mRNA_H-paniculata_contig16468.3685.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16468.3685.1
Unique NamemRNA_H-paniculata_contig16468.3685.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16468.3685.1 vs. uniprot
Match: A0A6H5L0H9_9PHAE (Na_H_Exchanger domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H9_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.430e-10
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    7 VRHGYGTNWKQLTVLTYAGLRGAVGLTLALIVQVRCFGDQPIG 135
            ++HGYGTNW+Q+ VLTYAGLRGAVGLTLAL+VQ     D  +G
Sbjct:  393 LKHGYGTNWQQMLVLTYAGLRGAVGLTLALVVQENEAIDDDVG 435
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BLAST of mRNA_H-paniculata_contig16468.3685.1 vs. uniprot
Match: D7G372_ECTSI (Sodium/hydrogen exchanger family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G372_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 1.020e-7
Identity = 26/43 (60.47%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    7 VRHGYGTNWKQLTVLTYAGLRGAVGLTLALIVQVRCFGDQPIG 135
            ++HGYGTNW+Q  VLTYAG+RG  GLTL LIVQ     D  +G
Sbjct:  299 LKHGYGTNWQQKLVLTYAGVRGGGGLTLGLIVQENEAIDDDVG 341
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BLAST of mRNA_H-paniculata_contig16468.3685.1 vs. uniprot
Match: A0A7S2C182_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C182_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.610e-7
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:   10 RHGYGTNWKQLTVLTYAGLRGAVGLTLALIVQVR 111
            R GYG NWK+LT++ Y GLRGA+GL+LAL+VQV 
Sbjct:  499 RMGYGLNWKELTIIAYGGLRGAIGLSLALLVQVN 532
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BLAST of mRNA_H-paniculata_contig16468.3685.1 vs. uniprot
Match: A0A0L0G7M5_9EUKA (Na_H_Exchanger domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G7M5_9EUKA)

HSP 1 Score: 49.7 bits (117), Expect = 1.530e-5
Identity = 21/30 (70.00%), Postives = 26/30 (86.67%), Query Frame = 1 
Query:   16 GYGTNWKQLTVLTYAGLRGAVGLTLALIVQ 105
            GYG NW ++TV+TY GLRGA+GL LALIV+
Sbjct:  385 GYGLNWGEVTVMTYGGLRGAIGLALALIVE 414
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BLAST of mRNA_H-paniculata_contig16468.3685.1 vs. uniprot
Match: UPI000BA7FDB8 (LOW QUALITY PROTEIN: sodium/hydrogen exchanger 7-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA7FDB8)

HSP 1 Score: 47.8 bits (112), Expect = 7.300e-5
Identity = 22/32 (68.75%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:   10 RHGYGTNWKQLTVLTYAGLRGAVGLTLALIVQ 105
            R GYG NWK + VLT+ GLRGAVGL LAL+V 
Sbjct:  367 RLGYGLNWKWIVVLTWGGLRGAVGLALALLVS 398
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BLAST of mRNA_H-paniculata_contig16468.3685.1 vs. uniprot
Match: A0A0U9HQR6_KLENI (Na+/H+ antiporter n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HQR6_KLENI)

HSP 1 Score: 47.8 bits (112), Expect = 7.380e-5
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:   10 RHGYGTNWKQLTVLTYAGLRGAVGLTLALIVQ 105
            R GYG NWK+ +V+T+AGLRGAV LTLAL + 
Sbjct:  364 RMGYGLNWKEASVMTWAGLRGAVALTLALTID 395
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16468.3685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L0H9_9PHAE1.430e-1067.44Na_H_Exchanger domain-containing protein n=1 Tax=E... [more]
D7G372_ECTSI1.020e-760.47Sodium/hydrogen exchanger family n=1 Tax=Ectocarpu... [more]
A0A7S2C182_9STRA2.610e-767.65Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A0L0G7M5_9EUKA1.530e-570.00Na_H_Exchanger domain-containing protein n=1 Tax=S... [more]
UPI000BA7FDB87.300e-568.75LOW QUALITY PROTEIN: sodium/hydrogen exchanger 7-l... [more]
A0A0U9HQR6_KLENI7.380e-565.63Na+/H+ antiporter n=1 Tax=Klebsormidium nitens Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16468contigH-paniculata_contig16468:3782..3937 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929313.0779414-CDS-H-paniculata_contig16468:3781..39371622929313.0779414-CDS-H-paniculata_contig16468:3781..3937Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16468 3782..3937 -
1691480811.0061483-CDS-H-paniculata_contig16468:3781..39371691480811.0061483-CDS-H-paniculata_contig16468:3781..3937Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16468 3782..3937 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16468.3685.1prot_H-paniculata_contig16468.3685.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16468 3782..3937 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16468.3685.1

>prot_H-paniculata_contig16468.3685.1 ID=prot_H-paniculata_contig16468.3685.1|Name=mRNA_H-paniculata_contig16468.3685.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
YSVRHGYGTNWKQLTVLTYAGLRGAVGLTLALIVQVRCFGDQPIGLVTFI
IW
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mRNA from alignment at H-paniculata_contig16468:3782..3937-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16468.3685.1 ID=mRNA_H-paniculata_contig16468.3685.1|Name=mRNA_H-paniculata_contig16468.3685.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=156bp|location=Sequence derived from alignment at H-paniculata_contig16468:3782..3937- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATTCTGTCAGGCATGGTTACGGGACGAACTGGAAGCAGCTTACCGTGCT
CACATACGCAGGGCTGCGTGGCGCCGTGGGGCTTACGCTTGCGCTCATTG
TCCAGGTCCGTTGTTTTGGGGATCAGCCAATCGGTTTGGTTACCTTCATT
ATATGG
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Coding sequence (CDS) from alignment at H-paniculata_contig16468:3782..3937-

>mRNA_H-paniculata_contig16468.3685.1 ID=mRNA_H-paniculata_contig16468.3685.1|Name=mRNA_H-paniculata_contig16468.3685.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig16468:3782..3937- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATTCTGTCAGGCATGGTTACGGGACGAACTGGAAGCAGCTTACCGTGCT
CACATACGCAGGGCTGCGTGGCGCCGTGGGGCTTACGCTTGCGCTCATTG
TCCAGGTCCGTTGTTTTGGGGATCAGCCAATCGGTTTGGTTACCTTCATT
ATATGGTATTCTGTCAGGCATGGTTACGGGACGAACTGGAAGCAGCTTAC
CGTGCTCACATACGCAGGGCTGCGTGGCGCCGTGGGGCTTACGCTTGCGC
TCATTGTCCAGGTCCGTTGTTTTGGGGATCAGCCAATCGGTTTGGTTACC
TTCATTATATGG
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