mRNA_H-paniculata_contig16410.3664.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16410.3664.1
Unique NamemRNA_H-paniculata_contig16410.3664.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16410.3664.1 vs. uniprot
Match: UPI0006E3F5EA (enoyl-CoA hydratase n=1 Tax=Streptomyces hirsutus TaxID=35620 RepID=UPI0006E3F5EA)

HSP 1 Score: 88.2 bits (217), Expect = 2.870e-18
Identity = 46/70 (65.71%), Postives = 59/70 (84.29%), Query Frame = 3 
Query:  237 LTATADLK--YENVLVQQKERVGIIQLNRPKALNALNSALITDVCAAAEALDQDSGIGALVLTGSEKAFA 440
            +TAT + +  YEN++V+++ RVGII LNRP+ALNALN+AL+T+V AAA   DQD GIGA+VLTGSEKAFA
Sbjct:    1 MTATPEQQNGYENIIVERRGRVGIITLNRPQALNALNAALMTEVVAAATEFDQDHGIGAIVLTGSEKAFA 70
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BLAST of mRNA_H-paniculata_contig16410.3664.1 vs. uniprot
Match: D8LKM6_ECTSI (Enoyl-CoA hydratase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKM6_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 3.150e-18
Identity = 41/69 (59.42%), Postives = 59/69 (85.51%), Query Frame = 3 
Query:  234 SLTATADLKYENVLVQQKERVGIIQLNRPKALNALNSALITDVCAAAEALDQDSGIGALVLTGSEKAFA 440
            S +++++ K++NVLV+++ERVGI+  NRPKALNALNS LI D+C+AAEA + D  +GA+VLTGS++AFA
Sbjct:   30 SSSSSSNAKFDNVLVERRERVGIVTFNRPKALNALNSGLIQDICSAAEAFEGDPEVGAIVLTGSDRAFA 98
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BLAST of mRNA_H-paniculata_contig16410.3664.1 vs. uniprot
Match: A0A1Y2BSA1_9FUNG (ClpP/crotonase n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2BSA1_9FUNG)

HSP 1 Score: 87.4 bits (215), Expect = 6.170e-18
Identity = 44/73 (60.27%), Postives = 56/73 (76.71%), Query Frame = 3 
Query:  222 LSRRSLTATADLKYENVLVQQKERVGIIQLNRPKALNALNSALITDVCAAAEALDQDSGIGALVLTGSEKAFA 440
            L RR  + +A   YENVLV+Q+ RVG++ LNRPKALNALNSAL+ D+  A  A D+D  +GA+V+TGSEKAFA
Sbjct:    4 LRRRLFSTSASATYENVLVEQRGRVGVVTLNRPKALNALNSALMKDLNEALRAFDKDDSVGAIVVTGSEKAFA 76
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BLAST of mRNA_H-paniculata_contig16410.3664.1 vs. uniprot
Match: UPI001E3DCFD0 (enoyl-CoA hydratase n=1 Tax=Subtercola sp. AK-R2A1-2 TaxID=2895559 RepID=UPI001E3DCFD0)

HSP 1 Score: 86.3 bits (212), Expect = 1.370e-17
Identity = 42/60 (70.00%), Postives = 52/60 (86.67%), Query Frame = 3 
Query:  261 YENVLVQQKERVGIIQLNRPKALNALNSALITDVCAAAEALDQDSGIGALVLTGSEKAFA 440
            YEN++V+Q+ RVGII LNRPKALNALN+AL+ +V  AA A D DSG+GA+VLTGSE+AFA
Sbjct:    4 YENIIVEQRGRVGIITLNRPKALNALNTALMLEVVEAATAFDDDSGVGAIVLTGSERAFA 63
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BLAST of mRNA_H-paniculata_contig16410.3664.1 vs. uniprot
Match: A0A839U037_9HYPH (Enoyl-CoA hydratase n=3 Tax=Phyllobacterium TaxID=28100 RepID=A0A839U037_9HYPH)

HSP 1 Score: 85.9 bits (211), Expect = 1.880e-17
Identity = 41/62 (66.13%), Postives = 53/62 (85.48%), Query Frame = 3 
Query:  255 LKYENVLVQQKERVGIIQLNRPKALNALNSALITDVCAAAEALDQDSGIGALVLTGSEKAFA 440
            + YEN++V+ +E+VG IQLNRPKALNALNSAL+ ++  A EA D+D+ IGA+VLTGSEKAFA
Sbjct:    1 MTYENIIVETREKVGFIQLNRPKALNALNSALLAELAEALEAFDKDNTIGAIVLTGSEKAFA 62
[Close]
BLAST of mRNA_H-paniculata_contig16410.3664.1 vs. uniprot
Match: A0A1X1XNJ8_9MYCO (Enoyl-CoA hydratase n=3 Tax=Mycobacterium kubicae TaxID=120959 RepID=A0A1X1XNJ8_9MYCO)

HSP 1 Score: 85.5 bits (210), Expect = 2.630e-17
Identity = 42/62 (67.74%), Postives = 53/62 (85.48%), Query Frame = 3 
Query:  255 LKYENVLVQQKERVGIIQLNRPKALNALNSALITDVCAAAEALDQDSGIGALVLTGSEKAFA 440
            + YE +LV++ ERVGII LNRPKALNALNS ++ +V +AA  LD+D+GIGA+VLTGSEKAFA
Sbjct:    1 MSYETILVERDERVGIITLNRPKALNALNSQVMVEVTSAATELDEDAGIGAIVLTGSEKAFA 62
[Close]
BLAST of mRNA_H-paniculata_contig16410.3664.1 vs. uniprot
Match: A0A3E0VWR3_9MICO (Enoyl-CoA hydratase n=1 Tax=Subtercola boreus TaxID=120213 RepID=A0A3E0VWR3_9MICO)

HSP 1 Score: 85.5 bits (210), Expect = 2.680e-17
Identity = 42/60 (70.00%), Postives = 52/60 (86.67%), Query Frame = 3 
Query:  261 YENVLVQQKERVGIIQLNRPKALNALNSALITDVCAAAEALDQDSGIGALVLTGSEKAFA 440
            YEN+LV+++ RVG+I LNRPKALNALN+AL+ DV AAAE  D D GIGA+VLTGS++AFA
Sbjct:    4 YENILVERRGRVGLITLNRPKALNALNAALMRDVVAAAEEFDADRGIGAIVLTGSDRAFA 63
[Close]
BLAST of mRNA_H-paniculata_contig16410.3664.1 vs. uniprot
Match: UPI001C3D6CBF (enoyl-CoA hydratase n=1 Tax=Pinisolibacter aquiterrae TaxID=2815579 RepID=UPI001C3D6CBF)

HSP 1 Score: 84.7 bits (208), Expect = 5.140e-17
Identity = 41/62 (66.13%), Postives = 53/62 (85.48%), Query Frame = 3 
Query:  255 LKYENVLVQQKERVGIIQLNRPKALNALNSALITDVCAAAEALDQDSGIGALVLTGSEKAFA 440
            + YEN+LV+ + RVG+I LNRPKALNALNSAL+ +V AA +A + D+GIGA+V+TGSEKAFA
Sbjct:    1 MAYENILVETRGRVGLITLNRPKALNALNSALMAEVSAALDAFEADAGIGAIVITGSEKAFA 62
[Close]
BLAST of mRNA_H-paniculata_contig16410.3664.1 vs. uniprot
Match: A0A521MQY0_9MICO (Enoyl-CoA hydratase n=1 Tax=Herbiconiux sp. TaxID=1871186 RepID=A0A521MQY0_9MICO)

HSP 1 Score: 84.3 bits (207), Expect = 7.300e-17
Identity = 42/60 (70.00%), Postives = 51/60 (85.00%), Query Frame = 3 
Query:  261 YENVLVQQKERVGIIQLNRPKALNALNSALITDVCAAAEALDQDSGIGALVLTGSEKAFA 440
            YEN+LV+++ERVGII LNRPKALNALN+ALI +V AA    D D GIGA+VLTGS++AFA
Sbjct:    4 YENILVERRERVGIITLNRPKALNALNAALIREVGAAVAEFDTDQGIGAIVLTGSDRAFA 63
[Close]
BLAST of mRNA_H-paniculata_contig16410.3664.1 vs. uniprot
Match: A0A562C5C1_9HYPH (Enoyl-CoA hydratase n=1 Tax=Mesorhizobium sp. J18 TaxID=935263 RepID=A0A562C5C1_9HYPH)

HSP 1 Score: 83.6 bits (205), Expect = 1.400e-16
Identity = 42/62 (67.74%), Postives = 51/62 (82.26%), Query Frame = 3 
Query:  255 LKYENVLVQQKERVGIIQLNRPKALNALNSALITDVCAAAEALDQDSGIGALVLTGSEKAFA 440
            + YE +LV+ + RVG+I LNRPKALNALNS ++ +V AAAEA DQD  IGA+VLTGSEKAFA
Sbjct:    1 MAYETILVETRGRVGLITLNRPKALNALNSTVLKEVVAAAEAFDQDPKIGAMVLTGSEKAFA 62
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16410.3664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0006E3F5EA2.870e-1865.71enoyl-CoA hydratase n=1 Tax=Streptomyces hirsutus ... [more]
D8LKM6_ECTSI3.150e-1859.42Enoyl-CoA hydratase n=1 Tax=Ectocarpus siliculosus... [more]
A0A1Y2BSA1_9FUNG6.170e-1860.27ClpP/crotonase n=1 Tax=Rhizoclosmatium globosum Ta... [more]
UPI001E3DCFD01.370e-1770.00enoyl-CoA hydratase n=1 Tax=Subtercola sp. AK-R2A1... [more]
A0A839U037_9HYPH1.880e-1766.13Enoyl-CoA hydratase n=3 Tax=Phyllobacterium TaxID=... [more]
A0A1X1XNJ8_9MYCO2.630e-1767.74Enoyl-CoA hydratase n=3 Tax=Mycobacterium kubicae ... [more]
A0A3E0VWR3_9MICO2.680e-1770.00Enoyl-CoA hydratase n=1 Tax=Subtercola boreus TaxI... [more]
UPI001C3D6CBF5.140e-1766.13enoyl-CoA hydratase n=1 Tax=Pinisolibacter aquiter... [more]
A0A521MQY0_9MICO7.300e-1770.00Enoyl-CoA hydratase n=1 Tax=Herbiconiux sp. TaxID=... [more]
A0A562C5C1_9HYPH1.400e-1667.74Enoyl-CoA hydratase n=1 Tax=Mesorhizobium sp. J18 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16410contigH-paniculata_contig16410:790..2859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.0
Seed ortholog evalue1.4e-15
Seed eggNOG ortholog2880.D8LKM6
KEGG rclassRC00770,RC00831,RC00834,RC01086,RC01095,RC01098,RC01103
KEGG koko:K07511
KEGG ReactionR02685,R03026,R03045,R04137,R04170,R04204,R04224,R04738,R04740,R04744,R04746,R04749,R05595,R06942
KEGG Pathwayko00062,ko00071,ko00280,ko00310,ko00380,ko00410,ko00627,ko00640,ko00650,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00062,map00071,map00280,map00310,map00380,map00410,map00627,map00640,map00650,map00930,map01100,map01110,map01120,map01130,map01200,map01212
KEGG ModuleM00013,M00032,M00085,M00087
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.enoyl-CoA hydratase activity
EggNOG OGsCOG1024@1,KOG1680@2759
Ec32 ortholog descriptionenoyl-CoA hydratase
Ec32 orthologEc-16_003560.1
EC4.2.1.17
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons3
Model size467
Cds size297
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16410.3664.1prot_H-paniculata_contig16410.3664.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16410 790..2422 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929309.6939044-CDS-H-paniculata_contig16410:789..9331622929309.6939044-CDS-H-paniculata_contig16410:789..933Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16410 790..933 -
1691480809.7584236-CDS-H-paniculata_contig16410:789..9331691480809.7584236-CDS-H-paniculata_contig16410:789..933Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16410 790..933 -
1622929309.7044413-CDS-H-paniculata_contig16410:2269..24221622929309.7044413-CDS-H-paniculata_contig16410:2269..2422Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16410 2270..2422 -
1691480809.7685456-CDS-H-paniculata_contig16410:2269..24221691480809.7685456-CDS-H-paniculata_contig16410:2269..2422Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16410 2270..2422 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929309.7164412-UTR-H-paniculata_contig16410:2422..24961622929309.7164412-UTR-H-paniculata_contig16410:2422..2496Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16410 2423..2496 -
1691480809.776341-UTR-H-paniculata_contig16410:2422..24961691480809.776341-UTR-H-paniculata_contig16410:2422..2496Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16410 2423..2496 -
1622929309.725578-UTR-H-paniculata_contig16410:2763..28591622929309.725578-UTR-H-paniculata_contig16410:2763..2859Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16410 2764..2859 -
1691480809.7846668-UTR-H-paniculata_contig16410:2763..28591691480809.7846668-UTR-H-paniculata_contig16410:2763..2859Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16410 2764..2859 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16410.3664.1

>prot_H-paniculata_contig16410.3664.1 ID=prot_H-paniculata_contig16410.3664.1|Name=mRNA_H-paniculata_contig16410.3664.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
MLRTSALFDNARRLGGVLSRRSLTATADLKYENVLVQQKERVGIIQLNRP
KALNALNSALITDVCAAAEALDQDSGIGALVLTGSEKAFAGESRAMHT*
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mRNA from alignment at H-paniculata_contig16410:790..2859-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16410.3664.1 ID=mRNA_H-paniculata_contig16410.3664.1|Name=mRNA_H-paniculata_contig16410.3664.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2070bp|location=Sequence derived from alignment at H-paniculata_contig16410:790..2859- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCCGCATCTCCGCAGCTGCTGAAATGTACGATCAGAGGTGTATTCAACA
GAACAACAACTCTACTAAGTTTACCCTGCTCCTCGCATTCGGCACGGTGA
GCACTTAGTGAACCAACTCGTCTTGAAGAAGATCTAATAGTGTGCCCTCG
ACCCTGCATGCGGTGTCGCTTGGTTTAATAGGTAGCCTAGAGCTAGGTCT
TGCGTACACACTTTACAGACGGTCACTTTGTAATACGATACTGCAGTGAT
GCTGTCTTGCTGTGCTCCGCTGACCCTCGTGGCAGCTGCTGCTGACTAAC
GAAACGCCTCAGTTTGGTTTGACTTCATTGTTTATCCCTCCATAATCACC
TGTCGTGTACCAGGTTATTACAGGTGTTGATTGTTCAGCAGGGGCAGTTG
CCTTATTAAATTTGCCTCGTGTCACAGACAGTCCGCCATGCTTCGTACAA
GTGCCCTTTTCGACAACGCAAGGCGACTCGGTGGCGTTTTATCTCGAAGA
TCGCTAACTGCCACTGCTGATCTCAAGTATGAAAATGTCCTCGTGCAACA
GAAGGAGAGGGTGGGCATCATACAGCTCAATCGCCCTAAGGTAACGTGGG
CGACTCTCATCTTCGTTCTGTTCTCTGTGGTCTGGTGCACCCGTGGTTGC
TCGCCCTTATTGTGACCTGCTGTGCTCTATGTAAAATAATATCCTGTTGT
ACATCCTCGCTGTACACCACATCTGTTTCAGTCAAGCCTTGAACAGCCAG
CTGCATACCTTGTTCATGTCTACGTACCTTTTTTGTTTCACCTGGCTGCA
GTCAGTATGACGTCATGTGTTTGCGATAGTGCTTGAGGCCGGCAAAGCGA
GAAGTCCCGTTCTTCAAGTTCAATCTGAAGTGTGGCATGAATTTGAAGGG
CAAGAGCAACATCAAACGTCAAACCAAAGTCAAACACAAAGTGAACAAGA
TGTTACATAGCTTTGAACTTCGCGGCCCAACCATTTATACTGAATCAATT
GTTTTCATTCGTTGCGTTTATATCGCACCGTAACAGACGCTAAACCCCGC
GATCGAATCTACCTGTCAACACGAGTTGCTATGATGGTTCCGTGATAACA
ACACAAAAAAAGCCGAGACCCCGTAGGTCGGAGTGATTTCACTACATCGT
TGCTGACACTGCACCGAACTGTGCATATAACATGTTCTGTCTGTTATCCT
CGTGCTCGAAACATGCAACGCCCCCAACACAGCCAAGGAATCAACAACGA
ACACTAGCTATGATATACCATTTACAGAACACAACTACGTCAGTAGCATG
CGACTGATCGAGAAAACACTTGAACAAAGACCGGAAACTATTCCGAGAGG
AATGTCATCATCGTTGTTGAATTAATAAAGTTTTTAAGACATTTAAACCT
GCTGCTGTATTTTGGGGTTTAGAGCTCTAACCAATGCCTGGCATTCTCGT
GTTCAAACCAATTTATTTGTTGCTGTGCTTGTGCCGAGCATGTCAAAGGA
AAGCCTGACTGTTATGGGTGGCGCAGAACTTCCTCAACCGCAGTTTGGTT
TTAACAATTCATCATAAACGCAGTACGACATCTTGACCGCATAGTGTTTT
GGCTTCCCCAACTCGTAACCTACTGCAAATGACGTACAGCCTAGAAAAGA
AGTCGCATTCTTCACCGCGCAAACACTCGACATCCGCTAGAATCCACCTC
TTTCGTTTAAACTTATCGCAATTTTGATCCCTGCCCGATTTTAACTCTGG
CAGACTTCGTAGGTGTAGATTCCGCTCTCACCCACGCCTCGCTTGCAGCC
CATGGAGAGCACGAAAATAGGCTGCGCACGTGCGCGACAGAAGCTGCTCG
ATAGTCGCCTCCATTCTGCTCTCTGCCTCACCTTTGTCACCTATTTACTG
CGGCACTCGTTCGTGATTTTGCGTAGGCTCTGAACGCCTTGAACAGCGCA
CTCATAACGGACGTTTGCGCCGCAGCAGAGGCACTCGACCAAGACTCGGG
GATCGGAGCCTTGGTGCTTACGGGAAGCGAGAAGGCATTTGCTGGTGAGT
CTCGCGCAATGCACACGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig16410:790..2859-

>mRNA_H-paniculata_contig16410.3664.1 ID=mRNA_H-paniculata_contig16410.3664.1|Name=mRNA_H-paniculata_contig16410.3664.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig16410:790..2859- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTCGTACAAGTGCCCTTTTCGACAACGCAAGGCGACTCGGTGGCGT
TTTATCTCGAAGATCGCTAACTGCCACTGCTGATCTCAAGTATGAAAATG
TCCTCGTGCAACAGAAGGAGAGGGTGGGCATCATACAGCTCAATCGCCCT
AAGATGCTTCGTACAAGTGCCCTTTTCGACAACGCAAGGCGACTCGGTGG
CGTTTTATCTCGAAGATCGCTAACTGCCACTGCTGATCTCAAGTATGAAA
ATGTCCTCGTGCAACAGAAGGAGAGGGTGGGCATCATACAGCTCAATCGC
CCTAAGGCTCTGAACGCCTTGAACAGCGCACTCATAACGGACGTTTGCGC
CGCAGCAGAGGCACTCGACCAAGACTCGGGGATCGGAGCCTTGGTGCTTA
CGGGAAGCGAGAAGGCATTTGCTGGTGAGTCTCGCGCAATGCACACGTAG
GCTCTGAACGCCTTGAACAGCGCACTCATAACGGACGTTTGCGCCGCAGC
AGAGGCACTCGACCAAGACTCGGGGATCGGAGCCTTGGTGCTTACGGGAA
GCGAGAAGGCATTTGCTGGTGAGTCTCGCGCAATGCACACGTAG
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