mRNA_H-paniculata_contig16287.3604.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16287.3604.1
Unique NamemRNA_H-paniculata_contig16287.3604.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig16287.3604.1 vs. uniprot
Match: D8LD28_ECTSI (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD28_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 1.440e-41
Identity = 73/105 (69.52%), Postives = 88/105 (83.81%), Query Frame = 1
Query:    4 RYRTAHGISLGEHKAFLRQFDWKEEEFEAGFQKGVAPRNGSKDFLKYEALVQKELAKGEVREESRQHLRQFRAQAGIDAQEHLLVLEKQGWTADDYEVGGKGKAA 318
            RYR  HGIS  EH+  L++ +W +EEFEAGFQKGV PR+GSK FL YEAL+++ELAKG+V ++ RQ LR+FR +AGIDAQEHL+ LEKQGWTADDYEVG KGKAA
Sbjct:  401 RYRDMHGISSEEHRELLKEHEWTKEEFEAGFQKGVTPRDGSKHFLNYEALLRRELAKGKVEDDGRQSLREFRTRAGIDAQEHLIALEKQGWTADDYEVGAKGKAA 505          
BLAST of mRNA_H-paniculata_contig16287.3604.1 vs. uniprot
Match: D8LD27_ECTSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD27_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 1.240e-36
Identity = 69/105 (65.71%), Postives = 81/105 (77.14%), Query Frame = 1
Query:    4 RYRTAHGISLGEHKAFLRQFDWKEEEFEAGFQKGVAPRNGSKDFLKYEALVQKELAKGEVREESRQHLRQFRAQAGIDAQEHLLVLEKQGWTADDYEVGGKGKAA 318
            RYR  HGI+L EHK  L +  W EEEFE GFQ GVAPR GS+ F+KYEALVQ+ELA+GEV+ ES+ +L  FR  AGIDAQEH+L L KQGWT DDYEVG KG ++
Sbjct:  273 RYRETHGIALEEHKFMLSERGWTEEEFEVGFQPGVAPRQGSQHFVKYEALVQRELAQGEVKPESKLYLLNFRKHAGIDAQEHILALGKQGWTVDDYEVGVKGMSS 377          
BLAST of mRNA_H-paniculata_contig16287.3604.1 vs. uniprot
Match: A0A6H5KTM1_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTM1_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 5.410e-35
Identity = 68/105 (64.76%), Postives = 79/105 (75.24%), Query Frame = 1
Query:    4 RYRTAHGISLGEHKAFLRQFDWKEEEFEAGFQKGVAPRNGSKDFLKYEALVQKELAKGEVREESRQHLRQFRAQAGIDAQEHLLVLEKQGWTADDYEVGGKGKAA 318
            RYR  HGI+L EH   L +  W EEEF+ GFQ GVAPR GS+ F+KYEALVQ+ELAKGEV+ ES+  L  FR  AGIDAQEH+L L KQGWT DDYEVG KG ++
Sbjct:  468 RYRETHGIALEEHNFILAERGWTEEEFDVGFQPGVAPRQGSQHFVKYEALVQRELAKGEVKPESKLFLLNFRRHAGIDAQEHILALGKQGWTVDDYEVGVKGMSS 572          
BLAST of mRNA_H-paniculata_contig16287.3604.1 vs. uniprot
Match: D8LD39_ECTSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD39_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 4.120e-33
Identity = 60/99 (60.61%), Postives = 83/99 (83.84%), Query Frame = 1
Query:    4 RYRTAHGISLGEHKAFLRQFDWKEEEFEAGFQKGVAPRNGSKDFLKYEALVQKELAKGEVREESRQHLRQFRAQAGIDAQEHLLVLEKQGWTADDYEVG 300
            RYR  HGIS+ EH   L++ +W  +EF+AGF++GVAP++ S++FLKYEAL++KELAKGE+  E++ +LR+FR+Q GIDAQEHL+ +EKQGWTAD+YE G
Sbjct:  204 RYREGHGISMAEHFERLKENNWTHKEFQAGFREGVAPKDLSENFLKYEALLRKELAKGELNPEAKSNLRKFRSQKGIDAQEHLIAVEKQGWTADEYEAG 302          
BLAST of mRNA_H-paniculata_contig16287.3604.1 vs. uniprot
Match: D7FN16_ECTSI (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN16_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 1.710e-32
Identity = 65/105 (61.90%), Postives = 79/105 (75.24%), Query Frame = 1
Query:    1 RRYRTAHGISLGEHKAFLRQFDWKEEEFEAGFQKGVAPRNGSKDFLKYEALVQKELAKGEVREESRQHLRQFRAQAGIDAQEHLLVLEKQGWTADDYEVGGKGKA 315
            RRYR  H IS   HK FL++  W EEE+  GFQ+  APR+GS  FL+YEALV +EL+ GEV  E+R +LR+FR+QA IDAQEHLL ++KQGWTADDYE G KG A
Sbjct:  436 RRYRETHHISEEVHKGFLKEQGWTEEEYYMGFQQNKAPRDGSARFLEYEALVSRELSGGEVTPEARSNLRKFRSQAHIDAQEHLLAIQKQGWTADDYEAGEKGAA 540          
BLAST of mRNA_H-paniculata_contig16287.3604.1 vs. uniprot
Match: D8LD37_ECTSI (Cyclic nucleotide-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD37_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 1.940e-32
Identity = 65/101 (64.36%), Postives = 78/101 (77.23%), Query Frame = 1
Query:    4 RYRTAHGISLGEHKAFLRQFDWKEEEFEAGFQKGVAPRNGSKDFLKYEALVQKELAKGEVREESRQHLRQFRAQAGIDAQEHLLVLEKQGWTADDYEVGGK 306
            RYR  HGIS  EH   LR   W EEEFEAGFQ GVA +N    FL+YEAL++KELAKG+V+ ++R +LR+FR+Q GIDAQEHL+ +EKQGWTADDYE G K
Sbjct:  431 RYREGHGISFDEHLDRLRDNKWTEEEFEAGFQMGVATQN----FLEYEALLRKELAKGKVKPDARSNLRKFRSQVGIDAQEHLIAVEKQGWTADDYEAGAK 527          
BLAST of mRNA_H-paniculata_contig16287.3604.1 vs. uniprot
Match: D8LD36_ECTSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD36_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 3.350e-32
Identity = 63/102 (61.76%), Postives = 83/102 (81.37%), Query Frame = 1
Query:    4 RYRTAHGISLGEHKAFLRQFDWKEEEFEAGFQKGVAPRNGSKD-FLKYEALVQKELAKGEVREESRQHLRQFRAQAGIDAQEHLLVLEKQGWTADDYEVGGK 306
            RYR  H IS+ EH+  L++  W EE+FEAGFQ+  AP++ SK+ FLKYEAL++ EL  GEV+ E+R +LR+FR+QAGIDAQEHLL +EKQGWTAD+YE+GG+
Sbjct:  421 RYRGGHRISVAEHRERLKEHGWTEEDFEAGFQELAAPKDMSKENFLKYEALLKSELDTGEVKPEARSNLRKFRSQAGIDAQEHLLAIEKQGWTADEYEIGGR 522          
BLAST of mRNA_H-paniculata_contig16287.3604.1 vs. uniprot
Match: A0A6H5JW21_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW21_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 3.880e-23
Identity = 58/147 (39.46%), Postives = 81/147 (55.10%), Query Frame = 1
Query:    7 YRTAHGISLGEHKAFLRQFDWKEEEFEAGFQKGVAPRNGSKDFLKYEALVQKELAKGE-------------------------------------------------VREESRQHLRQFRAQAGIDAQEHLLVLEKQGWTADDYEVG 300
            YR  HGIS+ EH   L++ +W  +EF+AGF++GVAP++ S++FLKYEAL++ ELAKGE                                                 +  E++ +LR+FR+Q GIDAQEHL+ +EKQGWTAD+YE G
Sbjct:  300 YREGHGISMAEHFQRLKENNWTHKEFQAGFREGVAPKDLSENFLKYEALLRNELAKGEYHFCAFFFCCVFVIASSCCNEPPRSPSYRQFASCLVLVSFSPNGFDDDQLNPEAKSNLRKFRSQKGIDAQEHLIAVEKQGWTADEYEAG 446          
BLAST of mRNA_H-paniculata_contig16287.3604.1 vs. uniprot
Match: A0A6H5K3S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3S2_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 5.780e-13
Identity = 41/99 (41.41%), Postives = 55/99 (55.56%), Query Frame = 1
Query:    4 RYRTAHGISLGEHKAFLRQFDWKEEEFEAGFQKGVAPRNGSKDFLKYEALVQKELAKGEVREESRQHLRQFRAQAGIDAQEHLLVLEKQGWTADDYEVG 300
            RYR  HGIS+ EH   L++ +W  +EF+AGF++GVAP++  ++FLKYEAL++ ELAKGE                              GWTAD YE G
Sbjct:   93 RYREDHGISMAEHFERLKETNWTHKEFQAGFREGVAPKDLLENFLKYEALLRNELAKGE------------------------------GWTADKYEAG 161          
BLAST of mRNA_H-paniculata_contig16287.3604.1 vs. uniprot
Match: A0A6H5K0X4_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0X4_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 6.270e-12
Identity = 37/60 (61.67%), Postives = 45/60 (75.00%), Query Frame = 1
Query:    4 RYRTAHGISLGEHKAFLRQFDWKEEEFEAGFQKGVAPRNGSKDFLKYEALVQKELAKGEV 183
            RYR  HGIS  EH   L++ +W EEEFEAGFQ GVA +N    FL+YEAL++KELAKG+V
Sbjct:  204 RYREGHGISFEEHLDRLKENNWTEEEFEAGFQTGVATQN----FLEYEALLRKELAKGKV 259          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16287.3604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LD28_ECTSI1.440e-4169.52Cyclic nucleotide-binding domain-containing protei... [more]
D8LD27_ECTSI1.240e-3665.71Cyclic nucleotide-binding domain-containing protei... [more]
A0A6H5KTM1_9PHAE5.410e-3564.76Cyclic nucleotide-binding domain-containing protei... [more]
D8LD39_ECTSI4.120e-3360.61Cyclic nucleotide-binding domain-containing protei... [more]
D7FN16_ECTSI1.710e-3261.90Cyclic nucleotide-binding domain-containing protei... [more]
D8LD37_ECTSI1.940e-3264.36Cyclic nucleotide-binding protein n=1 Tax=Ectocarp... [more]
D8LD36_ECTSI3.350e-3261.76Cyclic nucleotide-binding domain-containing protei... [more]
A0A6H5JW21_9PHAE3.880e-2339.46Cyclic nucleotide-binding domain-containing protei... [more]
A0A6H5K3S2_9PHAE5.780e-1341.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0X4_9PHAE6.270e-1261.67Cyclic nucleotide-binding domain-containing protei... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16287contigH-paniculata_contig16287:4314..5560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.2
Seed ortholog evalue5.8e-28
Seed eggNOG ortholog2880.D7FN16
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Cyclic nucleotide-monophosphate binding domain
EggNOG OGs2DQI1@1,2SD0D@2759
Ec32 ortholog descriptionRmlC-like jelly roll fold
Ec32 orthologEc-11_000190.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size321
Cds size321
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16287.3604.1prot_H-paniculata_contig16287.3604.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16287 4314..5560 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929298.8033464-CDS-H-paniculata_contig16287:4313..43641622929298.8033464-CDS-H-paniculata_contig16287:4313..4364Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16287 4314..4364 -
1691480805.9629326-CDS-H-paniculata_contig16287:4313..43641691480805.9629326-CDS-H-paniculata_contig16287:4313..4364Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16287 4314..4364 -
1622929298.818643-CDS-H-paniculata_contig16287:5019..51091622929298.818643-CDS-H-paniculata_contig16287:5019..5109Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16287 5020..5109 -
1691480805.9758406-CDS-H-paniculata_contig16287:5019..51091691480805.9758406-CDS-H-paniculata_contig16287:5019..5109Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16287 5020..5109 -
1622929298.837382-CDS-H-paniculata_contig16287:5380..55601622929298.837382-CDS-H-paniculata_contig16287:5380..5560Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16287 5381..5560 -
1691480805.9836617-CDS-H-paniculata_contig16287:5380..55601691480805.9836617-CDS-H-paniculata_contig16287:5380..5560Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16287 5381..5560 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16287.3604.1

>prot_H-paniculata_contig16287.3604.1 ID=prot_H-paniculata_contig16287.3604.1|Name=mRNA_H-paniculata_contig16287.3604.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
RRYRTAHGISLGEHKAFLRQFDWKEEEFEAGFQKGVAPRNGSKDFLKYEA
LVQKELAKGEVREESRQHLRQFRAQAGIDAQEHLLVLEKQGWTADDYEVG
GKGKAAE
back to top

mRNA from alignment at H-paniculata_contig16287:4314..5560-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16287.3604.1 ID=mRNA_H-paniculata_contig16287.3604.1|Name=mRNA_H-paniculata_contig16287.3604.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1247bp|location=Sequence derived from alignment at H-paniculata_contig16287:4314..5560- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCAGGTACCGAACCGCCCACGGCATATCTTTGGGCGAGCATAAGGCATT TCTTCGGCAGTTTGACTGGAAAGAGGAGGAATTCGAGGCCGGTTTCCAGA AGGGCGTGGCCCCCCGGAATGGGTCCAAAGACTTCCTCAAGTACGAGGCT TTGGTCCAGAAGGAGCTCGCCAAGGGAGAGGTAACAGAAGGGATCAGGAC AGGAGGGGTTGGGGTGAACCGTTACTCGGACGCAAAGAGTATGTAGCTGA CCATACTGCGATGTTGTGGGGTCTAGAGCTAAACCCACCGTTGTTCAGCG ATGTTCGGTAGGACTGTGTTGAGATGAGGTGGTATTTGTGTAGCACCCAC ACCTAAAACAACCGTGTCAAAGCCCATCCCTCTTTAGTACATTCAAGTAC CAATGATTAACATGACGGTAACGCGTTAATGATGTGGCCCATGCTCTTTA GGTGCGTGAGGAGTCTCGGCAACACCTCAGGCAGTTCCGCGCACAGGCTG GTATAGATGCACAAGAGCACCTCTTGGTGCTCGAGAAACAGGTACGTGGT AGTCCATTCGACTCTTTGCCTGCCCGTGCCCAACTGTTCGATTCTGTGAA ATAAATACTAATCTCACGAATGGCTTGTATTTGGAGCGGCAAATATTGCA TCTTTTGATGTGCCTGTCCCTGAAAAAATATTTACAACAAGCTTGCAGAA TATATTCGAAGGCTCTTCGCGTTATTTGGAAAAGGTTACGAGGTTATGAC AACTGATGAATATTTTGTTCGAATGCAAGGTAAAACATCACACGAAAGTG GATGCCTCACGTGTAACAGGACTAGCTATGAAAAGGGATATATCCTCTGC TATAGCATCAAAATCTTGTCTAATCGAAATCAACTACCTAAACCACGTGA AAAAGGTCATGGTCCAAAATAGCGGCGAAAGCGAGAACATTCCCGATAGC CGAAATTGTCGAAGTTTGTAACCAAAAAAAATCATGGTGGCACATTCCAA CGGAGTCTCCAACAGCGCGTATGGATTCATCCAGTTTTATCTTTCCGTCG GTGACACCGGTTCAACAAAGTTTGCAACAGGGTCAAGTTGCGACTTGGAT TTTGCCGACAAAGATCGGATGGTTTCGATTTCAGATGTCGGAGTCACGCC CTGAATAGTCCCGCACTCCTCTGTTCCTCCTGATATCTCTGACTAGGGGT GGACTGCCGACGACTACGAGGTTGGAGGCAAGGGTAAAGCTGCGGAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig16287:4314..5560-

>mRNA_H-paniculata_contig16287.3604.1 ID=mRNA_H-paniculata_contig16287.3604.1|Name=mRNA_H-paniculata_contig16287.3604.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig16287:4314..5560- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCAGGTACCGAACCGCCCACGGCATATCTTTGGGCGAGCATAAGGCATT
TCTTCGGCAGTTTGACTGGAAAGAGGAGGAATTCGAGGCCGGTTTCCAGA
AGGGCGTGGCCCCCCGGAATGGGTCCAAAGACTTCCTCAAGTACGAGGCT
TTGGTCCAGAAGGAGCTCGCCAAGGGAGAGCGCAGGTACCGAACCGCCCA
CGGCATATCTTTGGGCGAGCATAAGGCATTTCTTCGGCAGTTTGACTGGA
AAGAGGAGGAATTCGAGGCCGGTTTCCAGAAGGGCGTGGCCCCCCGGAAT
GGGTCCAAAGACTTCCTCAAGTACGAGGCTTTGGTCCAGAAGGAGCTCGC
CAAGGGAGAGGTGCGTGAGGAGTCTCGGCAACACCTCAGGCAGTTCCGCG
CACAGGCTGGTATAGATGCACAAGAGCACCTCTTGGTGCTCGAGAAACAG
GTGCGTGAGGAGTCTCGGCAACACCTCAGGCAGTTCCGCGCACAGGCTGG
TATAGATGCACAAGAGCACCTCTTGGTGCTCGAGAAACAGGGGTGGACTG
CCGACGACTACGAGGTTGGAGGCAAGGGTAAAGCTGCGGAAGGGTGGACT
GCCGACGACTACGAGGTTGGAGGCAAGGGTAAAGCTGCGGAA
back to top