mRNA_H-paniculata_contig16319.3622.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16319.3622.1
Unique NamemRNA_H-paniculata_contig16319.3622.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16319.3622.1 vs. uniprot
Match: D8LP08_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP08_ECTSI)

HSP 1 Score: 229 bits (584), Expect = 2.430e-72
Identity = 126/182 (69.23%), Postives = 143/182 (78.57%), Query Frame = 1 
Query:  115 HHNEDFLFEQKLESVKAGLLCGGVAAVVRLLAVGAGAITPA-LVREVLDAPDAAASSVLFGVASGFAQGALFGLTYRYVVRSDRDTQGTITSTSXXXXXXXKKKNEPQMDGFTVSHLGDGCVAAFAITSALGQSEAPLSLAAGEFLNVFGRGGGLLEALAAVLLPALPFLPRAVGDLLLYSA 657
            HH+ DFLFEQKLESV+A +LCG V A  RLLAVGAGA+ P  L+RE L AP+ A SS+LFG+A+GFAQGALFGLTYRYVVRSDR+   + T+              PQMDGFTV HLGDGCVAAFA+TSALGQSEAPL+LAAGEF+ V  RGGG+LEALAAVLLPA PFLPRA  DL LYS+
Sbjct:   68 HHDSDFLFEQKLESVRAAVLCGSVGAASRLLAVGAGALLPGGLLREALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQSPSATTGEPPV---------PQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTLAAGEFVRVLWRGGGILEALAAVLLPAAPFLPRAAADLFLYSS 240
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BLAST of mRNA_H-paniculata_contig16319.3622.1 vs. uniprot
Match: A0A6H5KWW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWW8_9PHAE)

HSP 1 Score: 224 bits (570), Expect = 4.970e-69
Identity = 124/180 (68.89%), Postives = 140/180 (77.78%), Query Frame = 1 
Query:  121 NEDFLFEQKLESVKAGLLCGGVAAVVRLLAVGAGAITPA-LVREVLDAPDAAASSVLFGVASGFAQGALFGLTYRYVVRSDRDTQGTITSTSXXXXXXXKKKNEPQMDGFTVSHLGDGCVAAFAITSALGQSEAPLSLAAGEFLNVFGRGGGLLEALAAVLLPALPFLPRAVGDLLLYSA 657
            + DFLFEQKLESV+A +LCG V A  RLLAVGAG + P  L RE L AP+ A SS+LFG+A+GFAQGALFGLTYRYVVRSDR+   + T+              PQMDGFTV HLGDGCVAAFA+TSALGQSEAPL+LAAGEF+ V GRGGG+LEALAAVLLPA PFLPRA  DL LY+A
Sbjct:  162 DSDFLFEQKLESVRAAVLCGSVGATSRLLAVGAGGLLPGGLFREALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQSPSATTGEPPV---------PQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTLAAGEFVGVLGRGGGILEALAAVLLPAAPFLPRAAADLFLYTA 332
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BLAST of mRNA_H-paniculata_contig16319.3622.1 vs. uniprot
Match: A0A7S3URH4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3URH4_HETAK)

HSP 1 Score: 53.1 bits (126), Expect = 2.860e-5
Identity = 47/133 (35.34%), Postives = 64/133 (48.12%), Query Frame = 1 
Query:  217 AGAITPALVREVLDAPDAAASSVLFGVASGFAQGALFGLTYRYVVRSDRDTQGTITSTSXXXXXXXKKKNEPQMDGFTVSHLGDGCVAAFAITSALGQSEAPLSLAAGEF----------LNVFGRGGGLLEA 585
            A A+ P+L+   L A  A+A++ L  +  G A+GALFGL YRYVVR D                    + +P + GF+V  LGDG V++FA+TS L  ++  L   A  F          L     GGG L A
Sbjct:    7 AAALNPSLL---LVARPASAAADLVALGGGAAEGALFGLLYRYVVRGDLT------------------RPDPGL-GFSVKQLGDGVVSSFALTSVLAHNQENLVKVAEVFVLSLPTAISDLTSVPEGGGALAA 117
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16319.3622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LP08_ECTSI2.430e-7269.23Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KWW8_9PHAE4.970e-6968.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3URH4_HETAK2.860e-535.34Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16319contigH-paniculata_contig16319:119..1297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_007040.1
Exons2
Model size657
Cds size657
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929301.594801-CDS-H-paniculata_contig16319:118..4591622929301.594801-CDS-H-paniculata_contig16319:118..459Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16319 119..459 +
1691480807.0381343-CDS-H-paniculata_contig16319:118..4591691480807.0381343-CDS-H-paniculata_contig16319:118..459Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16319 119..459 +
1622929301.608984-CDS-H-paniculata_contig16319:981..12971622929301.608984-CDS-H-paniculata_contig16319:981..1297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16319 982..1297 +
1691480807.0471957-CDS-H-paniculata_contig16319:981..12971691480807.0471957-CDS-H-paniculata_contig16319:981..1297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16319 982..1297 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16319.3622.1prot_H-paniculata_contig16319.3622.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16319 119..1297 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16319.3622.1

>prot_H-paniculata_contig16319.3622.1 ID=prot_H-paniculata_contig16319.3622.1|Name=mRNA_H-paniculata_contig16319.3622.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=219bp
MKQDVDESAQSSPTIPTIPVTTTTATTASAAPAAGVVVHHNEDFLFEQKL
ESVKAGLLCGGVAAVVRLLAVGAGAITPALVREVLDAPDAAASSVLFGVA
SGFAQGALFGLTYRYVVRSDRDTQGTITSTSTTNTTTNKKKNEPQMDGFT
VSHLGDGCVAAFAITSALGQSEAPLSLAAGEFLNVFGRGGGLLEALAAVL
LPALPFLPRAVGDLLLYSA
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mRNA from alignment at H-paniculata_contig16319:119..1297+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16319.3622.1 ID=mRNA_H-paniculata_contig16319.3622.1|Name=mRNA_H-paniculata_contig16319.3622.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1179bp|location=Sequence derived from alignment at H-paniculata_contig16319:119..1297+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAACAGGACGTGGACGAATCAGCACAGTCATCTCCCACAATACCAAC
AATACCAGTGACGACGACGACGGCAACTACGGCATCGGCAGCTCCGGCAG
CAGGAGTAGTAGTTCACCACAACGAAGACTTCTTGTTCGAGCAAAAGCTG
GAGAGCGTCAAGGCCGGTCTGCTGTGCGGGGGGGTGGCTGCCGTGGTCCG
CCTGCTGGCTGTCGGTGCAGGCGCGATCACCCCGGCCTTGGTCAGGGAAG
TGCTCGACGCGCCTGACGCAGCAGCCTCGAGCGTGTTGTTCGGTGTTGCC
TCTGGCTTTGCACAAGGCGCGCTGTTCGGCTTGACCTATCGGTGAGTGTA
TTGCGATGTAGTGGGTTGGAAATGAGGGTTGCAGGGGTGGTGGTGGTGAT
GATGATGATGGTGGTGATGATGATGATGGTGGTGGTGATGATGGTGGTGG
TGGTGGTGATGGTGGTGGTGGTGGTGGTGATGATGATGGTGGTGGTGATG
ATGGTGGTGGTGGTGGTGGTGATGATGATGATGGTGGTGGTGATGATGGT
GGTGGTGGTGATGGTCTGGAATTGTCCCAAGTTACTCGTCTTTGTTCCCC
TCCCTAAGAAAGAATCTACATGAATGCCAATCATTTGCCCGTCGCGCCCT
TATATATTATTGTCTTGTTGAACCTACTTCTTTTTGCCTCTATTTGTGTT
GAAATGTCAAGTTTTAATTGATGCGTTCACAGCGAAACAAATGTCCACCA
TAAGGTGTAGATACGGTAGTGGATTTACTTTTGAGCCTCTCACCCCTTCC
CTCCCCGTTGACCGCTCTCATGAACTAAACCGCAAATCAACTGTTCAACG
ACTGGCACTTCAGGTACGTGGTACGATCAGATCGAGACACACAGGGGACC
ATCACCAGCACCAGTACCACCAACACCACTACCAACAAGAAAAAAAACGA
ACCGCAAATGGACGGCTTCACAGTCAGTCACCTCGGAGACGGATGTGTGG
CAGCCTTCGCCATAACCTCGGCACTGGGGCAAAGCGAAGCGCCGCTGTCG
CTGGCGGCGGGGGAATTCTTGAACGTCTTCGGGCGAGGCGGGGGGTTGTT
GGAGGCGTTAGCGGCGGTTTTGTTACCTGCCCTGCCTTTTCTGCCGCGGG
CCGTTGGGGATCTGCTGCTGTACTCTGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig16319:119..1297+

>mRNA_H-paniculata_contig16319.3622.1 ID=mRNA_H-paniculata_contig16319.3622.1|Name=mRNA_H-paniculata_contig16319.3622.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1314bp|location=Sequence derived from alignment at H-paniculata_contig16319:119..1297+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAACAGGACGTGGACGAATCAGCACAGTCATCTCCCACAATACCAAC
AATACCAGTGACGACGACGACGGCAACTACGGCATCGGCAGCTCCGGCAG
CAGGAGTAGTAGTTCACCACAACGAAGACTTCTTGTTCGAGCAAAAGCTG
GAGAGCGTCAAGGCCGGTCTGCTGTGCGGGGGGGTGGCTGCCGTGGTCCG
CCTGCTGGCTGTCGGTGCAGGCGCGATCACCCCGGCCTTGGTCAGGGAAG
TGCTCGACGCGCCTGACGCAGCAGCCTCGAGCGTGTTGTTCGGTGTTGCC
TCTGGCTTTGCACAAGGCGCGCTGTTCGGCTTGACCTATCGATGAAACAG
GACGTGGACGAATCAGCACAGTCATCTCCCACAATACCAACAATACCAGT
GACGACGACGACGGCAACTACGGCATCGGCAGCTCCGGCAGCAGGAGTAG
TAGTTCACCACAACGAAGACTTCTTGTTCGAGCAAAAGCTGGAGAGCGTC
AAGGCCGGTCTGCTGTGCGGGGGGGTGGCTGCCGTGGTCCGCCTGCTGGC
TGTCGGTGCAGGCGCGATCACCCCGGCCTTGGTCAGGGAAGTGCTCGACG
CGCCTGACGCAGCAGCCTCGAGCGTGTTGTTCGGTGTTGCCTCTGGCTTT
GCACAAGGCGCGCTGTTCGGCTTGACCTATCGGTACGTGGTACGATCAGA
TCGAGACACACAGGGGACCATCACCAGCACCAGTACCACCAACACCACTA
CCAACAAGAAAAAAAACGAACCGCAAATGGACGGCTTCACAGTCAGTCAC
CTCGGAGACGGATGTGTGGCAGCCTTCGCCATAACCTCGGCACTGGGGCA
AAGCGAAGCGCCGCTGTCGCTGGCGGCGGGGGAATTCTTGAACGTCTTCG
GGCGAGGCGGGGGGTTGTTGGAGGCGTTAGCGGCGGTTTTGTTACCTGCC
CTGCCTTTTCTGCCGCGGGCCGTTGGGGATCTGCTGCTGTACTCTGCTGT
ACGTGGTACGATCAGATCGAGACACACAGGGGACCATCACCAGCACCAGT
ACCACCAACACCACTACCAACAAGAAAAAAAACGAACCGCAAATGGACGG
CTTCACAGTCAGTCACCTCGGAGACGGATGTGTGGCAGCCTTCGCCATAA
CCTCGGCACTGGGGCAAAGCGAAGCGCCGCTGTCGCTGGCGGCGGGGGAA
TTCTTGAACGTCTTCGGGCGAGGCGGGGGGTTGTTGGAGGCGTTAGCGGC
GGTTTTGTTACCTGCCCTGCCTTTTCTGCCGCGGGCCGTTGGGGATCTGC
TGCTGTACTCTGCT
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