mRNA_H-paniculata_contig16344.3631.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16344.3631.1
Unique NamemRNA_H-paniculata_contig16344.3631.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16344.3631.1 vs. uniprot
Match: A0A6H5JTR5_9PHAE (SANT_DAMP1_like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTR5_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.420e-25
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:   22 AMWSKLETDHLIGLALKYDLRWPVIKDRYKCTPDRPVQDLQHRFYDVANRLQV 180
            A W+KLETDHL+ +ALKYDLRWP IKDRYKCTPDRP Q+LQ RFYDVANRLQV
Sbjct:  175 ASWTKLETDHLVAMALKYDLRWPAIKDRYKCTPDRPAQELQQRFYDVANRLQV 227
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BLAST of mRNA_H-paniculata_contig16344.3631.1 vs. uniprot
Match: D7FXC8_ECTSI (SANT_DAMP1_like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXC8_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 2.810e-25
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:   22 AMWSKLETDHLIGLALKYDLRWPVIKDRYKCTPDRPVQDLQHRFYDVANRLQV 180
            A W+KLETDHL+ +ALKYDLRWPVIKDRYKCTPDRPVQ+LQ RFYDVANRLQ 
Sbjct:  156 ASWTKLETDHLVAMALKYDLRWPVIKDRYKCTPDRPVQELQQRFYDVANRLQA 208
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BLAST of mRNA_H-paniculata_contig16344.3631.1 vs. uniprot
Match: A0A7S1UIQ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UIQ6_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 6.830e-13
Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:   16 KNAMWSKLETDHLIGLALKYDLRWPVIKDRYKCTPDRPVQDLQHRFYDVANRL 174
            KN+ W++ ETD+L+ L  + DLRWPVI DRY  TP RPV++LQ R+YDV   L
Sbjct:   87 KNSTWTRSETDYLMILCQRMDLRWPVIADRYALTPRRPVEELQKRYYDVVRAL 139
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BLAST of mRNA_H-paniculata_contig16344.3631.1 vs. uniprot
Match: A0A7R9Y843_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y843_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 7.220e-12
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:   28 WSKLETDHLIGLALKYDLRWPVIKDRYKCTPDRPVQDLQHRFYDVANRL 174
            W++ ETD+L+ L  +YDLRWPVI DRY  TP R V+D+Q R+YDV   L
Sbjct:  138 WTRSETDYLMILCQRYDLRWPVIADRYTLTPLRAVEDMQKRYYDVVRAL 186
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BLAST of mRNA_H-paniculata_contig16344.3631.1 vs. uniprot
Match: A0A1Z5KK74_FISSO (DNA methyltransferase 1-associated protein 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KK74_FISSO)

HSP 1 Score: 63.9 bits (154), Expect = 2.010e-10
Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:    1 WLLSEKNAMWSKLETDHLIGLALKYDLRWPVIKDRYKCT-PDRPVQDLQHRFYDVANRL 174
            WL SE    WS+ ETD L+  A  ++LRWPVI DR+    P RPV+DLQHRFY VA +L
Sbjct:  113 WLTSED---WSQSETDTLMEYARIFELRWPVIHDRWCAVCPPRPVEDLQHRFYTVAAKL 168
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BLAST of mRNA_H-paniculata_contig16344.3631.1 vs. uniprot
Match: A0A7S2S7D5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S7D5_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.730e-10
Identity = 24/49 (48.98%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:   28 WSKLETDHLIGLALKYDLRWPVIKDRYKCTPDRPVQDLQHRFYDVANRL 174
            W++ +TD L+ L  +YDLRWPVI DRY   P R ++ LQHR+Y +A ++
Sbjct:  152 WTRSDTDKLVALCARYDLRWPVIADRYNQIPRRSMEQLQHRYYTMAQKV 200
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BLAST of mRNA_H-paniculata_contig16344.3631.1 vs. uniprot
Match: A0A8J2WZ64_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WZ64_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.430e-9
Identity = 27/57 (47.37%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:    4 LLSEKNAMWSKLETDHLIGLALKYDLRWPVIKDRYKCTPDRPVQDLQHRFYDVANRL 174
            LL++++  W++ +TD+LI L  + DLRWPVI DRY   P RP++ LQ R+Y  A+ L
Sbjct:  137 LLADRH--WTRSDTDYLINLCHRLDLRWPVILDRYAPVPPRPLEQLQRRYYHCAHAL 191
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BLAST of mRNA_H-paniculata_contig16344.3631.1 vs. uniprot
Match: A0A061RDD3_9CHLO (DNA methyltransferase 1-associated protein 1 (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RDD3_9CHLO)

HSP 1 Score: 60.5 bits (145), Expect = 3.240e-9
Identity = 27/61 (44.26%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:    4 LLSEKNAMWSKLETDHLIGLALKYDLRWPVIKDRYKCT--PDRPVQDLQHRFYDVANRLQV 180
            LL+  +A WS+ ETD+L+GL  ++DLRWPVI DR+     P R +++L+ R+Y +A  L +
Sbjct:  137 LLAASDAKWSRAETDYLMGLCEQFDLRWPVIADRFHFDGGPPRTMEELKSRYYSLARLLLI 197
[Close]
BLAST of mRNA_H-paniculata_contig16344.3631.1 vs. uniprot
Match: A0A4V4LT24_9BASI (SWR1-complex protein 4 n=1 Tax=Wallemia hederae TaxID=1540922 RepID=A0A4V4LT24_9BASI)

HSP 1 Score: 60.5 bits (145), Expect = 3.330e-9
Identity = 24/53 (45.28%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:   16 KNAMWSKLETDHLIGLALKYDLRWPVIKDRYKCTPDRPVQDLQHRFYDVANRL 174
            ++A WSK ETD+L+ L  ++D+RWPVI DRY+    R ++DL+ R++D+  +L
Sbjct:  115 QDAAWSKDETDYLVNLIHEFDVRWPVIWDRYEWRSGRTLEDLKARYFDICRKL 167
[Close]
BLAST of mRNA_H-paniculata_contig16344.3631.1 vs. uniprot
Match: A0A061QNN8_9CHLO (DNA methyltransferase 1-associated protein 1 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QNN8_9CHLO)

HSP 1 Score: 60.1 bits (144), Expect = 3.720e-9
Identity = 27/61 (44.26%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:    4 LLSEKNAMWSKLETDHLIGLALKYDLRWPVIKDRYKCT--PDRPVQDLQHRFYDVANRLQV 180
            LL+  +A WS+ ETD+L+GL  ++DLRWPVI DR+     P R +++L+ R+Y +A  L +
Sbjct:  137 LLAVSDAKWSRAETDYLMGLCEQFDLRWPVIADRFHFDGGPPRTMEELKSRYYSLARLLLI 197
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16344.3631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTR5_9PHAE1.420e-2583.02SANT_DAMP1_like domain-containing protein n=1 Tax=... [more]
D7FXC8_ECTSI2.810e-2584.91SANT_DAMP1_like domain-containing protein n=1 Tax=... [more]
A0A7S1UIQ6_9STRA6.830e-1356.60Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7R9Y843_9STRA7.220e-1257.14Hypothetical protein (Fragment) n=2 Tax=Pinguiococ... [more]
A0A1Z5KK74_FISSO2.010e-1055.93DNA methyltransferase 1-associated protein 1 n=2 T... [more]
A0A7S2S7D5_9STRA3.730e-1048.98Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J2WZ64_9STRA2.430e-947.37Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A061RDD3_9CHLO3.240e-944.26DNA methyltransferase 1-associated protein 1 (Frag... [more]
A0A4V4LT24_9BASI3.330e-945.28SWR1-complex protein 4 n=1 Tax=Wallemia hederae Ta... [more]
A0A061QNN8_9CHLO3.720e-944.26DNA methyltransferase 1-associated protein 1 n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16344contigH-paniculata_contig16344:5423..5602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.1
Seed ortholog evalue9.8e-21
Seed eggNOG ortholog2880.D7FXC8
Preferred nameSWC4
KEGG koko:K11324,ko:K13865,ko:K21412
KEGG TC2.A.3.3.5
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000122,GO:0000123,GO:0000228,GO:0000785,GO:0000790,GO:0000812,GO:0000981,GO:0001085,GO:0001103,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0003712,GO:0003714,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006304,GO:0006305,GO:0006306,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008134,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016569,GO:0016570,GO:0016573,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0031248,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032259,GO:0032386,GO:0032388,GO:0032879,GO:0032880,GO:0032991,GO:0033157,GO:0033554,GO:0034641,GO:0034728,GO:0035267,GO:0036211,GO:0042306,GO:0042307,GO:0043044,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043486,GO:0043543,GO:0043933,GO:0043967,GO:0043968,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044728,GO:0045892,GO:0045934,GO:0046483,GO:0046822,GO:0046824,GO:0048518,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051171,GO:0051172,GO:0051222,GO:0051223,GO:0051252,GO:0051253,GO:0051276,GO:0051716,GO:0060255,GO:0060341,GO:0065007,GO:0070013,GO:0070201,GO:0070491,GO:0070603,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090087,GO:0090304,GO:0090316,GO:0097159,GO:0097346,GO:0140110,GO:1900180,GO:1900182,GO:1901360,GO:1901363,GO:1901564,GO:1902493,GO:1902494,GO:1902562,GO:1902679,GO:1903506,GO:1903507,GO:1903827,GO:1903829,GO:1904589,GO:1904591,GO:1904949,GO:1904951,GO:1990234,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.histone H2A acetylation
EggNOG OGsKOG2656@1,KOG2656@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko03036
Exons1
Model size180
Cds size156
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929303.2219384-UTR-H-paniculata_contig16344:5422..54461622929303.2219384-UTR-H-paniculata_contig16344:5422..5446Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16344 5423..5446 +
1691480807.6627474-UTR-H-paniculata_contig16344:5422..54461691480807.6627474-UTR-H-paniculata_contig16344:5422..5446Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16344 5423..5446 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929303.2337883-CDS-H-paniculata_contig16344:5446..56021622929303.2337883-CDS-H-paniculata_contig16344:5446..5602Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16344 5447..5602 +
1691480807.6756256-CDS-H-paniculata_contig16344:5446..56021691480807.6756256-CDS-H-paniculata_contig16344:5446..5602Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16344 5447..5602 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16344.3631.1prot_H-paniculata_contig16344.3631.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16344 5447..5602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16344.3631.1

>prot_H-paniculata_contig16344.3631.1 ID=prot_H-paniculata_contig16344.3631.1|Name=mRNA_H-paniculata_contig16344.3631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
MWSKLETDHLIGLALKYDLRWPVIKDRYKCTPDRPVQDLQHRFYDVANRL
QV
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mRNA from alignment at H-paniculata_contig16344:5423..5602+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16344.3631.1 ID=mRNA_H-paniculata_contig16344.3631.1|Name=mRNA_H-paniculata_contig16344.3631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=180bp|location=Sequence derived from alignment at H-paniculata_contig16344:5423..5602+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGTTGCTTTCGGAGAAGAACGCGATGTGGAGCAAATTGGAAACGGACCA
TCTGATCGGACTGGCTCTCAAGTATGACTTAAGGTGGCCGGTGATCAAGG
ATCGCTACAAGTGCACCCCAGATAGGCCGGTTCAAGATCTGCAGCACCGC
TTCTACGACGTGGCGAACCGCTTGCAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig16344:5423..5602+

>mRNA_H-paniculata_contig16344.3631.1 ID=mRNA_H-paniculata_contig16344.3631.1|Name=mRNA_H-paniculata_contig16344.3631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig16344:5423..5602+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGAGCAAATTGGAAACGGACCATCTGATCGGACTGGCTCTCAAGTA
TGACTTAAGGTGGCCGGTGATCAAGGATCGCTACAAGTGCACCCCAGATA
GGCCGGTTCAAGATCTGCAGCACCGCTTCTACGACGTGGCGAACCGCTTG
CAGGTGATGTGGAGCAAATTGGAAACGGACCATCTGATCGGACTGGCTCT
CAAGTATGACTTAAGGTGGCCGGTGATCAAGGATCGCTACAAGTGCACCC
CAGATAGGCCGGTTCAAGATCTGCAGCACCGCTTCTACGACGTGGCGAAC
CGCTTGCAGGTG
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