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Homology
BLAST of mRNA_H-paniculata_contig16394.3652.1 vs. uniprot
Match: D7FST7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FST7_ECTSI) HSP 1 Score: 105 bits (262), Expect = 1.400e-20 Identity = 63/144 (43.75%), Postives = 90/144 (62.50%), Query Frame = 2
Query: 251 LSNSPRIYRQYSTRKAKWSHKLLQVVETGDVSDVRTFLVDNQKGLHDSLIEPSEMLRHRFRTPLMAAAATGEFSLFRTILHAFNRFFITNHDDGRKVKLR-EQLQIEDVSGMTLLIIAVRSGSIAVVRALLNE-RGIWMPRRLL 676
LS SP RQ S R+A+ S+ +L VE+GD + +R L + K ++++ PS HR RTPLMAAAATG +LF T+LHA NR + ++ LR +QL+ D SGMTLL++A RSGS+ ++ A++ R + P RLL
Sbjct: 8 LSVSPTFGRQTSAREAESSNSILGAVESGDHAKLREGLSGSAKPPANAVLAPSMSFEHRMRTPLMAAAATGSLALFTTVLHAVNRAIGEQRMETNRISLRRKQLEYVDESGMTLLMLAARSGSVGILEAVVERVRIVEAPERLL 151
BLAST of mRNA_H-paniculata_contig16394.3652.1 vs. uniprot
Match: A0A6H5JBB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBB0_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 1.300e-17 Identity = 55/133 (41.35%), Postives = 84/133 (63.16%), Query Frame = 2
Query: 251 LSNSPRIYRQYSTRKAKWSHKLLQVVETGDVSDVRTFLVDNQKGLHDSLIEPSEMLRHRFRTPLMAAAATGEFSLFRTILHAFNRFFITNHDDGRKVKLRE-QLQIEDVSGMTLLIIAVRSGSIAVVRALLNE 646
LS SP RQ S R+++ S+++L VE+ D + +R L + K ++++ PS HR RTPLMAAAATG +LF T+LHA NR + ++ LR+ QL+ D SGMTLL++A RSG++ ++ A++
Sbjct: 51 LSVSPTFGRQTSARESESSNRILGAVESRDHAKLREGLSGSVKPPSNAVLAPSMSFEHRMRTPLMAAAATGSLALFATVLHAVNRAIGEQRMETNRISLRKKQLEYMDESGMTLLMLAARSGNVGILEAVVER 183
BLAST of mRNA_H-paniculata_contig16394.3652.1 vs. uniprot
Match: D7FN08_ECTSI (Kinase, NEK n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN08_ECTSI) HSP 1 Score: 84.3 bits (207), Expect = 1.960e-13 Identity = 50/126 (39.68%), Postives = 73/126 (57.94%), Query Frame = 2
Query: 269 IYRQYSTRKAKWSHKLLQVVETGDVSDVRTFLVDNQKGLHDSLIEPSEMLRHRFRTPLMAAAATGEFSLFRTILHAFNRFFITNHDDGRKVKLREQLQIEDVSGMTLLIIAVRSGSIAVVRALLNE 646
I R++S + A+ S LL +E GD+ D+ L D G L PS + +H+ RTPLMAAAATG+ + L A N+ + ++ R+ ++R QL D GMT L++A RS S+AV+ LL E
Sbjct: 50 IERRFSLKDAEESDNLLTCIEDGDIEDLHRLLSDLPGGETSVLTTPSLLAKHKMRTPLMAAAATGDLATCTATLQALNQQY--SNKLARESEMRTQLTNRDREGMTALMLAARSSSVAVLGELLTE 173
BLAST of mRNA_H-paniculata_contig16394.3652.1 vs. uniprot
Match: A0A6H5KM21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM21_9PHAE) HSP 1 Score: 61.6 bits (148), Expect = 2.880e-6 Identity = 42/106 (39.62%), Postives = 59/106 (55.66%), Query Frame = 2
Query: 338 DVSDVRTFLVDNQKGLHDS-LIEPSEMLRHRFRTPLMAAAATGEFSLFRTILHAFNRFFIT-----NHDDGRKVKLREQLQIEDVSGMTLLIIAVRSGSIAVVRAL 637
D+ VR L ++ L L+ PS RH+ RTPLMAAAATG+ + +L AF F+ N + R +++QL + DV GMTLL+ A + S AV +AL
Sbjct: 44 DLVAVRNILSTMREDLRRPVLLYPSASTRHKLRTPLMAAAATGQMPIVGVVLAAFGDVFMEGEVKENMVNARMKGMQKQLDMVDVEGMTLLMHACSTSSSAVFQAL 149
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 8 |
| Model size | 1747 |
| Cds size | 897 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig16394.3652.1 >prot_H-paniculata_contig16394.3652.1 ID=prot_H-paniculata_contig16394.3652.1|Name=mRNA_H-paniculata_contig16394.3652.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=299bp
MYAASAGNSAVFAKVFRAIELAFSTQEYEVEEQLTATSGDKRNLLMHAAR
SGDHMTLAKVTSSVKRVLLPKKVRHLLKEVDGDRMTFLMHASTAAKEGST
KRSSGESKIRGNMSQSAAAPRRPKAKTSGYSSRSRESKLKTFTTDDRPRR
ASTGSLRASSLPTTVESDILSETGDEEHGRDRGSPRSEEPALSPASNPEL
LVVELIEAATASGSDQMRIGNIDGSVIIFKCAYDFVREMLWKEEVRDQLK
AKDSLGSTILTYAALSKHTKLFNAIFYGMRDGMLDSEVRLSNQRGYEW* back to topmRNA from alignment at H-paniculata_contig16394:359..4999- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig16394.3652.1 ID=mRNA_H-paniculata_contig16394.3652.1|Name=mRNA_H-paniculata_contig16394.3652.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4641bp|location=Sequence derived from alignment at H-paniculata_contig16394:359..4999- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCATCTAATCCAGTTCTTCTCATCCCATCAATGCCTACACTTCACAAG
GTTCGCGAGACTGGGACCTAGGTCAATCGTGTGAATATCGATTGGACCTT
ATATCACCTAAGCATACTGCATCTAATATAGAGCTAGGTCGTTCATCGAT
ATCTCTTAGAAAATACGAGCTCGGAGCACTTTTTCACCCTCGCCTCGCGC
TGTCTGTTAACGTATATGCCGCGAGAACGCAGAAAGCGTTCGACACATTG
TTGAGCAACTCTCCAAGAATCTATCGCCAATACAGCACGCGGAAGGCAAA
GTGGTCACACAAGCTACTGCAAGTGGTCGAGACTGGAGATGTCAGCGATG
TTCGGACTTTCTTGGTTGACAATCAAAAGGGCCTACATGACTCCCTGATT
GAACCCAGTGAGATGCTGAGACACCGCTTTCGGACTCCACTTATGGTACG
TACGCTATGGTCACGTGTTCTATGTACAGACACGTCAGAAAAAATACGTG
GTGTACAAGACTAGTCAATTTTGTTGCGTCCGGGTAGAACTTAGGTTGGT
AGCATTCAGACATTACACCCGTGTGTGATGTGCATGTCATTCAATTATCT
ACCGCTTTCCAAACACCCCCCTCTTTACCGTATCGACTCTCTACCGACAT
TTCGCGAATTACCATCGATGACTGTACCGACGCTGCTTCTAGGCGGCCGC
TGCTACTGGAGAGTTTTCGCTGTTCAGGACCATCTTACATGCTTTCAACA
GGTTCTTCATCACGAACCATGTGAGGAGTTTTTCAGCAGCAGTAAGAATG
TTGAGAAATATTCGTCCGCGGGAAAACGATGTGGTGTCAACTGTCGCAGG
GAACTGTGACAAACAAATCTGTTTCTACTGCGTATAGCTGAGCACACACA
TCGTAGTAGCAGTGAAAATATTACAGAGCCGACGCTAGGTCCGTAGCAAC
ATCGTGAATAGCGCATGTTTCCTTGCTACAGACATTTCTGCGAGCTCCGG
TGAGTCAAGAATTGAAGGAGCATTTTTCGCTGTAGAAAGACCTCAGCAAT
TTGCATTGTTTCCTCACTATTGTCCATCATTCTCTTACTCAGTACTTCCG
GGGCCGCGCATTCATCACAAAATATTTCGGCATCGGACCACAATCCGTAT
CCATATACCAGAAAGTACAATTTCACCCGGCGAAGAAGTCGCATCAATCT
TCCGGATGGATGTGTTGCAAACATTCACTCGTCATGTCAATTCGCTTTCT
TGCTTGCAGGACGACGGCCGGAAGGTCAAACTGAGGGAGCAGTTACAAAT
CGAAGACGTCAGCGGCATGACACTCCTGATAATCGCCGTCAGAAGTGGGA
GTATCGCGGTCGTTCGAGCTTTGTTGAACGAAAGAGGAATCTGGATGCCG
AGGAGGTAGGAAAAGGTATAACACGGCCGACTTGAGCATGTTCCTAGTGA
GGCCGTTTTTTGTTCGATCTTTCCGTTTTCCAAAAATTGGAAATCACGAT
TGCGAGCTGAACAACTCGACAAGAATGACCAAATACACCGGACGTATAAT
AAAGTCAGTATGCTGTAGAGGGTTTTCGCACCTTTCCCTCAATTCTAAGA
TCGCTATCGCGATTTCCAATTTTCGGAAAAAGGGAAAAAGATGGGTTCGT
TTGGAAAGGCCCTTAGACGATGTACATTTGTCATCTGTTATTTTATGTCG
AACCAACAGCTGCACACAGTGGAGCCGTGCATTCTCGCTACACGGCACTC
GACAGGACTTGAAAAGAGGCCAATTTTGCGTGAGGCTCGCGTTTAATTTC
TTGGCAAACACGGAGTAGTGTTTCTTAAAGTCTACTTCTTAACTCTCCAG
GCGTATGGGCTTAAATGCGATGTCCTCGGTACGCCGCTACTTCCCTTCGC
TGTGCGTCAAACAGGTTGTTGCCCGCATTCTGACAGCCAGGGACCACAAC
CGCAAGTCTGTGCTAATGTATGCCGCCAGCGCGGGAAATTCTGCTGTATT
CGCCAAAGTGTTTCGTGCGATAGAGTTGGCCTTCTCCACACAAGAATACG
AGGTGAGACATCATTTATCCTACCACAACCCTTTGCCATACGAATGCCAA
TCTTTCAAATGCACCTGTAGCATTATGTTTCGCCCAAAGCAAAACGCCGG
TATTGATAATCCCTCTGAGATGTCGATGATATATGCACATATCTGGTAGT
TTTCACGCTTGTATGCAGGGCTGAAGACGTGTGCTCCCTGTACGCTCTTT
CCTGGAACACAGGTTGAAGAGCAGCTGACGGCAACTTCCGGCGACAAAAG
AAATCTGCTGATGCATGCGGCAAGATCCGGGGATCACATGACATTGGCTA
AAGTTACGAGTTCAGTCAAGAGGGTGCTCTTACCGAAGAAGGCAAGAAGA
CGTAAATGTCGTATTTCATCATCGGCGCCTAATATACGGTTGTCGGAACT
ATATCCATTCATATATTTTGACACAAGCATGATACCGGAGCATCGTTGCA
GAACAGCACGCACACTGCTGTCAACGCCGGACACACGTAAACGGTCCCCG
CGGTCTTACTCAACTACAGCCATTTGCTTCGTCTATCAAGCAACTCTCCT
CGATGAAGCTTTAAATCTGCGACAGTGTTGGTGAGATACACGAATGAACA
TACCATCTGTCCCATGCGCGTTAGCATCTGCCAGGGCGTAAAACACGAAT
GCACTAAAGCTGATCGATATCTTATAACAGGTGCGGCATCTTCTGAAGGA
GGTTGATGGAGACCGCATGACGTTTCTGATGCATGCCTCCACTGCAGCAA
AAGAGGGGAGCACCAAACGCTCCTCGGGGGAGAGTAAGATCCGTGGTAAC
ATGTCTCAGAGTGCAGCAGCTCCCAGGAGACCCAAGGCTAAAACATCAGG
GTACTCCAGTCGAAGTCGAGAATCTAAGTTGAAGACATTCACAACCGACG
ATAGGCCTCGACGGGCATCTACTGGCTCCCTCCGTGCTTCTTCTCTTCCC
ACCACAGGTGGATTAAATCGCCGTATATCCCCCCCTCCTCCCCCTCTGGG
CTCTACCAGTGTTTTCGTATTGGAAATGGCTCGGATACAAGAACGCTCGA
AATCTGTTTACCAGTTGATCGGAAATTAGAGTTGATGGTTCTTTTGTCTT
ATGATTCACCCTTTGTATTGCTCTCGACGCCAGTAGAACCAACGCTTGAA
GTAACGGTAACCCTAATCCCAACCCTAACCCTAACCCCTCGCCTTCTAGA
CATAGTGTACCTTGACAGAGCTCGAATTTGCGCCGATTTGAGCAAAACAA
GAGTCTACGCACGCGCCAAGACGGCCCAGGACGGTCGCGTTTCAAGTACT
TTGAATGGGTTGATATGCTTAATTTGGATTTCAGCACCACTACACAGCTC
CGTCTTCTCGAGGATGTGCGGTCAAACTAATACATTGATGAATAAAACGA
TTAGAAAAATGGGTCCACGGGCCGATGAATTAACGAATCGGGCGTATCAA
CGAATGCATTATCGCATGGTGAACTCATCAATGGACGAACTAATGGATAA
ATTGGTTCATTGACGAATGCATTTATGGATAATCATGAGTGAATGGATGG
ACAGTAATGAAGGCGAATTAATTACTATATATCTAAACGAAGCTGATCAT
CTAGAGCTCGAAGTCATTACTGAAGTGGGGAAGAATCTGTCTAACCTTCA
CAACGACAACCTGAGGGGTATTCTCAGGCGCCTCTAAATGAATCCAGGGC
TGCACACTCTCATAGTGGGTACCTCCTGTTCTTGTTTCAAGCGTTCGTCT
AAATATGTGTAAGCCGCTGATAGACCATTCATTTCTCACAACCTTTTTCA
GTGTTATGTTGTTGTCTTGGTTCTGATATACGACAGTTGAATCTGATATA
TTGAGCGAAACCGGAGATGAAGAACATGGACGTGATAGGGGTAGTCCAAG
GAGTGAAGAACCCGCACTTTCACCAGCAAGCAATCCTGAGTTGCTTGTAG
TCGAGCTCATTGAGGCTGCAACTGCCAGTGGTAGTGACCAGATGCGTATC
GGGAATATCGACGGCTCTGTGATAATTTTCAAGTGTGCGTACGACTTCGT
CCGGGAGATGTTGTGGAAGGAAGAGGTATGTGTGTGTGCGTGTGTATCAT
GGCGCATTGATGCACTCCTCCATCCTCGCGGACTAGCATGCTACCGCGGG
AGCGAGGGTGAGACAACGGAGATTTGTGTATTTCACACATCCTGTGATAT
TGTGCATTTTCCGTTTAACCTTACACACCAGACAACAGTGCAGTATACGT
GATTTATGTGCACCATGTCCTGACCTTTGGCTGATTGTATCCACAGGTGC
GAGACCAGCTCAAGGCGAAGGATTCTTTGGGGAGCACCATACTGACGTAC
GCTGCCCTGTCCAAACACACAAAACTCTTCAATGCCATCTTCTATGGTAT
GCGGGATGGAATGCTCGACTCCGAGGTGCGTTTGTCCAACCAAAGAGGCT
ACGAGTGGTAACTGAGTACAAGGAGGGGTGTGTGGTCCATAAAGCACATG
CGCATCACCACACAGGTAATTGATTAAAATTATTATCTGCTCGCGATCTT
GTCCCCGCGTGGACCGCGTCCTCTAGTATTCGAACAATCTG back to topCoding sequence (CDS) from alignment at H-paniculata_contig16394:359..4999- >mRNA_H-paniculata_contig16394.3652.1 ID=mRNA_H-paniculata_contig16394.3652.1|Name=mRNA_H-paniculata_contig16394.3652.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1794bp|location=Sequence derived from alignment at H-paniculata_contig16394:359..4999- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATGCCGCCAGCGCGGGAAATTCTGCTGTATTCGCCAAAGTGTTTCG
TGCGATAGAGTTGGCCTTCTCCACACAAGAATACGAGATGTATGCCGCCA
GCGCGGGAAATTCTGCTGTATTCGCCAAAGTGTTTCGTGCGATAGAGTTG
GCCTTCTCCACACAAGAATACGAGGTTGAAGAGCAGCTGACGGCAACTTC
CGGCGACAAAAGAAATCTGCTGATGCATGCGGCAAGATCCGGGGATCACA
TGACATTGGCTAAAGTTACGAGTTCAGTCAAGAGGGTGCTCTTACCGAAG
AAGGTTGAAGAGCAGCTGACGGCAACTTCCGGCGACAAAAGAAATCTGCT
GATGCATGCGGCAAGATCCGGGGATCACATGACATTGGCTAAAGTTACGA
GTTCAGTCAAGAGGGTGCTCTTACCGAAGAAGGTGCGGCATCTTCTGAAG
GAGGTTGATGGAGACCGCATGACGTTTCTGATGCATGCCTCCACTGCAGC
AAAAGAGGGGAGCACCAAACGCTCCTCGGGGGAGAGTAAGATCCGTGGTA
ACATGTCTCAGAGTGCAGCAGCTCCCAGGAGACCCAAGGCTAAAACATCA
GGGTACTCCAGTCGAAGTCGAGAATCTAAGTTGAAGACATTCACAACCGA
CGATAGGCCTCGACGGGCATCTACTGGCTCCCTCCGTGCTTCTTCTCTTC
CCACCACAGGTGCGGCATCTTCTGAAGGAGGTTGATGGAGACCGCATGAC
GTTTCTGATGCATGCCTCCACTGCAGCAAAAGAGGGGAGCACCAAACGCT
CCTCGGGGGAGAGTAAGATCCGTGGTAACATGTCTCAGAGTGCAGCAGCT
CCCAGGAGACCCAAGGCTAAAACATCAGGGTACTCCAGTCGAAGTCGAGA
ATCTAAGTTGAAGACATTCACAACCGACGATAGGCCTCGACGGGCATCTA
CTGGCTCCCTCCGTGCTTCTTCTCTTCCCACCACAGTTGAATCTGATATA
TTGAGCGAAACCGGAGATGAAGAACATGGACGTGATAGGGGTAGTCCAAG
GAGTGAAGAACCCGCACTTTCACCAGCAAGCAATCCTGAGTTGCTTGTAG
TCGAGCTCATTGAGGCTGCAACTGCCAGTGGTAGTGACCAGATGCGTATC
GGGAATATCGACGGCTCTGTGATAATTTTCAAGTGTGCGTACGACTTCGT
CCGGGAGATGTTGTGGAAGGAAGAGTTGAATCTGATATATTGAGCGAAAC
CGGAGATGAAGAACATGGACGTGATAGGGGTAGTCCAAGGAGTGAAGAAC
CCGCACTTTCACCAGCAAGCAATCCTGAGTTGCTTGTAGTCGAGCTCATT
GAGGCTGCAACTGCCAGTGGTAGTGACCAGATGCGTATCGGGAATATCGA
CGGCTCTGTGATAATTTTCAAGTGTGCGTACGACTTCGTCCGGGAGATGT
TGTGGAAGGAAGAGGTGCGAGACCAGCTCAAGGCGAAGGATTCTTTGGGG
AGCACCATACTGACGTACGCTGCCCTGTCCAAACACACAAAACTCTTCAA
TGCCATCTTCTATGGTATGCGGGATGGAATGCTCGACTCCGAGGTGCGTT
TGTCCAACCAAAGAGGCTACGAGTGGTAAGTGCGAGACCAGCTCAAGGCG
AAGGATTCTTTGGGGAGCACCATACTGACGTACGCTGCCCTGTCCAAACA
CACAAAACTCTTCAATGCCATCTTCTATGGTATGCGGGATGGAATGCTCG
ACTCCGAGGTGCGTTTGTCCAACCAAAGAGGCTACGAGTGGTAA back to top
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