mRNA_H-paniculata_contig16447.3678.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16447.3678.1
Unique NamemRNA_H-paniculata_contig16447.3678.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16447.3678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16447contigH-paniculata_contig16447:5002..5303 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size303
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929312.2632165-CDS-H-paniculata_contig16447:5001..53011622929312.2632165-CDS-H-paniculata_contig16447:5001..5301Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16447 5002..5301 +
1691480810.660332-CDS-H-paniculata_contig16447:5001..53011691480810.660332-CDS-H-paniculata_contig16447:5001..5301Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16447 5002..5301 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16447.3678.1prot_H-paniculata_contig16447.3678.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16447 5002..5301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16447.3678.1

>prot_H-paniculata_contig16447.3678.1 ID=prot_H-paniculata_contig16447.3678.1|Name=mRNA_H-paniculata_contig16447.3678.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
RQSSLNTRHISTRGSYHGHSHVSMEEANIRLASHRSACPSSTPGCCPLWY
CYIPRRAVIASCLCFDIEYFTFAPLVHDITSHRRSSVLRCISPNLQRLQR
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mRNA from alignment at H-paniculata_contig16447:5002..5303+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16447.3678.1 ID=mRNA_H-paniculata_contig16447.3678.1|Name=mRNA_H-paniculata_contig16447.3678.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=302bp|location=Sequence derived from alignment at H-paniculata_contig16447:5002..5303+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACAATCGAGTCTCAACACCAGACATATATCTACCCGTGGTAGCTACCA
TGGTCATTCCCATGTTTCCATGGAGGAAGCCAATATACGCTTAGCAAGCC
ACCGCAGTGCTTGCCCCTCTAGTACACCCGGATGCTGTCCTTTGTGGTAC
TGCTATATCCCGCGTAGGGCGGTAATAGCATCTTGCTTGTGTTTCGATAT
TGAGTACTTTACATTTGCTCCCCTTGTACATGACATTACTTCACATCGTC
GATCCTCCGTACTGCGTTGTATTTCCCCCAATCTTCAGCGCCTTCAACGG
TG
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Coding sequence (CDS) from alignment at H-paniculata_contig16447:5002..5303+

>mRNA_H-paniculata_contig16447.3678.1 ID=mRNA_H-paniculata_contig16447.3678.1|Name=mRNA_H-paniculata_contig16447.3678.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig16447:5002..5303+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACAATCGAGTCTCAACACCAGACATATATCTACCCGTGGTAGCTACCA
TGGTCATTCCCATGTTTCCATGGAGGAAGCCAATATACGCTTAGCAAGCC
ACCGCAGTGCTTGCCCCTCTAGTACACCCGGATGCTGTCCTTTGTGGTAC
TGCTATATCCCGCGTAGGGCGGTAATAGCATCTTGCTTGTGTTTCGATAT
TGAGTACTTTACATTTGCTCCCCTTGTACATGACATTACTTCACATCGTC
GATCCTCCGTACTGCGTTGTATTTCCCCCAATCTTCAGCGCCTTCAACGG
CGACAATCGAGTCTCAACACCAGACATATATCTACCCGTGGTAGCTACCA
TGGTCATTCCCATGTTTCCATGGAGGAAGCCAATATACGCTTAGCAAGCC
ACCGCAGTGCTTGCCCCTCTAGTACACCCGGATGCTGTCCTTTGTGGTAC
TGCTATATCCCGCGTAGGGCGGTAATAGCATCTTGCTTGTGTTTCGATAT
TGAGTACTTTACATTTGCTCCCCTTGTACATGACATTACTTCACATCGTC
GATCCTCCGTACTGCGTTGTATTTCCCCCAATCTTCAGCGCCTTCAACGG
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