mRNA_H-paniculata_contig16453.3681.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16453.3681.1
Unique NamemRNA_H-paniculata_contig16453.3681.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16453.3681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16453contigH-paniculata_contig16453:3585..4140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size556
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16453.3681.1prot_H-paniculata_contig16453.3681.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16453 3594..3989 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929312.772156-UTR-H-paniculata_contig16453:3584..35931622929312.772156-UTR-H-paniculata_contig16453:3584..3593Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16453 3585..3593 +
1691480810.874674-UTR-H-paniculata_contig16453:3584..35931691480810.874674-UTR-H-paniculata_contig16453:3584..3593Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16453 3585..3593 +
1622929312.799834-UTR-H-paniculata_contig16453:3989..41401622929312.799834-UTR-H-paniculata_contig16453:3989..4140Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16453 3990..4140 +
1691480810.8963315-UTR-H-paniculata_contig16453:3989..41401691480810.8963315-UTR-H-paniculata_contig16453:3989..4140Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16453 3990..4140 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929312.7848325-CDS-H-paniculata_contig16453:3593..39891622929312.7848325-CDS-H-paniculata_contig16453:3593..3989Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16453 3594..3989 +
1691480810.8834336-CDS-H-paniculata_contig16453:3593..39891691480810.8834336-CDS-H-paniculata_contig16453:3593..3989Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16453 3594..3989 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16453.3681.1

>prot_H-paniculata_contig16453.3681.1 ID=prot_H-paniculata_contig16453.3681.1|Name=mRNA_H-paniculata_contig16453.3681.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
MKRKKTRLPCVKWSTVSRLNIGTEDTCPVGVGVATIHHDRTACWDGSELA
IPYEFAAEELILHACEISRSLAAEESRVNPVLPELEERLAWGTGAQLLKI
CPGAYLVTSFLCAMIGMQAGGQIVFRSVRGV*
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mRNA from alignment at H-paniculata_contig16453:3585..4140+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16453.3681.1 ID=mRNA_H-paniculata_contig16453.3681.1|Name=mRNA_H-paniculata_contig16453.3681.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=556bp|location=Sequence derived from alignment at H-paniculata_contig16453:3585..4140+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTATACGGATGAAGAGGAAGAAGACGCGCCTGCCGTGTGTGAAATGGAG
TACGGTTTCGCGGCTAAATATAGGGACAGAGGATACGTGCCCTGTAGGGG
TGGGCGTTGCAACCATTCACCACGATCGTACGGCATGTTGGGATGGGTCT
GAACTGGCCATCCCGTACGAGTTCGCGGCAGAAGAGCTCATTTTACATGC
CTGTGAGATCAGCCGAAGTCTTGCGGCAGAAGAGAGCCGGGTCAATCCCG
TTCTGCCGGAGCTCGAGGAGCGGCTGGCATGGGGTACGGGGGCACAACTG
TTGAAGATATGCCCTGGGGCGTATTTGGTAACGTCGTTTCTGTGTGCAAT
GATTGGGATGCAGGCTGGAGGGCAGATTGTTTTCAGATCCGTCAGGGGTG
TCTAAGGGGAGAGCCGTGTGCGAGGTTTGGTTTTCTGAACGTGATTTGGC
CTCGAGTGCACTGATTTTTGAGTGCGGGGGACAGACCTATCTTTTTGATA
GGGGCAAGGAAGAAGCATTGTGATGTGCTGTGATTTGCCCGTCTGTACTG
TTTGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig16453:3585..4140+

>mRNA_H-paniculata_contig16453.3681.1 ID=mRNA_H-paniculata_contig16453.3681.1|Name=mRNA_H-paniculata_contig16453.3681.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig16453:3585..4140+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGAGGAAGAAGACGCGCCTGCCGTGTGTGAAATGGAGTACGGTTTC
GCGGCTAAATATAGGGACAGAGGATACGTGCCCTGTAGGGGTGGGCGTTG
CAACCATTCACCACGATCGTACGGCATGTTGGGATGGGTCTGAACTGGCC
ATCCCGTACGAGTTCGCGGCAGAAGAGCTCATTTTACATGCCTGTGAGAT
CAGCCGAAGTCTTGCGGCAGAAGAGAGCCGGGTCAATCCCGTTCTGCCGG
AGCTCGAGGAGCGGCTGGCATGGGGTACGGGGGCACAACTGTTGAAGATA
TGCCCTGGGGCGTATTTGGTAACGTCGTTTCTGTGTGCAATGATTGGGAT
GCAGGCTGGAGGGCAGATTGTTTTCAGATCCGTCAGGGGTGTCTAAATGA
AGAGGAAGAAGACGCGCCTGCCGTGTGTGAAATGGAGTACGGTTTCGCGG
CTAAATATAGGGACAGAGGATACGTGCCCTGTAGGGGTGGGCGTTGCAAC
CATTCACCACGATCGTACGGCATGTTGGGATGGGTCTGAACTGGCCATCC
CGTACGAGTTCGCGGCAGAAGAGCTCATTTTACATGCCTGTGAGATCAGC
CGAAGTCTTGCGGCAGAAGAGAGCCGGGTCAATCCCGTTCTGCCGGAGCT
CGAGGAGCGGCTGGCATGGGGTACGGGGGCACAACTGTTGAAGATATGCC
CTGGGGCGTATTTGGTAACGTCGTTTCTGTGTGCAATGATTGGGATGCAG
GCTGGAGGGCAGATTGTTTTCAGATCCGTCAGGGGTGTCTAA
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