mRNA_H-paniculata_contig16399.3655.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16399.3655.1
Unique NamemRNA_H-paniculata_contig16399.3655.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16399.3655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16399contigH-paniculata_contig16399:2537..3040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size235
Cds size234
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929308.3820114-CDS-H-paniculata_contig16399:2536..26471622929308.3820114-CDS-H-paniculata_contig16399:2536..2647Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16399 2537..2647 +
1691480809.0220237-CDS-H-paniculata_contig16399:2536..26471691480809.0220237-CDS-H-paniculata_contig16399:2536..2647Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16399 2537..2647 +
1622929308.3953583-CDS-H-paniculata_contig16399:2917..30401622929308.3953583-CDS-H-paniculata_contig16399:2917..3040Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16399 2918..3040 +
1691480809.0322087-CDS-H-paniculata_contig16399:2917..30401691480809.0322087-CDS-H-paniculata_contig16399:2917..3040Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16399 2918..3040 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16399.3655.1prot_H-paniculata_contig16399.3655.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16399 2537..3040 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16399.3655.1

>prot_H-paniculata_contig16399.3655.1 ID=prot_H-paniculata_contig16399.3655.1|Name=mRNA_H-paniculata_contig16399.3655.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
GQLLSPAHHQKDLSPASPMGSVAVSVRDDDEVVPAAQQQHQGWPSRWHQE
QAAKVLHLPLQGSPSTGLPQRVLSAMW*
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mRNA from alignment at H-paniculata_contig16399:2537..3040+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16399.3655.1 ID=mRNA_H-paniculata_contig16399.3655.1|Name=mRNA_H-paniculata_contig16399.3655.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=504bp|location=Sequence derived from alignment at H-paniculata_contig16399:2537..3040+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCAATTGCTGTCCCCAGCGCATCACCAAAAAGACCTGTCACCGGCGAG
CCCGATGGGTTCGGTGGCCGTGTCTGTGAGGGATGACGATGAGGTTGTTC
CTGCGGCACAGGTGAGGGGTGACAGTAAGGTTGCTCCTGCTGGTAGGCAC
TCAGGGGTTGTAGGAGCGTCTCCTCGCTGATAAAACTCTCTTAGATAACG
ATGAGTTTGCCCAACTGCTTCGCGAGCACTACGAAATGTTTGTAAAGCAC
CAGCCGAAGGGACGTGATGCGGAGAATGCTCTGGTCGTTACGGGGGCAGG
TACAGCCGGGGGGCGGGGTAACATCGGCGGTAAATTTAGTCAATCCGCTG
CTTCAAAATCCGCCGCCACCGATCGTTCTAGCAACAGCACCAAGGGTGGC
CATCCCGCTGGCACCAAGAGCAAGCAGCCAAGGTGCTTCATCTGCCGCTC
CAAGGATCACCTTCAACGGGACTGCCCCAACGTGTACTGTCGGCGATGTG
GTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig16399:2537..3040+

>mRNA_H-paniculata_contig16399.3655.1 ID=mRNA_H-paniculata_contig16399.3655.1|Name=mRNA_H-paniculata_contig16399.3655.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig16399:2537..3040+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCAATTGCTGTCCCCAGCGCATCACCAAAAAGACCTGTCACCGGCGAG
CCCGATGGGTTCGGTGGCCGTGTCTGTGAGGGATGACGATGAGGTTGTTC
CTGCGGCACAGGGGCAATTGCTGTCCCCAGCGCATCACCAAAAAGACCTG
TCACCGGCGAGCCCGATGGGTTCGGTGGCCGTGTCTGTGAGGGATGACGA
TGAGGTTGTTCCTGCGGCACAGCAACAGCACCAAGGGTGGCCATCCCGCT
GGCACCAAGAGCAAGCAGCCAAGGTGCTTCATCTGCCGCTCCAAGGATCA
CCTTCAACGGGACTGCCCCAACGTGTACTGTCGGCGATGTGGTAACAACA
GCACCAAGGGTGGCCATCCCGCTGGCACCAAGAGCAAGCAGCCAAGGTGC
TTCATCTGCCGCTCCAAGGATCACCTTCAACGGGACTGCCCCAACGTGTA
CTGTCGGCGATGTGGTAA
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