mRNA_H-paniculata_contig16404.3661.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16404.3661.1
Unique NamemRNA_H-paniculata_contig16404.3661.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16404.3661.1 vs. uniprot
Match: D8LIK8_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK8_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 8.140e-18
Identity = 36/42 (85.71%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    1 DVDVAFFAVGWFQTLFLYTSRMPSETLMWLWDVWVTERSFKV 126
            DVDV FFAVGWFQTLFLY SRMPS+TL+WLWD WVTERS+KV
Sbjct: 1737 DVDVTFFAVGWFQTLFLYNSRMPSDTLLWLWDNWVTERSYKV 1778
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BLAST of mRNA_H-paniculata_contig16404.3661.1 vs. uniprot
Match: A0A6H5L5V9_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5V9_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 3.870e-17
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    1 DVDVAFFAVGWFQTLFLYTSRMPSETLMWLWDVWVTERSFKV 126
            DV+V FFAVGWFQTLFLY SRMPS+TL+WLWD WVTERS+KV
Sbjct: 2036 DVNVTFFAVGWFQTLFLYNSRMPSDTLLWLWDNWVTERSYKV 2077
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BLAST of mRNA_H-paniculata_contig16404.3661.1 vs. uniprot
Match: B8BPZ6_THAPS (Rab-GAP TBC domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BPZ6_THAPS)

HSP 1 Score: 64.3 bits (155), Expect = 6.650e-11
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 DVDVAFFAVGWFQTLFLYTSRMPSETLMWLWDVWVTERSFKV 126
            D++V  FA+GWFQTLFLY   MPS T+  LWD+W+ ERSFK+
Sbjct: 2413 DLNVGLFALGWFQTLFLYLPSMPSATVCHLWDIWLVERSFKI 2454
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BLAST of mRNA_H-paniculata_contig16404.3661.1 vs. uniprot
Match: A0A7S1FQF6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FQF6_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 6.680e-11
Identity = 25/42 (59.52%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 DVDVAFFAVGWFQTLFLYTSRMPSETLMWLWDVWVTERSFKV 126
            D++V  FA+GWFQTLFLY   MPS T+  +WD+W+ ERSFK+
Sbjct:  342 DLNVGLFALGWFQTLFLYIPSMPSATVCHMWDIWIVERSFKI 383
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BLAST of mRNA_H-paniculata_contig16404.3661.1 vs. uniprot
Match: A0A448ZG68_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZG68_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.240e-10
Identity = 25/42 (59.52%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 DVDVAFFAVGWFQTLFLYTSRMPSETLMWLWDVWVTERSFKV 126
            D++V  FA+GWFQTLFLY   MPS T+  +WD+W+ ERSFK+
Sbjct: 2029 DLNVGLFALGWFQTLFLYLPSMPSATVCHMWDIWLVERSFKI 2070
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BLAST of mRNA_H-paniculata_contig16404.3661.1 vs. uniprot
Match: A0A7S4EKG8_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EKG8_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.240e-10
Identity = 25/42 (59.52%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 DVDVAFFAVGWFQTLFLYTSRMPSETLMWLWDVWVTERSFKV 126
            D++V  FA+GWFQTLFLY   MPS T+  +WD+W+ ERSFK+
Sbjct: 1553 DLNVGLFALGWFQTLFLYLPSMPSATVCHMWDIWLVERSFKI 1594
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BLAST of mRNA_H-paniculata_contig16404.3661.1 vs. uniprot
Match: A0A7S1VJC2_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VJC2_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.240e-10
Identity = 25/42 (59.52%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 DVDVAFFAVGWFQTLFLYTSRMPSETLMWLWDVWVTERSFKV 126
            D++V  FA+GWFQTLFLY   MPS T+  +WD+W+ ERSFK+
Sbjct: 1221 DLNVGLFALGWFQTLFLYLPSMPSATVCHMWDIWLVERSFKI 1262
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BLAST of mRNA_H-paniculata_contig16404.3661.1 vs. uniprot
Match: A0A6U3UDH6_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3UDH6_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.250e-10
Identity = 25/42 (59.52%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 DVDVAFFAVGWFQTLFLYTSRMPSETLMWLWDVWVTERSFKV 126
            D++V  FA+GWFQTLFLY   MPS T+  +WD+W+ ERSFK+
Sbjct: 1095 DLNVGLFALGWFQTLFLYLPSMPSATVCHMWDIWLVERSFKI 1136
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BLAST of mRNA_H-paniculata_contig16404.3661.1 vs. uniprot
Match: A0A1E7FSU1_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FSU1_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.250e-10
Identity = 25/42 (59.52%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 DVDVAFFAVGWFQTLFLYTSRMPSETLMWLWDVWVTERSFKV 126
            D++V  FA+GWFQTLFLY   MPS T+  +WD+W+ ERSFK+
Sbjct:  426 DLNVGLFALGWFQTLFLYLPSMPSATVCHMWDIWLVERSFKI 467
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BLAST of mRNA_H-paniculata_contig16404.3661.1 vs. uniprot
Match: K0TEX3_THAOC (Rab-GAP TBC domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TEX3_THAOC)

HSP 1 Score: 63.2 bits (152), Expect = 1.700e-10
Identity = 25/42 (59.52%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 DVDVAFFAVGWFQTLFLYTSRMPSETLMWLWDVWVTERSFKV 126
            D++V  FA+GWFQTLFLY   MPS T+  +WD+W+ ERSFK+
Sbjct: 1232 DLNVGLFALGWFQTLFLYLPSMPSTTVCHMWDIWLIERSFKI 1273
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16404.3661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIK8_ECTSI8.140e-1885.71Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5L5V9_9PHAE3.870e-1783.33Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
B8BPZ6_THAPS6.650e-1161.90Rab-GAP TBC domain-containing protein n=1 Tax=Thal... [more]
A0A7S1FQF6_9STRA6.680e-1159.52Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A448ZG68_9STRA1.240e-1059.52Rab-GAP TBC domain-containing protein n=1 Tax=Pseu... [more]
A0A7S4EKG8_9STRA1.240e-1059.52Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S1VJC2_9STRA1.240e-1059.52Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A6U3UDH6_9STRA1.250e-1059.52Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A1E7FSU1_9STRA1.250e-1059.52Rab-GAP TBC domain-containing protein n=1 Tax=Frag... [more]
K0TEX3_THAOC1.700e-1059.52Rab-GAP TBC domain-containing protein n=1 Tax=Thal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16404contigH-paniculata_contig16404:5251..5376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Best eggNOG OGNA|NA|NA
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue1.1e-14
Seed eggNOG ortholog2880.D8LIK8
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.regulation of vesicle fusion
EggNOG OGsCOG5210@1,KOG1102@2759
COG Functional cat.K
Best tax levelEukaryota
Exons1
Model size126
Cds size126
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929309.41285-CDS-H-paniculata_contig16404:5250..53761622929309.41285-CDS-H-paniculata_contig16404:5250..5376Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16404 5251..5376 -
1691480809.5997093-CDS-H-paniculata_contig16404:5250..53761691480809.5997093-CDS-H-paniculata_contig16404:5250..5376Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16404 5251..5376 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16404.3661.1prot_H-paniculata_contig16404.3661.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16404 5251..5376 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16404.3661.1

>prot_H-paniculata_contig16404.3661.1 ID=prot_H-paniculata_contig16404.3661.1|Name=mRNA_H-paniculata_contig16404.3661.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=42bp
DVDVAFFAVGWFQTLFLYTSRMPSETLMWLWDVWVTERSFKV
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mRNA from alignment at H-paniculata_contig16404:5251..5376-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16404.3661.1 ID=mRNA_H-paniculata_contig16404.3661.1|Name=mRNA_H-paniculata_contig16404.3661.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=126bp|location=Sequence derived from alignment at H-paniculata_contig16404:5251..5376- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGTGGACGTGGCCTTCTTCGCGGTGGGGTGGTTCCAGACGTTGTTTCT
CTACACTTCCCGTATGCCGTCGGAGACCCTCATGTGGCTGTGGGATGTTT
GGGTCACGGAGCGCTCCTTCAAGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig16404:5251..5376-

>mRNA_H-paniculata_contig16404.3661.1 ID=mRNA_H-paniculata_contig16404.3661.1|Name=mRNA_H-paniculata_contig16404.3661.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=252bp|location=Sequence derived from alignment at H-paniculata_contig16404:5251..5376- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGTGGACGTGGCCTTCTTCGCGGTGGGGTGGTTCCAGACGTTGTTTCT
CTACACTTCCCGTATGCCGTCGGAGACCCTCATGTGGCTGTGGGATGTTT
GGGTCACGGAGCGCTCCTTCAAGGTAGATGTGGACGTGGCCTTCTTCGCG
GTGGGGTGGTTCCAGACGTTGTTTCTCTACACTTCCCGTATGCCGTCGGA
GACCCTCATGTGGCTGTGGGATGTTTGGGTCACGGAGCGCTCCTTCAAGG
TA
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