mRNA_H-paniculata_contig10545.359.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10545.359.1
Unique NamemRNA_H-paniculata_contig10545.359.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10545.359.1 vs. uniprot
Match: A0A7S4EUJ4_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EUJ4_CHRCT)

HSP 1 Score: 84.3 bits (207), Expect = 3.690e-16
Identity = 59/79 (74.68%), Postives = 67/79 (84.81%), Query Frame = 1 
Query:  310 KVCCCLGQIAKHSVDLAEVVVEAEVFPNILKCLRDSDLYVRKNAATXXXXXXXXXXXXXXXXVNSGGAAALVDYVADAQ 546
            +VC CL QI KHSVDLAEVVVEAE+FP IL  L+D D+YVRKNAATXXXXXXXXXXXXXXXX  +GG  A+VDYV +A+
Sbjct:   40 QVCSCLAQITKHSVDLAEVVVEAEIFPQILNLLKDVDVYVRKNAATXXXXXXXXXXXXXXXXXXAGGVGAMVDYVTEAR 118
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BLAST of mRNA_H-paniculata_contig10545.359.1 vs. uniprot
Match: A0A816HSC3_ADIRI (Hypothetical protein (Fragment) n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A816HSC3_ADIRI)

HSP 1 Score: 70.1 bits (170), Expect = 5.850e-12
Identity = 33/44 (75.00%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    1 LAQNVLDAGTVPLLVLCLQEPEITLKRISASAMSDLCKHTPELA 132
            L+Q+V+DAG VPLLVLCLQEPEI LKR++ASA+SD+ KH+PELA
Sbjct:    1 LSQHVVDAGGVPLLVLCLQEPEIALKRVAASALSDIAKHSPELA 44
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BLAST of mRNA_H-paniculata_contig10545.359.1 vs. uniprot
Match: A0A822IH83_9NEOB ((mimic poison frog) hypothetical protein (Fragment) n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A822IH83_9NEOB)

HSP 1 Score: 68.2 bits (165), Expect = 8.980e-12
Identity = 32/43 (74.42%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    4 AQNVLDAGTVPLLVLCLQEPEITLKRISASAMSDLCKHTPELA 132
            +Q V+DAG VPLLVLC+QEPE+ LKRI+ASA+SDL KH+PELA
Sbjct:    1 SQAVVDAGAVPLLVLCIQEPEVALKRIAASALSDLSKHSPELA 43
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BLAST of mRNA_H-paniculata_contig10545.359.1 vs. uniprot
Match: A0A7S2S9D5_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S9D5_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.610e-11
Identity = 57/93 (61.29%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:  268 VLSQTIAWIKRNNGKVCCCLGQIAKHSVDLAEVVVEAEVFPNILKCLRDSDLYVRKNAATXXXXXXXXXXXXXXXXVNSGGAAALVDYVADAQ 546
            ++S   A +KR   + C CL Q AKH V LAE+VVEAE+FPNIL CL+D D         XXXXXXXXXXXXXXXX N+GGAAALVDYVA+++
Sbjct:    5 LISHNDAKLKR---QACGCLAQGAKHCVALAEMVVEAEIFPNILTCLQDDDXXXXXXXXXXXXXXXXXXXXXXXXXXNAGGAAALVDYVANSK 94
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BLAST of mRNA_H-paniculata_contig10545.359.1 vs. uniprot
Match: A9TWA6_PHYPA (PF16 central pair apparatus protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9TWA6_PHYPA)

HSP 1 Score: 68.9 bits (167), Expect = 1.780e-10
Identity = 62/114 (54.39%), Postives = 72/114 (63.16%), Query Frame = 1 
Query:  241 LHAR--------TRIHTVLSQTIA--------WIKRNNGKVCCCLGQIAKHSVDLAEVVVEAEVFPNILKCLRDSDLYVRKNAATXXXXXXXXXXXXXXXXVNSGGAAALVDYV 534
            LHAR        TR+H++L   I         ++      VC  L QIAKH+VDLAEVVV A+VFP I   LRD+D  VR+NAA  XXXXXXXXXXXXXXX  +GG AALVD V
Sbjct:   31 LHARESGVVLLPTRVHSLLVWNIPCSFLNYVLFLTSIGNNVCALLSQIAKHTVDLAEVVVAADVFPKIYLLLRDTDPMVRRNAAMVXXXXXXXXXXXXXXXXXTGGVAALVDNV 144
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BLAST of mRNA_H-paniculata_contig10545.359.1 vs. uniprot
Match: A0A7K4TDR8_9CHAR (SPAG6 protein (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A7K4TDR8_9CHAR)

HSP 1 Score: 67.8 bits (164), Expect = 2.340e-10
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:  310 KVCCCLGQIAKHSVDLAEVVVEAEVFPNILKCLRDSDLYVRKNAAT 447
            +V   L QIAKHSVDLAE+VVEAE+FP +L CL+DSD YV+KN AT
Sbjct:    2 QVLSALSQIAKHSVDLAELVVEAEIFPVVLTCLKDSDEYVKKNGAT 47
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BLAST of mRNA_H-paniculata_contig10545.359.1 vs. uniprot
Match: A0A817NL57_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817NL57_9BILA)

HSP 1 Score: 68.2 bits (165), Expect = 3.110e-10
Identity = 31/42 (73.81%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    1 LAQNVLDAGTVPLLVLCLQEPEITLKRISASAMSDLCKHTPE 126
            L+Q+V+DAG+VPLLVLCLQEPEI LKR++ASA+SD+ KH+PE
Sbjct:    8 LSQHVVDAGSVPLLVLCLQEPEIALKRVAASALSDIAKHSPE 49
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BLAST of mRNA_H-paniculata_contig10545.359.1 vs. uniprot
Match: UPI000510BB3B (sperm-associated antigen 6 n=1 Tax=Pelecanus crispus TaxID=36300 RepID=UPI000510BB3B)

HSP 1 Score: 67.4 bits (163), Expect = 5.640e-10
Identity = 32/44 (72.73%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    1 LAQNVLDAGTVPLLVLCLQEPEITLKRISASAMSDLCKHTPELA 132
            L+Q V+DAG VPLLVLC+QEPEI LKRI+AS +SD+ KH+PELA
Sbjct:    1 LSQAVVDAGAVPLLVLCIQEPEIALKRIAASTLSDISKHSPELA 44
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BLAST of mRNA_H-paniculata_contig10545.359.1 vs. uniprot
Match: A0A482RHT0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RHT0_9ARCH)

HSP 1 Score: 67.0 bits (162), Expect = 5.920e-10
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:  310 KVCCCLGQIAKHSVDLAEVVVEAEVFPNILKCLRDSDLYVR 432
            +VC CL QIAKHSVDLAEVVVEAE+FP IL CL+D D+ VR
Sbjct:   23 QVCSCLAQIAKHSVDLAEVVVEAEIFPRILTCLKDLDVNVR 63
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BLAST of mRNA_H-paniculata_contig10545.359.1 vs. uniprot
Match: A0A850ZPJ6_9PASS (SPAG6 protein (Fragment) n=1 Tax=Tichodroma muraria TaxID=237442 RepID=A0A850ZPJ6_9PASS)

HSP 1 Score: 65.9 bits (159), Expect = 1.150e-9
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:  310 KVCCCLGQIAKHSVDLAEVVVEAEVFPNILKCLRDSDLYVRKNAAT 447
            +V   L QIAKHSVDLAE+VVEAE+FP +L CL+D D YV+KN AT
Sbjct:    2 QVLSALSQIAKHSVDLAELVVEAEIFPVVLTCLKDXDEYVKKNGAT 47
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10545.359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4EUJ4_CHRCT3.690e-1674.68Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A816HSC3_ADIRI5.850e-1275.00Hypothetical protein (Fragment) n=1 Tax=Adineta ri... [more]
A0A822IH83_9NEOB8.980e-1274.42(mimic poison frog) hypothetical protein (Fragment... [more]
A0A7S2S9D5_9STRA1.610e-1161.29Hypothetical protein (Fragment) n=1 Tax=labyrinthu... [more]
A9TWA6_PHYPA1.780e-1054.39PF16 central pair apparatus protein n=1 Tax=Physco... [more]
A0A7K4TDR8_9CHAR2.340e-1069.57SPAG6 protein (Fragment) n=2 Tax=Neognathae TaxID=... [more]
A0A817NL57_9BILA3.110e-1073.81Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]
UPI000510BB3B5.640e-1072.73sperm-associated antigen 6 n=1 Tax=Pelecanus crisp... [more]
A0A482RHT0_9ARCH5.920e-1075.61Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A850ZPJ6_9PASS1.150e-967.39SPAG6 protein (Fragment) n=1 Tax=Tichodroma murari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10545contigH-paniculata_contig10545:2460..4228 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score77.0
Seed ortholog evalue1e-11
Seed eggNOG ortholog10181.XP_004921329.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Sperm-associated antigen
EggNOG OGs35C1R@314146,38BV1@33154,3BC5X@33208,3CT8V@33213,3J263@40674,48B7W@7711,4947E@7742,4PWNC@9989,COG5064@1,KOG0166@2759
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-04_003710.1
COG Functional cat.U
Best tax levelRodentia
Best eggNOG OGNA|NA|NA
Exons3
Model size546
Cds size546
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10545.359.1prot_H-paniculata_contig10545.359.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10545 2460..4228 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928757.8118575-CDS-H-paniculata_contig10545:2459..25251622928757.8118575-CDS-H-paniculata_contig10545:2459..2525Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10545 2460..2525 -
1691480608.055907-CDS-H-paniculata_contig10545:2459..25251691480608.055907-CDS-H-paniculata_contig10545:2459..2525Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10545 2460..2525 -
1622928757.8292553-CDS-H-paniculata_contig10545:3313..35831622928757.8292553-CDS-H-paniculata_contig10545:3313..3583Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10545 3314..3583 -
1691480608.0676148-CDS-H-paniculata_contig10545:3313..35831691480608.0676148-CDS-H-paniculata_contig10545:3313..3583Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10545 3314..3583 -
1622928757.8539557-CDS-H-paniculata_contig10545:4018..42281622928757.8539557-CDS-H-paniculata_contig10545:4018..4228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10545 4019..4228 -
1691480608.0758646-CDS-H-paniculata_contig10545:4018..42281691480608.0758646-CDS-H-paniculata_contig10545:4018..4228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10545 4019..4228 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10545.359.1

>prot_H-paniculata_contig10545.359.1 ID=prot_H-paniculata_contig10545.359.1|Name=mRNA_H-paniculata_contig10545.359.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=182bp
LAQNVLDAGTVPLLVLCLQEPEITLKRISASAMSDLCKHTPELAQAVVDA
GAVAYLSPLIMHPDSKLKRQTYIGFYTLPSLHARTRIHTVLSQTIAWIKR
NNGKVCCCLGQIAKHSVDLAEVVVEAEVFPNILKCLRDSDLYVRKNAATC
IREIAKHTPELAKLIVNSGGAAALVDYVADAQ
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mRNA from alignment at H-paniculata_contig10545:2460..4228-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10545.359.1 ID=mRNA_H-paniculata_contig10545.359.1|Name=mRNA_H-paniculata_contig10545.359.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1769bp|location=Sequence derived from alignment at H-paniculata_contig10545:2460..4228- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGCGCAGAATGTGCTAGATGCTGGAACGGTACCTCTTCTGGTGTTGTG
CCTCCAAGAACCCGAAATAACCCTCAAGCGCATCTCGGCGTCCGCCATGA
GTGACTTGTGCAAGCACACGCCGGAATTGGCACAGGCCGTGGTCGACGCG
GGGGCCGTAGCTTACCTATCCCCGCTCATCATGCACCCCGACTCTAAGCT
GAAGCGGCAGGTAGGAAAACGAAGAAAGGAGCACTGCAGTCGCTCAACCG
TGCCGGAGTAGTAAACATGCCTCTTCGGTACTATTGATGTTCCCAAGGCG
TTCACAAAAGGCGGGACAAATAGCTAGAAATAAAGATCCCGATGGCAGTA
GCAGTTATGCGTCCGTTTATCTGCTTTGCCTACGAAACGCCGGGTAGGGA
TGTGAGGGAATCCATCGTTTGTTACATCACTTCACTCACCACGAACGTAA
ACACGACACGCCATATAGCTAACGTTCTCCGTGTGGATATACATACATTA
TGTCGATTTTACAGCCTGTTTTGTGCAGCAGCGAGAACGCCAGCGACTAG
CATCCTCGATCGTCATGTAAAAATGTGTCATGGGCATCTTGACTAGATTT
TTGCTATTTCTTCTCCTGAACCCTCTTATCTCCGCACGCCGGGAGACCTA
CATCGGTTTCTACACCCTTCCTTCGCTGCATGCGCGCACCCGCATCCACA
CGGTCTTGTCCCAAACAATCGCCTGGATCAAACGAAACAACGGAAAGGTA
TGCTGCTGCCTGGGGCAGATCGCGAAGCACTCGGTTGACCTGGCGGAGGT
AGTGGTTGAAGCCGAGGTGTTCCCCAACATTTTGAAGTGCCTCAGGGACT
CGGATCTGTACGTGCGTAAAAACGCCGCTACTTGCATCCGAGAGATTGCC
AAGCACACGCCTGAGGTATTTCGACATTTCTTTTTTGTGTGAATCCGTAT
GTTTGGAGCTGATCGACTAATCGAAGAACTTTGGTATGAAGCTGGAGGAC
GGCGAGTGTTCCAATGATATGAATTAGTTAGCACGGTATATGCTCCTAGG
TCTAGAAACGTTCTTCGCATCCCACGGCCATTTCCTACCCGTGCGCGTAT
CCCTGTTCTACAAAATGTTGTATTGACTTCGTGCCTCGATACAATCGAGT
CATCCTACGGCAGGGGGAAGGGTCACTTGTTTAACGAAGCTTGCTTCGCG
AAAGGGGCGCAAAACTAACGCAAATCAAAGCCGTTCCCATTGAATGTGTT
TGTGCATAAAGGTGCACAGTCCGCAAGTCGAAATGGAATTTCTGTTCAAG
GGGGAGCAAAAACATCCAAAATTTAAATATATATATATATGCTTGATCCA
TTTCTTAAAGTCGCAACAATTGTTTTTTCCATATGTTAAGTGCGGCAAAA
CCGCTTCAATTCCTCCCATTCCAGTAGGGTGATCTCGATACAAACCCTCT
ACAATACAGTAGATACCCGAGGCATTGTTATACAAACGGACGTACATCAT
GCGAACACACATGAACACCAATGTATTGTGGCACGGACGTCATTTTTCCG
TTTAGCTGATCATAGCCACTTTTCAATCCTAGCACCCCATGCCTAAAAGA
TTTGGAAAAGCCTTGACCGATCACCCTCTTTATCCGATATCTGATACCGT
TCCCCTCCCATCCCAAAACAACAAACAACAACGAAAAATGCCTTAACGAC
CAGCTTGCCAAGCTGATCGTGAACTCCGGTGGAGCCGCTGCACTGGTGGA
TTACGTGGCGGATGCACAG
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Coding sequence (CDS) from alignment at H-paniculata_contig10545:2460..4228-

>mRNA_H-paniculata_contig10545.359.1 ID=mRNA_H-paniculata_contig10545.359.1|Name=mRNA_H-paniculata_contig10545.359.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1092bp|location=Sequence derived from alignment at H-paniculata_contig10545:2460..4228- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGCGCAGAATGTGCTAGATGCTGGAACGGTACCTCTTCTGGTGTTGTG
CCTCCAAGAACCCGAAATAACCCTCAAGCGCATCTCGGCGTCCGCCATGA
GTGACTTGTGCAAGCACACGCCGGAATTGGCACAGGCCGTGGTCGACGCG
GGGGCCGTAGCTTACCTATCCCCGCTCATCATGCACCCCGACTCTAAGCT
GAAGCGGCAGCTCGCGCAGAATGTGCTAGATGCTGGAACGGTACCTCTTC
TGGTGTTGTGCCTCCAAGAACCCGAAATAACCCTCAAGCGCATCTCGGCG
TCCGCCATGAGTGACTTGTGCAAGCACACGCCGGAATTGGCACAGGCCGT
GGTCGACGCGGGGGCCGTAGCTTACCTATCCCCGCTCATCATGCACCCCG
ACTCTAAGCTGAAGCGGCAGACCTACATCGGTTTCTACACCCTTCCTTCG
CTGCATGCGCGCACCCGCATCCACACGGTCTTGTCCCAAACAATCGCCTG
GATCAAACGAAACAACGGAAAGGTATGCTGCTGCCTGGGGCAGATCGCGA
AGCACTCGGTTGACCTGGCGGAGGTAGTGGTTGAAGCCGAGGTGTTCCCC
AACATTTTGAAGTGCCTCAGGGACTCGGATCTGTACGTGCGTAAAAACGC
CGCTACTTGCATCCGAGAGATTGCCAAGCACACGCCTGAGACCTACATCG
GTTTCTACACCCTTCCTTCGCTGCATGCGCGCACCCGCATCCACACGGTC
TTGTCCCAAACAATCGCCTGGATCAAACGAAACAACGGAAAGGTATGCTG
CTGCCTGGGGCAGATCGCGAAGCACTCGGTTGACCTGGCGGAGGTAGTGG
TTGAAGCCGAGGTGTTCCCCAACATTTTGAAGTGCCTCAGGGACTCGGAT
CTGTACGTGCGTAAAAACGCCGCTACTTGCATCCGAGAGATTGCCAAGCA
CACGCCTGAGCTTGCCAAGCTGATCGTGAACTCCGGTGGAGCCGCTGCAC
TGGTGGATTACGTGGCGGATGCACAGCTTGCCAAGCTGATCGTGAACTCC
GGTGGAGCCGCTGCACTGGTGGATTACGTGGCGGATGCACAG
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