mRNA_H-paniculata_contig10547.360.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10547.360.1
Unique NamemRNA_H-paniculata_contig10547.360.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig10547.360.1 vs. uniprot
Match: D7FGT3_ECTSI (ABC1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FGT3_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 1.050e-33
Identity = 57/66 (86.36%), Postives = 64/66 (96.97%), Query Frame = 1
Query:    1 QVPDVYWNLTSERVVTMEYVPGIKINNIAEIEKRGIDRGVLAKRSAEAYLTQLCRHGFFHCDPHPG 198
            +VPDVYWN+TSERVVTME+VPG+KINNI EI++RGIDR +LAKRSAEAYLTQLCRHGFFHCDPHPG
Sbjct:  394 KVPDVYWNMTSERVVTMEFVPGVKINNIDEIDRRGIDRKLLAKRSAEAYLTQLCRHGFFHCDPHPG 459          
BLAST of mRNA_H-paniculata_contig10547.360.1 vs. uniprot
Match: A0A7S0XEN1_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XEN1_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.380e-30
Identity = 56/66 (84.85%), Postives = 61/66 (92.42%), Query Frame = 1
Query:    1 QVPDVYWNLTSERVVTMEYVPGIKINNIAEIEKRGIDRGVLAKRSAEAYLTQLCRHGFFHCDPHPG 198
            +VPDVY NLTS RVVTMEYVPGIKIN+IA+IE  GIDR +LAKRSAE+YLTQLCRHGFFHCDPHPG
Sbjct:  230 KVPDVYLNLTSPRVVTMEYVPGIKINDIAKIEAAGIDRKLLAKRSAESYLTQLCRHGFFHCDPHPG 295          
BLAST of mRNA_H-paniculata_contig10547.360.1 vs. uniprot
Match: A0A7S2P799_BIGNA (Hypothetical protein (Fragment) n=2 Tax=Bigelowiella natans TaxID=227086 RepID=A0A7S2P799_BIGNA)

HSP 1 Score: 119 bits (298), Expect = 9.140e-30
Identity = 51/69 (73.91%), Postives = 61/69 (88.41%), Query Frame = 1
Query:    1 QVPDVYWNLTSERVVTMEYVPGIKINNIAEIEKRGIDRGVLAKRSAEAYLTQLCRHGFFHCDPHPGKRG 207
            +VPD+YW  TS+RV+TMEYVP +KINNI EIE+RGIDR +LAKRSA++YL QLCR+GFFHCDPHPG  G
Sbjct:  452 KVPDIYWETTSKRVLTMEYVPSVKINNIEEIERRGIDRKLLAKRSADSYLKQLCRYGFFHCDPHPGNVG 520          
BLAST of mRNA_H-paniculata_contig10547.360.1 vs. uniprot
Match: A0A482SBS9_9ARCH (AarF/ABC1/UbiB kinase family protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SBS9_9ARCH)

HSP 1 Score: 117 bits (294), Expect = 1.380e-29
Identity = 52/72 (72.22%), Postives = 60/72 (83.33%), Query Frame = 1
Query:    1 QVPDVYWNLTSERVVTMEYVPGIKINNIAEIEKRGIDRGVLAKRSAEAYLTQLCRHGFFHCDPHPGKRGIGA 216
            +VPDVY+N+T+  V+ MEYVPGIK+NNIA IE  GIDR +LAKRSAE+YLTQLCRHGFFHCDPHPG     A
Sbjct:  199 KVPDVYFNMTTTNVIVMEYVPGIKVNNIAAIEAAGIDRQLLAKRSAESYLTQLCRHGFFHCDPHPGNLACDA 270          
BLAST of mRNA_H-paniculata_contig10547.360.1 vs. uniprot
Match: A0A7S2V580_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V580_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.400e-29
Identity = 48/66 (72.73%), Postives = 60/66 (90.91%), Query Frame = 1
Query:    1 QVPDVYWNLTSERVVTMEYVPGIKINNIAEIEKRGIDRGVLAKRSAEAYLTQLCRHGFFHCDPHPG 198
            +VP++ W L S+RV+TMEYVPG+KIN+I EIE+RGI+R +LA RSAE+YLTQLCR+GFFHCDPHPG
Sbjct:   49 KVPEIKWGLVSKRVLTMEYVPGVKINDIKEIERRGINRDLLAARSAESYLTQLCRYGFFHCDPHPG 114          
BLAST of mRNA_H-paniculata_contig10547.360.1 vs. uniprot
Match: A0A7S0H9B0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H9B0_9EUKA)

HSP 1 Score: 114 bits (284), Expect = 9.280e-28
Identity = 49/69 (71.01%), Postives = 60/69 (86.96%), Query Frame = 1
Query:    1 QVPDVYWNLTSERVVTMEYVPGIKINNIAEIEKRGIDRGVLAKRSAEAYLTQLCRHGFFHCDPHPGKRG 207
            +VP +YW+ +S+RV+TMEYVP +KINNI EIEKRGIDR  LA+RSA++YL QLCR+GFFHCDPHPG  G
Sbjct:  324 KVPKIYWDTSSKRVLTMEYVPSVKINNIEEIEKRGIDRKKLAQRSADSYLKQLCRYGFFHCDPHPGNVG 392          
BLAST of mRNA_H-paniculata_contig10547.360.1 vs. uniprot
Match: A0A7S4D846_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D846_HETAK)

HSP 1 Score: 113 bits (282), Expect = 1.790e-27
Identity = 48/66 (72.73%), Postives = 60/66 (90.91%), Query Frame = 1
Query:    1 QVPDVYWNLTSERVVTMEYVPGIKINNIAEIEKRGIDRGVLAKRSAEAYLTQLCRHGFFHCDPHPG 198
            +VPDV W+  S RV+TMEYVPGIKIN++ EI++RGIDR +LA+RSAE+YLTQLCR+G+FHCDPHPG
Sbjct:  374 KVPDVEWDKVSSRVITMEYVPGIKINDLEEIDRRGIDRKLLARRSAESYLTQLCRNGYFHCDPHPG 439          
BLAST of mRNA_H-paniculata_contig10547.360.1 vs. uniprot
Match: A0A7S2TV21_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TV21_9EUKA)

HSP 1 Score: 111 bits (277), Expect = 6.780e-27
Identity = 47/73 (64.38%), Postives = 60/73 (82.19%), Query Frame = 1
Query:    1 QVPDVYWNLTSERVVTMEYVPGIKINNIAEIEKRGIDRGVLAKRSAEAYLTQLCRHGFFHCDPHPGKRGIGAR 219
            +VP +YWN TS RV+TMEYVP  KIN+I +I+ +GID+ +LAKRSA++YL QLC+HGFFHCDPHPG  G  A+
Sbjct:  205 KVPKIYWNTTSPRVLTMEYVPSTKINDIEKIQAQGIDQKLLAKRSADSYLAQLCKHGFFHCDPHPGNVGCDAK 277          
BLAST of mRNA_H-paniculata_contig10547.360.1 vs. uniprot
Match: A0A7S2S605_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S605_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.960e-26
Identity = 48/72 (66.67%), Postives = 59/72 (81.94%), Query Frame = 1
Query:    1 QVPDVYWNLTSERVVTMEYVPGIKINNIAEIEKRGIDRGVLAKRSAEAYLTQLCRHGFFHCDPHPGKRGIGA 216
            +VP ++W+  SE+V+TMEYVPGIKI++ A I+  GIDR VLAKRSAE+Y+TQLCRHGFFHCDPHPG     A
Sbjct:  389 KVPKIFWSRVSEQVLTMEYVPGIKISDTAAIDACGIDRKVLAKRSAESYMTQLCRHGFFHCDPHPGNLACDA 460          
BLAST of mRNA_H-paniculata_contig10547.360.1 vs. uniprot
Match: A0A4D9D8Z7_9STRA (ABC1 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D8Z7_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.630e-25
Identity = 45/66 (68.18%), Postives = 55/66 (83.33%), Query Frame = 1
Query:    1 QVPDVYWNLTSERVVTMEYVPGIKINNIAEIEKRGIDRGVLAKRSAEAYLTQLCRHGFFHCDPHPG 198
            +VP +YW  TS RV+ MEY PGIK+++I +I+  GIDR +LAKRSAE+YL QLCRHGFFHCDPHPG
Sbjct:  472 KVPKIYWEFTSRRVLAMEYCPGIKVSDIEKIDAAGIDRKLLAKRSAESYLFQLCRHGFFHCDPHPG 537          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10547.360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FGT3_ECTSI1.050e-3386.36ABC1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S0XEN1_9STRA1.380e-3084.85Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7S2P799_BIGNA9.140e-3073.91Hypothetical protein (Fragment) n=2 Tax=Bigelowiel... [more]
A0A482SBS9_9ARCH1.380e-2972.22AarF/ABC1/UbiB kinase family protein (Fragment) n=... [more]
A0A7S2V580_9STRA1.400e-2972.73Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S0H9B0_9EUKA9.280e-2871.01Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A7S4D846_HETAK1.790e-2772.73Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2TV21_9EUKA6.780e-2764.38Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S2S605_9STRA2.960e-2666.67Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4D9D8Z7_9STRA2.630e-2568.18ABC1 domain-containing protein n=2 Tax=Monodopsida... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10547contigH-paniculata_contig10547:8043..8267 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.7
Seed ortholog evalue1.4e-28
Seed eggNOG ortholog2880.D7FGT3
KEGG koko:K08869
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of tocopherol cyclase activity
EggNOG OGsCOG0661@1,KOG1235@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01001
Exons1
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928757.910839-CDS-H-paniculata_contig10547:8042..82671622928757.910839-CDS-H-paniculata_contig10547:8042..8267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10547 8043..8267 -
1691480608.085056-CDS-H-paniculata_contig10547:8042..82671691480608.085056-CDS-H-paniculata_contig10547:8042..8267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10547 8043..8267 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10547.360.1prot_H-paniculata_contig10547.360.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10547 8043..8267 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10547.360.1

>prot_H-paniculata_contig10547.360.1 ID=prot_H-paniculata_contig10547.360.1|Name=mRNA_H-paniculata_contig10547.360.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
QVPDVYWNLTSERVVTMEYVPGIKINNIAEIEKRGIDRGVLAKRSAEAYL
TQLCRHGFFHCDPHPGKRGIGARTR
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mRNA from alignment at H-paniculata_contig10547:8043..8267-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10547.360.1 ID=mRNA_H-paniculata_contig10547.360.1|Name=mRNA_H-paniculata_contig10547.360.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=225bp|location=Sequence derived from alignment at H-paniculata_contig10547:8043..8267- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGCCGGACGTGTACTGGAATTTGACTTCCGAGCGCGTGGTGACCAT GGAGTACGTGCCTGGCATAAAGATCAACAATATCGCTGAGATAGAGAAGC GGGGTATCGACCGCGGGGTATTGGCCAAGCGCTCGGCTGAGGCGTACTTG ACACAGCTGTGCAGGCACGGTTTCTTCCATTGCGATCCTCACCCAGGTAA GCGTGGCATCGGGGCGCGTACTCGA
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Coding sequence (CDS) from alignment at H-paniculata_contig10547:8043..8267-

>mRNA_H-paniculata_contig10547.360.1 ID=mRNA_H-paniculata_contig10547.360.1|Name=mRNA_H-paniculata_contig10547.360.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig10547:8043..8267- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGCCGGACGTGTACTGGAATTTGACTTCCGAGCGCGTGGTGACCAT
GGAGTACGTGCCTGGCATAAAGATCAACAATATCGCTGAGATAGAGAAGC
GGGGTATCGACCGCGGGGTATTGGCCAAGCGCTCGGCTGAGGCGTACTTG
ACACAGCTGTGCAGGCACGGTTTCTTCCATTGCGATCCTCACCCAGGTAA
GCGTGGCATCGGGGCGCGTACTCGACAGGTGCCGGACGTGTACTGGAATT
TGACTTCCGAGCGCGTGGTGACCATGGAGTACGTGCCTGGCATAAAGATC
AACAATATCGCTGAGATAGAGAAGCGGGGTATCGACCGCGGGGTATTGGC
CAAGCGCTCGGCTGAGGCGTACTTGACACAGCTGTGCAGGCACGGTTTCT
TCCATTGCGATCCTCACCCAGGTAAGCGTGGCATCGGGGCGCGTACTCGA
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