mRNA_H-paniculata_contig1640.3659.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1640.3659.1
Unique NamemRNA_H-paniculata_contig1640.3659.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1640.3659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1640contigH-paniculata_contig1640:22004..22890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size887
Cds size576
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929309.106625-UTR-H-paniculata_contig1640:22003..223141622929309.106625-UTR-H-paniculata_contig1640:22003..22314Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1640 22004..22314 +
1691480809.433794-UTR-H-paniculata_contig1640:22003..223141691480809.433794-UTR-H-paniculata_contig1640:22003..22314Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1640 22004..22314 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929309.1228478-CDS-H-paniculata_contig1640:22314..228901622929309.1228478-CDS-H-paniculata_contig1640:22314..22890Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1640 22315..22890 +
1691480809.4437418-CDS-H-paniculata_contig1640:22314..228901691480809.4437418-CDS-H-paniculata_contig1640:22314..22890Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1640 22315..22890 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1640.3659.1prot_H-paniculata_contig1640.3659.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1640 22315..22890 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1640.3659.1

>prot_H-paniculata_contig1640.3659.1 ID=prot_H-paniculata_contig1640.3659.1|Name=mRNA_H-paniculata_contig1640.3659.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=192bp
MPLLSTSRVMPVRGRPPAPLRDRVCSIGVLSGFLIVYSVVTLVLIASNGT
GKQPTSKSVIAEGSTHYPPSDSKPLLGGGRGGGGGGDLGKMAQSVGVMPS
LGSGDPTVGHAFVDRGGGGGGGGGDQAETVASYDGSGLDNGGSLRSKKQE
DEEPGGGYQGVMSNGPATARRGEGAGGGGAEDREPFNQEGLG
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mRNA from alignment at H-paniculata_contig1640:22004..22890+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1640.3659.1 ID=mRNA_H-paniculata_contig1640.3659.1|Name=mRNA_H-paniculata_contig1640.3659.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=887bp|location=Sequence derived from alignment at H-paniculata_contig1640:22004..22890+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTAACACTCGCCGGCCAGCTTGCCGTCTACCATTCCAAGCTTCTCACC
TGATACCCCTGAAGATTGGGAGCAGGACACAACGCGAGAAGGAGGATGCA
TTGGTAATGTTCTAGTGCATTGCAGCTGCACGTCGTGCATTTTACCTCGT
CCGTCGTTATGCGAGCAACACAACAACAACAACGACGACTACAGTAGACA
GAACAGACATTATTGGTGTGAGAAGCTGAACAGGGAACCACTGACCAACG
TACATTACAGTACAGAGTATATTATTTCTGCTTCTTACAATACGCATAGT
ACAGAGAGAACATGCCGCTGTTATCAACATCCCGTGTGATGCCGGTGCGC
GGACGACCACCTGCCCCACTGCGGGACAGAGTGTGCAGCATTGGCGTATT
GTCGGGCTTCCTCATCGTTTACTCGGTGGTGACGCTGGTGCTCATCGCCT
CGAACGGAACAGGTAAGCAGCCAACATCTAAAAGCGTGATTGCGGAAGGA
TCGACACATTATCCGCCAAGTGACTCCAAGCCACTATTGGGCGGCGGCCG
CGGCGGCGGCGGTGGCGGTGACCTGGGAAAGATGGCACAAAGCGTCGGAG
TGATGCCTAGTCTTGGTTCCGGTGATCCTACCGTGGGGCATGCGTTCGTA
GACCGAGGAGGAGGAGGAGGAGGGGGAGGAGGAGACCAAGCTGAGACTGT
TGCCAGCTACGATGGTTCTGGCTTGGATAACGGAGGAAGTCTGAGATCAA
AGAAGCAGGAGGACGAGGAGCCAGGAGGCGGCTACCAAGGAGTTATGAGC
AATGGACCTGCAACAGCAAGAAGGGGAGAAGGAGCAGGAGGAGGAGGGGC
AGAAGATAGAGAGCCATTTAATCAGGAGGGTCTGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1640:22004..22890+

>mRNA_H-paniculata_contig1640.3659.1 ID=mRNA_H-paniculata_contig1640.3659.1|Name=mRNA_H-paniculata_contig1640.3659.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1152bp|location=Sequence derived from alignment at H-paniculata_contig1640:22004..22890+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGCTGTTATCAACATCCCGTGTGATGCCGGTGCGCGGACGACCACC
TGCCCCACTGCGGGACAGAGTGTGCAGCATTGGCGTATTGTCGGGCTTCC
TCATCGTTTACTCGGTGGTGACGCTGGTGCTCATCGCCTCGAACGGAACA
GGTAAGCAGCCAACATCTAAAAGCGTGATTGCGGAAGGATCGACACATTA
TCCGCCAAGTGACTCCAAGCCACTATTGGGCGGCGGCCGCGGCGGCGGCG
GTGGCGGTGACCTGGGAAAGATGGCACAAAGCGTCGGAGTGATGCCTAGT
CTTGGTTCCGGTGATCCTACCGTGGGGCATGCGTTCGTAGACCGAGGAGG
AGGAGGAGGAGGGGGAGGAGGAGACCAAGCTGAGACTGTTGCCAGCTACG
ATGGTTCTGGCTTGGATAACGGAGGAAGTCTGAGATCAAAGAAGCAGGAG
GACGAGGAGCCAGGAGGCGGCTACCAAGGAGTTATGAGCAATGGACCTGC
AACAGCAAGAAGGGGAGAAGGAGCAGGAGGAGGAGGGGCAGAAGATAGAG
AGCCATTTAATCAGGAGGGTCTGGGGATGCCGCTGTTATCAACATCCCGT
GTGATGCCGGTGCGCGGACGACCACCTGCCCCACTGCGGGACAGAGTGTG
CAGCATTGGCGTATTGTCGGGCTTCCTCATCGTTTACTCGGTGGTGACGC
TGGTGCTCATCGCCTCGAACGGAACAGGTAAGCAGCCAACATCTAAAAGC
GTGATTGCGGAAGGATCGACACATTATCCGCCAAGTGACTCCAAGCCACT
ATTGGGCGGCGGCCGCGGCGGCGGCGGTGGCGGTGACCTGGGAAAGATGG
CACAAAGCGTCGGAGTGATGCCTAGTCTTGGTTCCGGTGATCCTACCGTG
GGGCATGCGTTCGTAGACCGAGGAGGAGGAGGAGGAGGGGGAGGAGGAGA
CCAAGCTGAGACTGTTGCCAGCTACGATGGTTCTGGCTTGGATAACGGAG
GAAGTCTGAGATCAAAGAAGCAGGAGGACGAGGAGCCAGGAGGCGGCTAC
CAAGGAGTTATGAGCAATGGACCTGCAACAGCAAGAAGGGGAGAAGGAGC
AGGAGGAGGAGGGGCAGAAGATAGAGAGCCATTTAATCAGGAGGGTCTGG
GG
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