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Homology
BLAST of mRNA_H-paniculata_contig10565.368.1 vs. uniprot
Match: D7FYV2_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV2_ECTSI) HSP 1 Score: 216 bits (549), Expect = 5.370e-59 Identity = 170/364 (46.70%), Postives = 195/364 (53.57%), Query Frame = 1
Query: 1 RAGQGQESPVEFDVLGFLSFAKADLRPFLRVLLRTKAFSTFLADARRWSP------VSMVPSASAGDDTHSTRAV-----RGSFKSGRRGDSEAGAGGSSLKQRGGRKEEAPDYSDISHRRQRSRERLKGSTVLGHGTATSSGARSGPSFDMKFPSGRGEIRRGSGTIHGSGTSIGGGGSNSKVEEEKGTAAAGLQRTSGSAGSAGEGFRHKLEHAITVRMQEQLQFHSMVGTERMGAYLLTYSTQSQPVAPP--IAGDFGLGGGLDGSLPGVPLSPTGANGGSGSGG-------LSRSSLAGFMASASRAPKVKKRWCVLDATRFTLFRTRSKTRVKSHVPLDPRAVALVTPHFTPSAARGGG 1032
RAG GQES VEFDVLGFLSFAKADLRPFLRVLLRT+AF+ FL DAR W+P S + + + G + +R + R RRG E + Q+G +AP RSRE + T + G RS S M P G RGS + H SGTS+ G G+GFR LE AIT RMQEQLQ S VGTERMGA+LLTY T SQ VAP A D G G G GSL G LSPTG +SR+++A A A+ APKV+KRWCVLDATR TLFRTR+KTRVK V LDP VALVTP FTP GGG
Sbjct: 4456 RAGHGQESDVEFDVLGFLSFAKADLRPFLRVLLRTRAFAAFLGDARGWTPSTATLQASQIAATAEGASSRLSRTIWAGEQREESARARRGRDEPSS------QQGQSGRQAPS---------RSREHRAAAAAPTTATENTQGRRSSDSGGMSAPGGE---ERGSSSRHASGTSVAG----------------------------GDGFRLNLERAITTRMQEQLQVQSAVGTERMGAFLLTYYTHSQHVAPQSSAAVDMGYGFG-QGSLGGA-LSPTGGXXXXXXXXXXXXXXXISRAAMA-IRARANGAPKVRKRWCVLDATRLTLFRTRTKTRVKESVQLDPSRVALVTPPFTPWGRAGGG 4770
BLAST of mRNA_H-paniculata_contig10565.368.1 vs. uniprot
Match: A0A6H5KKP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKP3_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 6.000e-15 Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 1
Query: 1 RAGQGQESPVEFDVLGFLSFAKADLRPFLRVLLRTKAFSTFLADAR 138
RAG GQES VEFDVLGFLSFA+ADLRPFLRVLLRTKAF+ FLADAR
Sbjct: 134 RAGHGQESDVEFDVLGFLSFAQADLRPFLRVLLRTKAFAAFLADAR 179
BLAST of mRNA_H-paniculata_contig10565.368.1 vs. uniprot
Match: A0A836CI77_9STRA (DENN domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI77_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 1.350e-7 Identity = 26/43 (60.47%), Postives = 37/43 (86.05%), Query Frame = 1
Query: 877 KVKKRWCVLDATRFTLFRTRSKTRVKSHVPLDPRAVALVTPHF 1005
KVK+RWC+LDAT+ + +R+RSKTRVK ++P +P +V+LVTP F
Sbjct: 4017 KVKRRWCILDATKLSYYRSRSKTRVKGYIPFEPASVSLVTPPF 4059
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 1043 |
| Cds size | 1041 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10565.368.1 >prot_H-paniculata_contig10565.368.1 ID=prot_H-paniculata_contig10565.368.1|Name=mRNA_H-paniculata_contig10565.368.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=347bp
RAGQGQESPVEFDVLGFLSFAKADLRPFLRVLLRTKAFSTFLADARRWSP
VSMVPSASAGDDTHSTRAVRGSFKSGRRGDSEAGAGGSSLKQRGGRKEEA
PDYSDISHRRQRSRERLKGSTVLGHGTATSSGARSGPSFDMKFPSGRGEI
RRGSGTIHGSGTSIGGGGSNSKVEEEKGTAAAGLQRTSGSAGSAGEGFRH
KLEHAITVRMQEQLQFHSMVGTERMGAYLLTYSTQSQPVAPPIAGDFGLG
GGLDGSLPGVPLSPTGANGGSGSGGLSRSSLAGFMASASRAPKVKKRWCV
LDATRFTLFRTRSKTRVKSHVPLDPRAVALVTPHFTPSAARGGGGAG back to topmRNA from alignment at H-paniculata_contig10565:5189..8205+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig10565.368.1 ID=mRNA_H-paniculata_contig10565.368.1|Name=mRNA_H-paniculata_contig10565.368.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3017bp|location=Sequence derived from alignment at H-paniculata_contig10565:5189..8205+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGCAGGGCAGGGGCAGGAAAGCCCCGTGGAGTTCGACGTGCTCGGGTT
TTTGTCGTTCGCGAAGGCTGACCTGAGGCCGTTCCTTAGGGTGCTTTTGA
GGACTAAGGCCTTCAGTACGTTTCTGGCGGATGCTAGGTAAACAAGTAGG
ATAGGATTACAAAACATGTGTGATGGGGTTCCATTGTGCATTTTGTTTAT
CTTGCTTTTTCGCCGTTGTGGTATAGGTGTTATTCGCCGTTGTGCGCTGA
TCGTCCATAGAACCAGGCGTCGTATGCTAGAGCCATCGGGGATGTTGTTG
TTGTTGTTGCTTTTGTTTTTGTCACACAGTGTGATAACGGTGTTGGTATT
ACAGACAACTTGACGATGTTTTGCGTTATGCGCAAGGGTTGAGCAATGTC
GCACTTACTGCGGACTGTAGTGCTGTATGTGTCATGCCATGCCATGCTAT
GCCATGCCACCCCCCAAATTGCAAAAGCAACGATATAGCCAGGTATAGTT
CATTCAGAACAATATACTACAGCGCACGGTGGGGTGGATATATGTATCGT
GCGCAATGCTATTTTGGCACGCTGAGCATTCACCCTCGCTGTCAAATTTG
ATCTCGTACGATATTTCGCGCCAACGCTATTCAGATTATGTGCAGTTCGT
ATTTCGCTTGGCATCGAAGACAACGCGGAATACTCTTTTTTTGTGCATTT
TTTTTGTGTATTGAGAGTCCAGTCTATCTATCTCATATTTTTTCTTTCTT
TCATGTTTAATGTTTCATCTTTCGTATTTCGTCTTTCATCTCTCACCTCT
CACTCTTTTTTCTCAATTCGCTGTCTCGTCCTTTGTATTTTGTCTGTATT
CTTGAAACCAAATGAATCAATCACGAATTCGTCAGGCGATGGAGCCCGGT
GTCGATGGTGCCGTCAGCGTCGGCTGGTGACGACACCCATTCGACACGTG
CTGTGAGAGGATCCTTCAAGTCTGGACGACGGGGTGACTCAGAGGCTGGC
GCGGGCGGGAGCAGCTTGAAGCAAAGGGGCGGTCGGAAAGAGGAGGCGCC
AGACTATTCGGATATTTCGCATAGGCGACAACGGTGAGAGATCGGTGGAG
CACTTATGACTATCTAGATATCATAAACGTGGATCCCTTCTCGGAAGATT
TCGGTTGGGTCGGAAATCATGATGTAGCTCATGGTGCAATACGTGGTACC
CCCTTCCCTCCGCCTCTCATGAAGCCGAATTATTGTTAGTATATACCGAA
CAATCATTTCATCAAGTGGAATAAAGCAATCATTATCTCGCTGTTGTGCA
CAAACTATTGTGCGTTGTGTTTGTTTCGCCCTGACGGTTTATGCTGTCCT
ACTCTAGGCGTGCGTTCACTCGAGGGTTTTACAAACGTACCTCTGTCATA
TATTTTAGTTGAATTGTGTAGTAAGTCTTTCAGTCCACTATATGACGGCT
GCTGTACTGCTACAACGCAAACACGTTTTTCTCGCGCTCCCACCTCGCCT
CCCCCTCGCCTGCCTGTTATCTCTTCTATCGCCTGTCTATCCGCCTATTG
CAATTCCAGGAGCAGAGAGAGACTCAAAGGTAGCACCGTCTTGGGTCACG
GCACCGCCACTTCAAGCGGTGCCCGCTCCGGACCCAGTTTCGACATGAAG
TTTCCGTCGGGTAGAGGGGAAATCAGGCGAGGCAGTGGCACCATTCACGG
CAGCGGGACCAGCATTGGCGGCGGCGGCAGTAATAGCAAGGTGGAAGAGG
AAAAGGGCACTGCCGCTGCTGGGTTACAGCGAACTAGCGGGAGCGCAGGG
AGTGCGGGAGAGGGCTTCCGGCACAAACTGGAGCATGCGATCACCGTACG
CATGCAGGAGCAGCTTCAGTTTCACAGGTGCGAGAGAAAGAGAGAGAGGT
TAGTTACACAAATATGTATTTAAAGATATGTATTTACACCATTTGGGAAC
CAGTCTGAACCTCGTAACGATCGATTGATCTATTTCGTCACGACCCGCTT
GTAAATAGTGACGATGCAATTTCAAATATAATGTAATGCACATGGAATCA
TGAGCGACAATTTGCTAGCCAGCCCTATATGACCATACGAAGCGTTGCGA
TGTGCGTGTATTTTGTACCTGGCAGTAGCCCATCCACGGAGGTATGCCTG
CAAGACCCGTATATAAAAACCTTGACATGGGGGGGGTCGACCAAAGAACC
GAATGCAGTCACGTTGAGAATGTATTGTAGTCCTCTTGGTCGGTTGACGT
CGTTAACTTGAATTTAACTTGTTTAGTCCTCGCCGTCCCTTTCCGTGGAT
TCGTATATTTTGTGCTACTTGACTACTTGATCTCTCGTCGCTCTCAGCAT
GGTTGGGACCGAGAGGATGGGTGCGTACTTGCTGACGTACTCTACCCAAA
GCCAACCCGTCGCTCCACCGATAGCTGGAGACTTCGGCTTGGGGGGCGGT
CTCGACGGGAGGTGAGTTTTTTGTCCTTTGTATTCCCTTGCCACCTTGTG
GTTTATGCAATGCGTTTTATCTGGAGATTTTTGTGGTCATTGTATGCCTA
GTGCAGCCGCTCTTGTGCTGTGTTTTTCACCCTTTTTACCATCAAATACA
CGAAGAGTACTTCGAAGTAGTGTAGTCGCTTCACTTAACTAGGGCTCCAC
TTTACTCCAGGGCCTCTCAACCGCCCCCCCCCCTCCCACGCGTTTGCCCC
CGATCGCTTCTTATCTTTCTTGACCTTCGTATTTCACACAGCCTTCCTGG
GGTACCGTTGTCCCCGACGGGAGCAAATGGCGGCAGCGGCAGCGGGGGTC
TTTCCCGATCATCTCTCGCGGGCTTCATGGCCTCAGCTTCTCGTGCACCG
AAGGTAAAGAAACGCTGGTGCGTGCTGGACGCCACGAGATTCACGTTGTT
CCGCACGCGCAGCAAGACTAGAGTTAAGAGCCATGTACCCCTCGATCCCA
GAGCGGTGGCTCTGGTGACGCCTCATTTTACGCCATCGGCAGCGCGTGGT
GGTGGGGGTGCCGGGGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig10565:5189..8205+ >mRNA_H-paniculata_contig10565.368.1 ID=mRNA_H-paniculata_contig10565.368.1|Name=mRNA_H-paniculata_contig10565.368.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2082bp|location=Sequence derived from alignment at H-paniculata_contig10565:5189..8205+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGCAGGGCAGGGGCAGGAAAGCCCCGTGGAGTTCGACGTGCTCGGGTT
TTTGTCGTTCGCGAAGGCTGACCTGAGGCCGTTCCTTAGGGTGCTTTTGA
GGACTAAGGCCTTCAGTACGTTTCTGGCGGATGCTAGCGGGCAGGGCAGG
GGCAGGAAAGCCCCGTGGAGTTCGACGTGCTCGGGTTTTTGTCGTTCGCG
AAGGCTGACCTGAGGCCGTTCCTTAGGGTGCTTTTGAGGACTAAGGCCTT
CAGTACGTTTCTGGCGGATGCTAGGCGATGGAGCCCGGTGTCGATGGTGC
CGTCAGCGTCGGCTGGTGACGACACCCATTCGACACGTGCTGTGAGAGGA
TCCTTCAAGTCTGGACGACGGGGTGACTCAGAGGCTGGCGCGGGCGGGAG
CAGCTTGAAGCAAAGGGGCGGTCGGAAAGAGGAGGCGCCAGACTATTCGG
ATATTTCGCATAGGCGACAACGGCGATGGAGCCCGGTGTCGATGGTGCCG
TCAGCGTCGGCTGGTGACGACACCCATTCGACACGTGCTGTGAGAGGATC
CTTCAAGTCTGGACGACGGGGTGACTCAGAGGCTGGCGCGGGCGGGAGCA
GCTTGAAGCAAAGGGGCGGTCGGAAAGAGGAGGCGCCAGACTATTCGGAT
ATTTCGCATAGGCGACAACGGAGCAGAGAGAGACTCAAAGGTAGCACCGT
CTTGGGTCACGGCACCGCCACTTCAAGCGGTGCCCGCTCCGGACCCAGTT
TCGACATGAAGTTTCCGTCGGGTAGAGGGGAAATCAGGCGAGGCAGTGGC
ACCATTCACGGCAGCGGGACCAGCATTGGCGGCGGCGGCAGTAATAGCAA
GGTGGAAGAGGAAAAGGGCACTGCCGCTGCTGGGTTACAGCGAACTAGCG
GGAGCGCAGGGAGTGCGGGAGAGGGCTTCCGGCACAAACTGGAGCATGCG
ATCACCGTACGCATGCAGGAGCAGCTTCAGTTTCACAGGAGCAGAGAGAG
ACTCAAAGGTAGCACCGTCTTGGGTCACGGCACCGCCACTTCAAGCGGTG
CCCGCTCCGGACCCAGTTTCGACATGAAGTTTCCGTCGGGTAGAGGGGAA
ATCAGGCGAGGCAGTGGCACCATTCACGGCAGCGGGACCAGCATTGGCGG
CGGCGGCAGTAATAGCAAGGTGGAAGAGGAAAAGGGCACTGCCGCTGCTG
GGTTACAGCGAACTAGCGGGAGCGCAGGGAGTGCGGGAGAGGGCTTCCGG
CACAAACTGGAGCATGCGATCACCGTACGCATGCAGGAGCAGCTTCAGTT
TCACAGCATGGTTGGGACCGAGAGGATGGGTGCGTACTTGCTGACGTACT
CTACCCAAAGCCAACCCGTCGCTCCACCGATAGCTGGAGACTTCGGCTTG
GGGGGCGGTCTCGACGGGAGCATGGTTGGGACCGAGAGGATGGGTGCGTA
CTTGCTGACGTACTCTACCCAAAGCCAACCCGTCGCTCCACCGATAGCTG
GAGACTTCGGCTTGGGGGGCGGTCTCGACGGGAGCCTTCCTGGGGTACCG
TTGTCCCCGACGGGAGCAAATGGCGGCAGCGGCAGCGGGGGTCTTTCCCG
ATCATCTCTCGCGGGCTTCATGGCCTCAGCTTCTCGTGCACCGAAGGTAA
AGAAACGCTGGTGCGTGCTGGACGCCACGAGATTCACGTTGTTCCGCACG
CGCAGCAAGACTAGAGTTAAGAGCCATGTACCCCTCGATCCCAGAGCGGT
GGCTCTGGTGACGCCTCATTTTACGCCATCGGCAGCGCGTGGTGGTGGGG
GTGCCGGGCCTTCCTGGGGTACCGTTGTCCCCGACGGGAGCAAATGGCGG
CAGCGGCAGCGGGGGTCTTTCCCGATCATCTCTCGCGGGCTTCATGGCCT
CAGCTTCTCGTGCACCGAAGGTAAAGAAACGCTGGTGCGTGCTGGACGCC
ACGAGATTCACGTTGTTCCGCACGCGCAGCAAGACTAGAGTTAAGAGCCA
TGTACCCCTCGATCCCAGAGCGGTGGCTCTGGTGACGCCTCATTTTACGC
CATCGGCAGCGCGTGGTGGTGGGGGTGCCGGG back to top
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