mRNA_H-paniculata_contig1625.3592.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1625.3592.1 vs. uniprot
Match: D7G1J8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J8_ECTSI) HSP 1 Score: 331 bits (848), Expect = 1.940e-96 Identity = 167/264 (63.26%), Postives = 202/264 (76.52%), Query Frame = 2
Query: 236 WFLSKEDRDILKRRTVKSRLTPMGLLSSFISDLDLVSDWVFLKLVLIDFPSYLQTAGLVFAVFGTIMWALSTTEFAMLSMLRVMWRGSPASRLEHVGLGWQLLANVFLEDFPQFVITVATKPNSIPGALNIVMSTFSLASKIIKGLSSRRAPSLATQFHMIDADPFVTRHLFQLRDEAKKKAGKAEKLVYWTWIYRCSEGEKKAAAVFHVLQLDPTFVNGDLDYMKVDLVLGGRLCITDCGLTGHIPSHVGAMAALRILILRDN 1027
WFLS +DR +LKRRT+ SR+TP+ LLSSF+ DLDL++DW FLK L ++ L FA+ GT+MWALSTTEF+++S L+ MW+G+P SRL+HVGLGWQLLANVFLED PQF+ITV T+P S+ G LN+ S SL +KI+ G SS+RAPSL+TQF MID DP VTR+LF+LRDEAKKKA AEKLVY W RCS GE+KAAAVF VLQ+DPTFV GDL+YM+ DL G RL IT LTG IPS VG M LR ++L N
Sbjct: 144 WFLSAKDRQVLKRRTILSRITPIVLLSSFVGDLDLITDWTFLKYGLAGQGFLIRKLALFFAIVGTVMWALSTTEFSLMSKLKNMWKGNPLSRLQHVGLGWQLLANVFLEDVPQFIITVITRPTSVTGVLNLCASGLSLCAKIVHGYSSQRAPSLSTQFKMIDQDPAVTRNLFKLRDEAKKKAKAAEKLVYLAWANRCSTGEQKAAAVFQVLQMDPTFVGGDLEYMRADLFSGSRLYITASSLTGPIPSQVGDMTILRAVVLSGN 407
BLAST of mRNA_H-paniculata_contig1625.3592.1 vs. uniprot
Match: A0A6H5JNU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNU7_9PHAE) HSP 1 Score: 200 bits (509), Expect = 6.570e-53 Identity = 111/215 (51.63%), Postives = 144/215 (66.98%), Query Frame = 2
Query: 149 PGGSVSSVGSLNAHTKAFHTTFPRSTRQQWFLSKEDRDILKRRTVKSRLTPMGLLSSFISDLDLVSDWVFLKLVLIDFPSYLQTAG-----------LVFAVFGTIMWALSTTEFAMLSMLRVMWRGSPASRLEHVGLGWQLLANVFLEDFPQFVITVATKPNSIPGALNIVMSTFSLASKIIKGLSSRRAPSLATQFHMIDADPFVTRHLFQLR 760
PG + +G+ A H+ W+LS +DR +LKRRT+ SR+TP+ LLSSF+ DLDL++DW+FLK L + G L FA+ GT+MWALSTTEF+++S L+ MW+ L+HVGLGWQLLANVFLED PQF+ITV T+P S+ G LN+ S SL +KII G+SS+RAPSL+TQF MID DP VTR+LF+LR
Sbjct: 174 PGKTSRGLGASGARGSGGHS---------WYLSAKDRQVLKRRTILSRITPIVLLSSFVGDLDLITDWMFLKYGLAGQGENTKAEGCLQRFLIRKLALFFAIVGTVMWALSTTEFSLMSKLKNMWKV-----LQHVGLGWQLLANVFLEDVPQFIITVITRPTSVTGVLNLCASGLSLCAKIIHGISSQRAPSLSTQFKMIDQDPAVTRNLFKLR 374
BLAST of mRNA_H-paniculata_contig1625.3592.1 vs. uniprot
Match: D7FK13_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK13_ECTSI) HSP 1 Score: 154 bits (388), Expect = 1.410e-35 Identity = 97/258 (37.60%), Postives = 142/258 (55.04%), Query Frame = 2
Query: 245 SKEDRDILKRRTVKSRLTPMGLLSSFISDLDLVSDWVFLKLVLIDFPSYLQTAGLVFAVFGTIMWALSTTEFAMLSMLRVMW--RGSPASRLEHVGLGWQLLANVFLEDFPQFVITVATKPNSIPGALNIVMSTFSLASKIIKGLSSRRAPSLATQFHMIDADPFVTRHLFQLRDEAKKKAGKAEKLVYWTWIYRCSEG--------EKKAAAVFHVLQLDPTFVNGDLDYMKVDLVLGGRLCITDCGLTGHIPSHVG 988
S++ R LKR + ++TP+ +L+S +SDLDL +DW FL+ L D + V V GT+M+ L T EF +S W RG S L+HV LGWQLL NV +ED PQ VIT T P S+ G LNI + F+L +K+ +G ++R +++Q MID DP V +HL R +A++ A A L + ++ A F V+Q+DP F+NG+L Y++ L + RL + GL G +P +G
Sbjct: 118 SEDLRRTLKRSAIWEKVTPLTVLTSVVSDLDLFADWYFLQEGLEDAQELVADVAFVLTVVGTVMYVLLTLEFHPVSEAWT-WCRRGRALSPLQHVPLGWQLLLNVVVEDIPQLVITWVTSPTSVAGVLNIATAGFALLAKMAEGFATRTDLPMSSQLRMIDTDPGVVQHLLNARHKAEELAANAASLAVLVNRFGAENAAMPTERNSKRLLATAFQVMQVDPGFLNGELGYIREKLEVS-RLNLGRFGLKGSLPPSLG 373
BLAST of mRNA_H-paniculata_contig1625.3592.1 vs. uniprot
Match: A0A6H5JP38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP38_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 1.280e-13 Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 2
Query: 821 RCSEGEKKAAAVFHVLQLDPTFVNGDLDYMKVDLVLGGRLCITDCGLTGH 970
RCS GE+KAAAVF VLQ+DPTFV GDL+YM+ DL G RL IT C LT H
Sbjct: 9 RCSTGEQKAAAVFQVLQMDPTFVGGDLEYMRADLFSGSRLYITSCSLTDH 58 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1625.3592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1625.3592.1 >prot_H-paniculata_contig1625.3592.1 ID=prot_H-paniculata_contig1625.3592.1|Name=mRNA_H-paniculata_contig1625.3592.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=434bp MGLLSSFISDLDLVSDWVFLKLVLIDFPSYLQTAGLVFAVFGTIMWALSTback to top mRNA from alignment at H-paniculata_contig1625:2044..24450- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1625.3592.1 ID=mRNA_H-paniculata_contig1625.3592.1|Name=mRNA_H-paniculata_contig1625.3592.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=22407bp|location=Sequence derived from alignment at H-paniculata_contig1625:2044..24450- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1625:2044..24450- >mRNA_H-paniculata_contig1625.3592.1 ID=mRNA_H-paniculata_contig1625.3592.1|Name=mRNA_H-paniculata_contig1625.3592.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2604bp|location=Sequence derived from alignment at H-paniculata_contig1625:2044..24450- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |