prot_H-paniculata_contig1625.3592.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1625.3592.1
Unique Nameprot_H-paniculata_contig1625.3592.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length434
Homology
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BLAST of mRNA_H-paniculata_contig1625.3592.1 vs. uniprot
Match: D7G1J8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J8_ECTSI)

HSP 1 Score: 298 bits (764), Expect = 1.360e-91
Identity = 152/240 (63.33%), Postives = 182/240 (75.83%), Query Frame = 0 
Query:    3 LLSSFISDLDLVSDWVFLKLVLIDFPSYLQTAGLVFAVFGTIMWALSTTEFAMLSMLRVMWRGSPASRLEHVGLGWQLLANVFLEDFPQFVITVATKPNSIPGALNIVMSTFSLASKIIKGLSSRRAPSLATQFHMIDADPFVTRHLFQLRDEAKKKAGKAEKLVYWTWIYRCSEGEKKAAAVFHVLQLDPTFVNGDLDYMKVDLVLGGRLCITDCGLTGHIPSHVGAMAALRILILRDN 242
            LLSSF+ DLDL++DW FLK  L      ++   L FA+ GT+MWALSTTEF+++S L+ MW+G+P SRL+HVGLGWQLLANVFLED PQF+ITV T+P S+ G LN+  S  SL +KI+ G SS+RAPSL+TQF MID DP VTR+LF+LRDEAKKKA  AEKLVY  W  RCS GE+KAAAVF VLQ+DPTFV GDL+YM+ DL  G RL IT   LTG IPS VG M  LR ++L  N
Sbjct:  168 LLSSFVGDLDLITDWTFLKYGLAGQGFLIRKLALFFAIVGTVMWALSTTEFSLMSKLKNMWKGNPLSRLQHVGLGWQLLANVFLEDVPQFIITVITRPTSVTGVLNLCASGLSLCAKIVHGYSSQRAPSLSTQFKMIDQDPAVTRNLFKLRDEAKKKAKAAEKLVYLAWANRCSTGEQKAAAVFQVLQMDPTFVGGDLEYMRADLFSGSRLYITASSLTGPIPSQVGDMTILRAVVLSGN 407
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BLAST of mRNA_H-paniculata_contig1625.3592.1 vs. uniprot
Match: A0A6H5JNU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNU7_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 1.130e-44
Identity = 92/162 (56.79%), Postives = 115/162 (70.99%), Query Frame = 0 
Query:    3 LLSSFISDLDLVSDWVFLKLVLIDFPSYLQTAG-----------LVFAVFGTIMWALSTTEFAMLSMLRVMWRGSPASRLEHVGLGWQLLANVFLEDFPQFVITVATKPNSIPGALNIVMSTFSLASKIIKGLSSRRAPSLATQFHMIDADPFVTRHLFQLR 153
            LLSSF+ DLDL++DW+FLK  L       +  G           L FA+ GT+MWALSTTEF+++S L+ MW+      L+HVGLGWQLLANVFLED PQF+ITV T+P S+ G LN+  S  SL +KII G+SS+RAPSL+TQF MID DP VTR+LF+LR
Sbjct:  218 LLSSFVGDLDLITDWMFLKYGLAGQGENTKAEGCLQRFLIRKLALFFAIVGTVMWALSTTEFSLMSKLKNMWKV-----LQHVGLGWQLLANVFLEDVPQFIITVITRPTSVTGVLNLCASGLSLCAKIIHGISSQRAPSLSTQFKMIDQDPAVTRNLFKLR 374
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BLAST of mRNA_H-paniculata_contig1625.3592.1 vs. uniprot
Match: A0A6H5JP38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP38_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 4.290e-14
Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 0 
Query:  174 RCSEGEKKAAAVFHVLQLDPTFVNGDLDYMKVDLVLGGRLCITDCGLTGH 223
            RCS GE+KAAAVF VLQ+DPTFV GDL+YM+ DL  G RL IT C LT H
Sbjct:    9 RCSTGEQKAAAVFQVLQMDPTFVGGDLEYMRADLFSGSRLYITSCSLTDH 58
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1625.3592.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G1J8_ECTSI1.360e-9163.33Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JNU7_9PHAE1.130e-4456.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP38_9PHAE4.290e-1470.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00019LEURICHRPTcoord: 258..271
score: 52.82
coord: 279..292
score: 55.15
NoneNo IPR availablePANTHERPTHR45974FAMILY NOT NAMEDcoord: 289..390
coord: 215..339
NoneNo IPR availablePANTHERPTHR45974:SF116LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK1-RELATEDcoord: 289..390
coord: 215..339
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 49..433
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 29..48
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..28
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 212..390
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 279..302
e-value: 6.7
score: 14.7
coord: 327..351
e-value: 29.0
score: 9.5
coord: 255..278
e-value: 56.0
score: 7.1
IPR001611Leucine-rich repeatPFAMPF00560LRR_1coord: 258..279
e-value: 0.27
score: 11.9
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 281..340
e-value: 1.7E-9
score: 37.3
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 233..256
score: 4.57
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 305..328
score: 4.971
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 257..280
score: 6.588
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 281..304
score: 5.64
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 329..352
score: 7.296
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 210..401
e-value: 1.5E-53
score: 184.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1625contigH-paniculata_contig1625:4026..17930 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1625.3592.1mRNA_H-paniculata_contig1625.3592.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1625 2044..24450 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1625.3592.1 ID=prot_H-paniculata_contig1625.3592.1|Name=mRNA_H-paniculata_contig1625.3592.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=434bp
MGLLSSFISDLDLVSDWVFLKLVLIDFPSYLQTAGLVFAVFGTIMWALST
TEFAMLSMLRVMWRGSPASRLEHVGLGWQLLANVFLEDFPQFVITVATKP
NSIPGALNIVMSTFSLASKIIKGLSSRRAPSLATQFHMIDADPFVTRHLF
QLRDEAKKKAGKAEKLVYWTWIYRCSEGEKKAAAVFHVLQLDPTFVNGDL
DYMKVDLVLGGRLCITDCGLTGHIPSHVGAMAALRILILRDNDLNGAIPK
ELSTLSMLKELDLSKNKLEGEIPEDLSSLGSLEILNLSSNKLTGAIPSAL
GGIPVLEQLIVHNNKLSGEIPVELSDLDALRELDLSNNELTGSLPYELSF
LSALEILSVRDNMLSGPIPYELGNLQKLKSFVVADNMFSDAERTDEELKL
KLHPDCETDFLPQRREKHGESEEDIEEEYGYLA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf