mRNA_H-paniculata_contig10552.364.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10552.364.1
Unique NamemRNA_H-paniculata_contig10552.364.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10552.364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10552contigH-paniculata_contig10552:779..1241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size463
Cds size366
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928758.701737-CDS-H-paniculata_contig10552:778..11441622928758.701737-CDS-H-paniculata_contig10552:778..1144Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10552 779..1144 +
1691480608.4343214-CDS-H-paniculata_contig10552:778..11441691480608.4343214-CDS-H-paniculata_contig10552:778..1144Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10552 779..1144 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928758.7219653-UTR-H-paniculata_contig10552:1144..12411622928758.7219653-UTR-H-paniculata_contig10552:1144..1241Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10552 1145..1241 +
1691480608.4453032-UTR-H-paniculata_contig10552:1144..12411691480608.4453032-UTR-H-paniculata_contig10552:1144..1241Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10552 1145..1241 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10552.364.1prot_H-paniculata_contig10552.364.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10552 779..1144 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10552.364.1

>prot_H-paniculata_contig10552.364.1 ID=prot_H-paniculata_contig10552.364.1|Name=mRNA_H-paniculata_contig10552.364.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
MSPATVERGGGCFEPLEHFGKRFEKTSIETRSNLFNGARSGISRVAHCTT
RNDHTFQGRETLCRAAPQGCSKRQKGSSATAPPTVARLIPSDIRQHAFSS
TKRRHLLTAIISQVWLKTKRY*
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mRNA from alignment at H-paniculata_contig10552:779..1241+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10552.364.1 ID=mRNA_H-paniculata_contig10552.364.1|Name=mRNA_H-paniculata_contig10552.364.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=463bp|location=Sequence derived from alignment at H-paniculata_contig10552:779..1241+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTCCGGCTACGGTGGAACGGGGGGGGGGGTGTTTCGAGCCACTTGA
ACATTTCGGAAAGCGGTTCGAAAAAACCTCAATCGAAACAAGATCAAACC
TTTTCAATGGCGCGCGTTCGGGCATCTCTAGAGTCGCACACTGCACGACA
CGGAACGACCACACTTTCCAAGGGCGAGAGACATTGTGCCGAGCCGCTCC
TCAAGGTTGTTCAAAACGCCAAAAAGGCAGCTCAGCGACCGCCCCCCCTA
CCGTAGCCCGACTCATACCCTCCGACATCAGGCAACACGCTTTTAGCTCA
ACCAAGAGGCGCCACCTACTAACAGCGATTATCAGTCAAGTTTGGTTGAA
AACAAAGAGGTACTGAAACATACAATGGCTACCATGGCTGTTTTATGCCG
TTGGTGGCCCTTTGCTCCGAAAAAATGCTGATTTGCACATTGTAAACTCA
TGGTAACGTTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig10552:779..1241+

>mRNA_H-paniculata_contig10552.364.1 ID=mRNA_H-paniculata_contig10552.364.1|Name=mRNA_H-paniculata_contig10552.364.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig10552:779..1241+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTCCGGCTACGGTGGAACGGGGGGGGGGGTGTTTCGAGCCACTTGA
ACATTTCGGAAAGCGGTTCGAAAAAACCTCAATCGAAACAAGATCAAACC
TTTTCAATGGCGCGCGTTCGGGCATCTCTAGAGTCGCACACTGCACGACA
CGGAACGACCACACTTTCCAAGGGCGAGAGACATTGTGCCGAGCCGCTCC
TCAAGGTTGTTCAAAACGCCAAAAAGGCAGCTCAGCGACCGCCCCCCCTA
CCGTAGCCCGACTCATACCCTCCGACATCAGGCAACACGCTTTTAGCTCA
ACCAAGAGGCGCCACCTACTAACAGCGATTATCAGTCAAGTTTGGTTGAA
AACAAAGAGGTACTGAATGAGTCCGGCTACGGTGGAACGGGGGGGGGGGT
GTTTCGAGCCACTTGAACATTTCGGAAAGCGGTTCGAAAAAACCTCAATC
GAAACAAGATCAAACCTTTTCAATGGCGCGCGTTCGGGCATCTCTAGAGT
CGCACACTGCACGACACGGAACGACCACACTTTCCAAGGGCGAGAGACAT
TGTGCCGAGCCGCTCCTCAAGGTTGTTCAAAACGCCAAAAAGGCAGCTCA
GCGACCGCCCCCCCTACCGTAGCCCGACTCATACCCTCCGACATCAGGCA
ACACGCTTTTAGCTCAACCAAGAGGCGCCACCTACTAACAGCGATTATCA
GTCAAGTTTGGTTGAAAACAAAGAGGTACTGA
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