mRNA_H-paniculata_contig16251.3595.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16251.3595.1
Unique NamemRNA_H-paniculata_contig16251.3595.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16251.3595.1 vs. uniprot
Match: A0A6H5K9K6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K6_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 3.540e-17
Identity = 50/114 (43.86%), Postives = 71/114 (62.28%), Query Frame = 1 
Query:    7 VTAAGTPEAE*MAL-EMVNEVLFLRQVEAFIMPALEHYPAIMKEDNQGAKKIAHNKYSSRRARHIDVKHHIVRDSVEAGKFGVVYVGTGEQHVDVLKKALERSSVQKHVNALMN 345
            + +  T EAE +A  E V E LF+R V +FI P        + EDNQGA  +  N +SS R++HIDV+ H +R+  ++G+  V Y+ T EQH D+L KAL R+ ++ H NALMN
Sbjct:  255 IVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKALGRTKLEDHRNALMN 368
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BLAST of mRNA_H-paniculata_contig16251.3595.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.260e-16
Identity = 50/114 (43.86%), Postives = 71/114 (62.28%), Query Frame = 1 
Query:    7 VTAAGTPEAE*MAL-EMVNEVLFLRQVEAFIMPALEHYPAIMKEDNQGAKKIAHNKYSSRRARHIDVKHHIVRDSVEAGKFGVVYVGTGEQHVDVLKKALERSSVQKHVNALMN 345
            + +  T EAE +A  E V E LF+R V +FI P        + EDNQGA  +  N +SS R++HIDV+ H +R+  ++G+  V Y+ T EQH D+L KAL R+ ++ H NALMN
Sbjct: 1130 IVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKALGRTKLEDHRNALMN 1243
[Close]
BLAST of mRNA_H-paniculata_contig16251.3595.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.350e-16
Identity = 50/114 (43.86%), Postives = 71/114 (62.28%), Query Frame = 1 
Query:    7 VTAAGTPEAE*MAL-EMVNEVLFLRQVEAFIMPALEHYPAIMKEDNQGAKKIAHNKYSSRRARHIDVKHHIVRDSVEAGKFGVVYVGTGEQHVDVLKKALERSSVQKHVNALMN 345
            + +  T EAE +A  E V E LF+R V +FI P        + EDNQGA  +  N +SS R++HIDV+ H +R+  ++G+  V Y+ T EQH D+L KAL R+ ++ H NALMN
Sbjct: 1683 IVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKALGRTKLEDHRNALMN 1796
[Close]
BLAST of mRNA_H-paniculata_contig16251.3595.1 vs. uniprot
Match: A0A6H5JNH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNH6_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 4.140e-15
Identity = 45/110 (40.91%), Postives = 69/110 (62.73%), Query Frame = 1 
Query:   19 GTPEAE*MAL-EMVNEVLFLRQVEAFIMPALEHYPAIMKEDNQGAKKIAHNKYSSRRARHIDVKHHIVRDSVEAGKFGVVYVGTGEQHVDVLKKALERSSVQKHVNALMN 345
             T EAE +A+ +++ EVLFLRQV  F++P        + EDNQGA +IAHN  ++  ++HIDV+HH +R+ VE  +  + +V +  QH D L KA+ + S   H + +MN
Sbjct:    8 STTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMN 117
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BLAST of mRNA_H-paniculata_contig16251.3595.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 8.290e-14
Identity = 46/110 (41.82%), Postives = 70/110 (63.64%), Query Frame = 1 
Query:   19 GTPEAE*MAL-EMVNEVLFLRQVEAFIMPALEHYPAIMKEDNQGAKKIAHNKYSSRRARHIDVKHHIVRDSVEAGKFGVVYVGTGEQHVDVLKKALERSSVQKHVNALMN 345
             T EAE +A+ +++ EVLFLRQV  F++P        + EDNQGA +IAHN  ++  ++HIDV+HH +R+ VE  +  + +V T  QH D L KA+ + S+  H + +MN
Sbjct:  327 STTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAISKESLGLHRDFVMN 436
[Close]
BLAST of mRNA_H-paniculata_contig16251.3595.1 vs. uniprot
Match: A0A6H5KSZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ5_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.250e-13
Identity = 44/110 (40.00%), Postives = 71/110 (64.55%), Query Frame = 1 
Query:   19 GTPEAE*MAL-EMVNEVLFLRQVEAFIMPALEHYPAIMKEDNQGAKKIAHNKYSSRRARHIDVKHHIVRDSVEAGKFGVVYVGTGEQHVDVLKKALERSSVQKHVNALMN 345
             T EAE +AL ++V E+LFLRQ+  F++P +      + EDNQGA ++A N  S+  ++HIDV+HH +R+ VE  +F V++V +  Q  D L K+L + + + H + +MN
Sbjct:  181 STTEAEYVALGDVVKEILFLRQIWRFMLPQVGIPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVEREEFSVMHVPSPNQRADCLTKSLSKDAFESHRDFVMN 290
[Close]
BLAST of mRNA_H-paniculata_contig16251.3595.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.730e-13
Identity = 46/110 (41.82%), Postives = 68/110 (61.82%), Query Frame = 1 
Query:   19 GTPEAE*MAL-EMVNEVLFLRQVEAFIMPALEHYPAIMKEDNQGAKKIAHNKYSSRRARHIDVKHHIVRDSVEAGKFGVVYVGTGEQHVDVLKKALERSSVQKHVNALMN 345
             T EAE +A+ +++ EVLFLRQV  F++P        + EDNQGA +IAHN  ++  ++HIDV+HH +R+ VE  +  +  V T  QH D L KA+ + S   H + +MN
Sbjct:  210 STTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISKESFALHRDFVMN 319
[Close]
BLAST of mRNA_H-paniculata_contig16251.3595.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 2.010e-13
Identity = 45/110 (40.91%), Postives = 68/110 (61.82%), Query Frame = 1 
Query:   19 GTPEAE*MAL-EMVNEVLFLRQVEAFIMPALEHYPAIMKEDNQGAKKIAHNKYSSRRARHIDVKHHIVRDSVEAGKFGVVYVGTGEQHVDVLKKALERSSVQKHVNALMN 345
             T EAE +A+ +++ EVLFLRQV  F++P        + EDNQGA +I HN  ++  ++HIDV+HH +R+ VE  +  + +V T  QH D L KA+ + S   H + +MN
Sbjct:  265 STTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKESFALHRDFVMN 374
[Close]
BLAST of mRNA_H-paniculata_contig16251.3595.1 vs. uniprot
Match: A0A6H5KIJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIJ7_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 2.280e-13
Identity = 43/110 (39.09%), Postives = 69/110 (62.73%), Query Frame = 1 
Query:   19 GTPEAE*MAL-EMVNEVLFLRQVEAFIMPALEHYPAIMKEDNQGAKKIAHNKYSSRRARHIDVKHHIVRDSVEAGKFGVVYVGTGEQHVDVLKKALERSSVQKHVNALMN 345
             T EAE +AL ++V E++FLRQ+  F++P +      + EDNQGA ++A N  S+  ++HIDV+HH +R+ VE  +  V++V +  Q  D L K+L + S + H   +MN
Sbjct:  116 STTEAEYVALGDVVKEIIFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDSFESHREFVMN 225
[Close]
BLAST of mRNA_H-paniculata_contig16251.3595.1 vs. uniprot
Match: A0A6H5KU04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU04_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 2.300e-13
Identity = 35/71 (49.30%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:  133 EDNQGAKKIAHNKYSSRRARHIDVKHHIVRDSVEAGKFGVVYVGTGEQHVDVLKKALERSSVQKHVNALMN 345
            EDNQGA  +  N +SS R++HIDV+ H +R+  ++G+  V Y+ T EQH D+L KAL R+ ++ H NALMN
Sbjct:   38 EDNQGAISLVQNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKALGRTKLEDHRNALMN 108
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16251.3595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9K6_9PHAE3.540e-1743.86Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JKS3_9PHAE1.260e-1643.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE1.350e-1643.86Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNH6_9PHAE4.140e-1540.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEF2_9PHAE8.290e-1441.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSZ5_9PHAE1.250e-1340.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP70_9PHAE1.730e-1341.82Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4G9_9PHAE2.010e-1340.91Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KIJ7_9PHAE2.280e-1339.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KU04_9PHAE2.300e-1349.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16251contigH-paniculata_contig16251:3329..4322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size994
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16251.3595.1prot_H-paniculata_contig16251.3595.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16251 3368..3682 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929297.5547512-UTR-H-paniculata_contig16251:3328..33671622929297.5547512-UTR-H-paniculata_contig16251:3328..3367Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16251 3329..3367 +
1691480805.4566703-UTR-H-paniculata_contig16251:3328..33671691480805.4566703-UTR-H-paniculata_contig16251:3328..3367Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16251 3329..3367 +
1622929297.5789301-UTR-H-paniculata_contig16251:3682..43221622929297.5789301-UTR-H-paniculata_contig16251:3682..4322Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16251 3683..4322 +
1691480805.472618-UTR-H-paniculata_contig16251:3682..43221691480805.472618-UTR-H-paniculata_contig16251:3682..4322Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16251 3683..4322 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929297.5679636-CDS-H-paniculata_contig16251:3367..36821622929297.5679636-CDS-H-paniculata_contig16251:3367..3682Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16251 3368..3682 +
1691480805.4647453-CDS-H-paniculata_contig16251:3367..36821691480805.4647453-CDS-H-paniculata_contig16251:3367..3682Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16251 3368..3682 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16251.3595.1

>prot_H-paniculata_contig16251.3595.1 ID=prot_H-paniculata_contig16251.3595.1|Name=mRNA_H-paniculata_contig16251.3595.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
MALEMVNEVLFLRQVEAFIMPALEHYPAIMKEDNQGAKKIAHNKYSSRRA
RHIDVKHHIVRDSVEAGKFGVVYVGTGEQHVDVLKKALERSSVQKHVNAL
MNAV*
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mRNA from alignment at H-paniculata_contig16251:3329..4322+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16251.3595.1 ID=mRNA_H-paniculata_contig16251.3595.1|Name=mRNA_H-paniculata_contig16251.3595.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=994bp|location=Sequence derived from alignment at H-paniculata_contig16251:3329..4322+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATGAGGTGACGGCAGCGGGGACACCAGAAGCGGAGTAAATGGCGTTGGA
GATGGTGAACGAAGTACTGTTTCTGCGTCAAGTGGAAGCGTTCATAATGC
CGGCGCTGGAACACTACCCCGCAATAATGAAGGAAGACAATCAAGGGGCC
AAAAAGATCGCCCACAACAAATACAGCAGTCGGAGGGCGCGTCACATCGA
CGTGAAGCACCACATTGTTCGCGATTCGGTTGAAGCTGGGAAGTTTGGCG
TAGTTTATGTGGGGACGGGAGAGCAGCATGTGGACGTACTCAAGAAGGCG
CTAGAGAGGAGTTCTGTTCAGAAGCACGTGAATGCGTTGATGAATGCTGT
GTAATTGCCCGAAAACGCGAGTACGAAGAGAGGGAATTTATTTTTTAACG
CTGCAGTTACGTAGAACACAATAATTTGTTAACTGAAGTCAGATACCGTA
TATAGTAGAAAACTACGCTAGCGAAGTATTGCCCTGTAGAGCAAGTGCGG
GTGTTAGAGTTGTTTGCTCTACTGCAATTGATATTGGTAACAGCATTAGT
ATAAATACAGCATCATGCTTCGATGAATACGTGTAGAACAATAAACGATG
CAGAGAAATTCAGTAAGTTCGCCGGATGCCGTTACATTTTCAGAATTATG
GATAGTCTTCACAAAGACAAAGAAGGAATGATCGACACATCCAAGTCTTT
GCATGTTTGGGAGATGTTGTTACATAGGTTTATAGACCGATGAAGGAGAG
TCCTGCCTAGGCAACTTCCATTTCCAATCGATCAAGCCAAGGTTTCTAGC
CTGTGAGTTCAGTAGACGGAGCACTGCAGCAGTAGAGGTTATTACCAGAG
AGGGCAAGACGAGATTAATACAATAATAAACTAGAAGAAGATCTTGTTTC
CAGAGCAGGCCTAGACTCTGCAAGAGGAGAGTCGAAGGGGGAAGCCCCAT
CAGCTTTCAACAGCAGAGATCATTGAACACAACGGAAAGTCGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig16251:3329..4322+

>mRNA_H-paniculata_contig16251.3595.1 ID=mRNA_H-paniculata_contig16251.3595.1|Name=mRNA_H-paniculata_contig16251.3595.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig16251:3329..4322+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGTTGGAGATGGTGAACGAAGTACTGTTTCTGCGTCAAGTGGAAGC
GTTCATAATGCCGGCGCTGGAACACTACCCCGCAATAATGAAGGAAGACA
ATCAAGGGGCCAAAAAGATCGCCCACAACAAATACAGCAGTCGGAGGGCG
CGTCACATCGACGTGAAGCACCACATTGTTCGCGATTCGGTTGAAGCTGG
GAAGTTTGGCGTAGTTTATGTGGGGACGGGAGAGCAGCATGTGGACGTAC
TCAAGAAGGCGCTAGAGAGGAGTTCTGTTCAGAAGCACGTGAATGCGTTG
ATGAATGCTGTGTAAATGGCGTTGGAGATGGTGAACGAAGTACTGTTTCT
GCGTCAAGTGGAAGCGTTCATAATGCCGGCGCTGGAACACTACCCCGCAA
TAATGAAGGAAGACAATCAAGGGGCCAAAAAGATCGCCCACAACAAATAC
AGCAGTCGGAGGGCGCGTCACATCGACGTGAAGCACCACATTGTTCGCGA
TTCGGTTGAAGCTGGGAAGTTTGGCGTAGTTTATGTGGGGACGGGAGAGC
AGCATGTGGACGTACTCAAGAAGGCGCTAGAGAGGAGTTCTGTTCAGAAG
CACGTGAATGCGTTGATGAATGCTGTGTAA
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