCCGCATCGCTAGAAGTTGGGGCAGAGGATGCA
GCTGATATGGGTACTGTAGGATGGCTATGGCGACCGGAGATTAACCCTCA
CCGATCGCTTCTAGAGAGAAGGAGCGCGTGCGCTGTGGAGGGTAGGCGTT
TGTTTGAGAATCACAGTTGGCAGGCGGTTCGACCACCTACCATGCACACT
TGAAGAGGGCAACACGTCGGAGCAAAGCCAAAAGATGTTCGAGCCGCTGT
TTCTCCACCTCGCATGCCGCTGCGAGAACATAAGAACGCTTCACATGCTC
TTCTGTGGTCCGAACGTCGCTGCGCCGCAGCACGGTGCGAAGCACAGCTT
CCAATTCACCGCTTTAAACTGTAGTACCGACGAAGTCAACAGTACGAACA
TCTTTCATGGTGAACAAATCGGACATTCTTCCGCTGACACGAAAAGCTCG
AGGACAAGCATGGACAAAATGGATCCTTCAGGTGCTGGCGACGGCGCCGG
TCAACTCGCCGTCACACTACAGTATATCTCCGGTCTCTACCATGACGTTT
CTTTTGAGCTGGATCCTGGCCCGGACGCCATGTTTCTCTTCAACGCCGGT
CTATGGGGATACGATGACTGGACCGCCACGCTGGAGTACATCCTGCTGGC
CAGTCGAACTGGGACTCGGCGACCAAAGTGGTCCCAGCTAACAGCCGTGG
TTGTCACGAGCTACTGCTCGGAAGAGGCCGAAGATGACATGGATACCATA
GAGCAATTATTGTGCGGTGGTGGTGGTAATAGCCGCAGCAATCCCGCATC
GCTAGAAGTTGGGGCAGAGGATGCAGCTGATATGGGTACTGTAGGATGGC
TATGGCGACCGGAGATTAACCCTCACCGATCGCTTCTAGAGAGAAGGAGC
GCGTGCGCTGTGGAGGGTAGGCGTTTGTTTGAGAATCACAGTTGGCAGGC
GGTTCGACCACCTACCATGCACACTTGA
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