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Homology
BLAST of mRNA_H-paniculata_contig10552.365.1 vs. uniprot
Match: A0A6H5K0I5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0I5_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 1.240e-15 Identity = 50/67 (74.63%), Postives = 55/67 (82.09%), Query Frame = 2
Query: 377 GAGSPTTGLTVREERYKRELEGLRTRVRELEGMMECRLEERERAYRRKLRAAVAECRSLKVREHGAV 577
GA GLT E+RYKRELE LR RV ELEGM+ RLEERERAYRRKLRAAVAECRSL+VR+HGA+
Sbjct: 2096 GADDADPGLTDTEKRYKRELEALRGRVWELEGMVAGRLEERERAYRRKLRAAVAECRSLRVRKHGAL 2162
BLAST of mRNA_H-paniculata_contig10552.365.1 vs. uniprot
Match: D8LJM5_ECTSI (Kinesin family member 3A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJM5_ECTSI) HSP 1 Score: 82.0 bits (201), Expect = 6.380e-14 Identity = 48/65 (73.85%), Postives = 52/65 (80.00%), Query Frame = 2
Query: 377 GAGSPTTGLTVREERYKRELEGLRTRVRELEGMMECRLEERERAYRRKLRAAVAECRSLKVREHG 571
GA GLT E+RYKRELE LR RV ELEGM+ RLEERERAYRRKLRAAVAECRS +VR+HG
Sbjct: 2720 GADDADPGLTDTEKRYKRELEALRGRVWELEGMVGGRLEERERAYRRKLRAAVAECRSSRVRKHG 2784
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 84.3 |
| Seed ortholog evalue | 7.8e-14 |
| Seed eggNOG ortholog | 2880.D8LJM5 |
| KEGG ko | ko:K10395 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | microtubule motor activity |
| EggNOG OGs | COG5059@1,KOG0244@2759 |
| COG Functional cat. | Z |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko04812 |
| Exons | 3 |
| Model size | 790 |
| Cds size | 681 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10552.365.1 >prot_H-paniculata_contig10552.365.1 ID=prot_H-paniculata_contig10552.365.1|Name=mRNA_H-paniculata_contig10552.365.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=227bp
MIAAEAAARDAALREAREESDRLEEEGGMSPEFSSERSGYSWSVPTTATG
SPAGSGAGGGGATTAARLMMHAPSWTVGQDSSPSSTGRQKESPRRSSQNS
GDAGRAGGVGLSVAGAGAGSPTTGLTVREERYKRELEGLRTRVRELEGMM
ECRLEERERAYRRKLRAAVAECRSLKVREHGAVRSTSSRSGSVDKISHHE
TGKLSTSDLTRSRRDSAPGARTQRVL* back to topmRNA from alignment at H-paniculata_contig10552:3639..6931- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig10552.365.1 ID=mRNA_H-paniculata_contig10552.365.1|Name=mRNA_H-paniculata_contig10552.365.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3293bp|location=Sequence derived from alignment at H-paniculata_contig10552:3639..6931- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TAAGGGAGCTGCGCTGACCGCGGCCGCTATGATAGCAGCTGAGGCGGCTG
CTCGAGATGCGGCCCTGAGGGAAGCTCGGGAGGAGAGCGATCGTTTGGAA
GAAGAAGGCGGGATGTCTCCCGAATTTTCTTCGGAACGTTCTGGGTATTC
TTGGTCGGTACCAACAACGGCTACCGGTAGTCCTGCTGGTAGCGGCGCTG
GTGGTGGTGGTGCTACTACGGCGGTACGAAAAGAACGTGGAAGAAATTTC
TTTGTAGCCCTTTTGAATTGTACAGGGTAAAAACAAAAATGTTGGATTTG
CAAGTGTACTGCAGAGAATATTTATTTATTTATTTTTTCCGTGTGTGTCA
ATAAGTCAAATTTTACTAAAAGTATTCAACCATGTATGTGATGACACGAA
ACCGATGGATGAATCATGACAGCACTCGCCTGGTGATCAAAGAAGGGTCA
CTCACCAGTATTTTTCCTGTCAAGTGTGAAGTGTTGGCACTCCGACATCA
TGTAGCATTGTGACGTGATTCTGGAAGATTTTTGTTGGAGGGTTTTCAAC
TCCAGTGGTGTTCAGTTACTTTACTTTTCCGTTGATAAACAAATGGTCCT
TACAGTCATCGGATCCCCAACCCCCTAATGGTTTTGGTACAAGAAAGTTA
CCAAGTTAGTTGCAACTGCAACGACCGGAGCTTGATTATCCTGTTCGATG
GAGCCCGGCCCTTTTTGTTCATGGCGTGTTTCCTTTAAAAAAGTCAATCT
CCACGTGCTGCACTACTCCCACTTCTGTACTGGATAAGTCGTCGGTCACG
CCTAGGCTCCCGGGCAGCCGCGTATTGTCTTCCTCTAACTTCAGTGTCCA
AAAACCGCTGTTGTACCTTTGACACCACTGGAGCAGTGTAAACAGTGCGC
AGATAAGGAAGGCATGTGATAGTACTCGACCCCAGCAGTACGAGGGTGAT
TATTTCGAAGGGTAATACTCTGGAGTATGACCATGAAAGAAACAATCCGT
ATACATCATCGTGTACAAAAGAAACACAGCTTATTATTTTTTCACACAAA
CAAAAGAGAAATGGGCGCAGGGGGGGGGGGGACTTGATAAACGAAGAATC
TAACCTGACCCATTATGTACACACAAGAAGGGTAAGTAACCCTCAATCTA
GTACCGGCAGTACTACCCCCTATATTCCATGAATCCACATACGCACAACT
GGGTTTGAAGACGCCAAGTTATCAGTTCAACTAATTCTCTTGAAAACAGG
CAAGGTTGATGATGCACGCACCTTCTTGGACTGTCGGCCAAGATTCGTCG
CCGTCATCTACCGGGCGACAAAAGGAATCACCCCGACGGAGCTCCCAAAA
CAGCGGTGATGCCGGTAGGGCTGGTGGGGTAGGCTTGTCTGTGGCGGGAG
CCGGGGCAGGCAGTCCCACCACCGGTTTAACCGTAAGGGAAGAGCGGTAT
AAGCGGGAGCTCGAGGGGCTTCGTACGCGCGTGCGAGAGTTGGAAGGGAT
GATGGAGTGCAGGCTCGAGGAGCGAGAGCGAGCATATCGACGGAAGCTGC
GCGCCGCCGTGGCGGAGTGTCGCTCGCTAAAGGTATGTTGTGTCGGGGAA
GGGGGTGGTGTTGGGTGGGACTTGGGGACCGTTTAACTAGGGGGGATCAT
TTAACTAGGGGGTCGTTCACAAGTTAAAGCCCGTTTGATACTTGTCAGGG
TAAAAAGGCGGTGGTGTCATAACTGCGTTATACCTACATGTACTATCGAG
GATATGCAGCCCACCTCATATATAAGCTGTGTACTAGTATCATTATCATT
CGTTATCATTGTGAGTGAAATGAAATAAATAGAATGTTAGAACCGTTAAC
CACGCGCTGGCGAGAGGATGGAGCACGGGGGGGCGCGCGCGGGCGCGGGG
GGGGGGGGTTCTTATGCTTCACTCCGATAATTGATCGGGAAGCGCGGTCC
AGAGCCAGGAGAGTATTACCTCGGTACTTGTCGTCGTGTACACTCACACG
TCGGGGAGAGGCAGCAGTCCCAGTCGCTCGTCAACATTGGAATTGACGGC
GGTATATGCGTTGGAAGAGATTGTTGTTCTCTCTGCTTTCCGTAGGCGAT
TCTGTCACTTACCGGGGTTTTTTTGCCGGATATAGTGATGATTTGAGAAG
AAAGGGTCGGGAGTTACCCATAGAATATTCTTTTGGAAGATGACAGTTTT
CTGCAGTAGTTTACAAAGTTGTGAATCATCGTCCACGTAGTTTTGACTAC
AATACCCAAGCAATACATGTTCACAATAGCGTGCTCGGGTCTATTTTCAC
CACAGTATATACATACATCCTCTGTCTCATGAAATATACTCAATTACGAT
TATCGAGGCGTACTTAAACATCCTTTTTTTTTTCTTTTTGAAGAATTTTA
CATGTTTTTTTGGGGTTGAAACCCAAATTCTTGGGTCAAAACAGTTGACT
TTTTAAAAACGAAAACATCCGCAGTGACAAAACATATTTGGCTGAGAAAC
ATCCTTCTTGGGGGACCATTTTTCCCCATAGAACTCGGGGGGGGAAAAAA
AGTACACTTTTTGGCGTTTTTCGGCCGAGTTCATTTTTATAACGGCGTAT
GTTTTTAGTGTTAAACGTCAAGTTTTTGACTCAAAAAAAAACAAAAAATA
TAAATAGTTTCAAATGTGTCTCTATCATATCACAACACATTGTACTTGTG
AGATAATACAAAAAAATGGCCTTTTTTCTTCGGGTACCTGTTTTTCACGG
CTCGTGTTCTGGTGTTGAAAATTGACTGTTTGAACCAAACATTTAGTTTT
CCATCCATGAACCTTTTTTTTTATTTTTGCATCCCTTCTTTTACGAAAGT
TAGATTTGAGATGTTTTATATATATATATATATATATATATATTGCAGAT
GCAAGCGCTTGTCACTCTGTTACGCAACTGTCGGGGGGGATATGTGGGAA
AGAGGGGGGCTGTAGTGGCGAGCGATGTATCAAAATTTTTCAAGATTTAA
AAAAAATGAAGTGTTTTTTTCCCTGTTTTTCGTGTGTTTTTTTGCATGCG
TGCCGACAGGTTCGAGAGCACGGTGCGGTCAGGTCAACAAGTAGCAGAAG
CGGCAGTGTAGATAAAATATCGCACCACGAGACCGGGAAATTATCAACGA
GTGATCTCACACGCTCCCGGAGAGATAGTGCGCCGGGGGCCAGGACACAG
CGTGTGTTGTAGGCTCTTGGTTTTGTGCATAGTGGTAAAGATATAATTAT
AAATACTCACTCATATATATACACACGACATTTGTTAAGATCT back to topCoding sequence (CDS) from alignment at H-paniculata_contig10552:3639..6931- >mRNA_H-paniculata_contig10552.365.1 ID=mRNA_H-paniculata_contig10552.365.1|Name=mRNA_H-paniculata_contig10552.365.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1362bp|location=Sequence derived from alignment at H-paniculata_contig10552:3639..6931- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATAGCAGCTGAGGCGGCTGCTCGAGATGCGGCCCTGAGGGAAGCTCG
GGAGGAGAGCGATCGTTTGGAAGAAGAAGGCGGGATGTCTCCCGAATTTT
CTTCGGAACGTTCTGGGTATTCTTGGTCGGTACCAACAACGGCTACCGGT
AGTCCTGCTGGTAGCGGCGCTGGTGGTGGTGGTGCTACTACGGCGATGAT
AGCAGCTGAGGCGGCTGCTCGAGATGCGGCCCTGAGGGAAGCTCGGGAGG
AGAGCGATCGTTTGGAAGAAGAAGGCGGGATGTCTCCCGAATTTTCTTCG
GAACGTTCTGGGTATTCTTGGTCGGTACCAACAACGGCTACCGGTAGTCC
TGCTGGTAGCGGCGCTGGTGGTGGTGGTGCTACTACGGCGGCAAGGTTGA
TGATGCACGCACCTTCTTGGACTGTCGGCCAAGATTCGTCGCCGTCATCT
ACCGGGCGACAAAAGGAATCACCCCGACGGAGCTCCCAAAACAGCGGTGA
TGCCGGTAGGGCTGGTGGGGTAGGCTTGTCTGTGGCGGGAGCCGGGGCAG
GCAGTCCCACCACCGGTTTAACCGTAAGGGAAGAGCGGTATAAGCGGGAG
CTCGAGGGGCTTCGTACGCGCGTGCGAGAGTTGGAAGGGATGATGGAGTG
CAGGCTCGAGGAGCGAGAGCGAGCATATCGACGGAAGCTGCGCGCCGCCG
TGGCGGAGTGTCGCTCGCTAAAGGCAAGGTTGATGATGCACGCACCTTCT
TGGACTGTCGGCCAAGATTCGTCGCCGTCATCTACCGGGCGACAAAAGGA
ATCACCCCGACGGAGCTCCCAAAACAGCGGTGATGCCGGTAGGGCTGGTG
GGGTAGGCTTGTCTGTGGCGGGAGCCGGGGCAGGCAGTCCCACCACCGGT
TTAACCGTAAGGGAAGAGCGGTATAAGCGGGAGCTCGAGGGGCTTCGTAC
GCGCGTGCGAGAGTTGGAAGGGATGATGGAGTGCAGGCTCGAGGAGCGAG
AGCGAGCATATCGACGGAAGCTGCGCGCCGCCGTGGCGGAGTGTCGCTCG
CTAAAGGTTCGAGAGCACGGTGCGGTCAGGTCAACAAGTAGCAGAAGCGG
CAGTGTAGATAAAATATCGCACCACGAGACCGGGAAATTATCAACGAGTG
ATCTCACACGCTCCCGGAGAGATAGTGCGCCGGGGGCCAGGACACAGCGT
GTGTTGTAGGTTCGAGAGCACGGTGCGGTCAGGTCAACAAGTAGCAGAAG
CGGCAGTGTAGATAAAATATCGCACCACGAGACCGGGAAATTATCAACGA
GTGATCTCACACGCTCCCGGAGAGATAGTGCGCCGGGGGCCAGGACACAG
CGTGTGTTGTAG back to top
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