mRNA_H-paniculata_contig162.3570.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig162.3570.1
Unique NamemRNA_H-paniculata_contig162.3570.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig162.3570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig162contigH-paniculata_contig162:7727..8642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size916
Cds size915
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929294.9144063-CDS-H-paniculata_contig162:7726..86411622929294.9144063-CDS-H-paniculata_contig162:7726..8641Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig162 7727..8641 +
1691480804.1651437-CDS-H-paniculata_contig162:7726..86411691480804.1651437-CDS-H-paniculata_contig162:7726..8641Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig162 7727..8641 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig162.3570.1prot_H-paniculata_contig162.3570.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig162 7727..8641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig162.3570.1

>prot_H-paniculata_contig162.3570.1 ID=prot_H-paniculata_contig162.3570.1|Name=mRNA_H-paniculata_contig162.3570.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=305bp
GAGRRGASGFPSAASEVVANSVMRTQRAFEKNKNPSKSATGNVSPVGDKK
DGGGGGGGDGKGEQHQQEVNTKDVLGGVVPTQRISERSITKGRSVAAAAA
AAAAAATPELVPEGGDQSHYKNKHKDNMEEQAAAPPAATAAAADDGFVLK
KDNVIKPGSKDNTEDTQDLLLDRADVAAILAERNDRLSSQRSAQGLDGSH
CRRDADTNGTTITAPSVDTTSTDNDQQEADGGGGGSHFGSDNSHADQVGV
GGAPPPASPAYREYDAKTSSPKGVVCPVVEETTPTTAAAGALAVTSATPV
TAESG
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mRNA from alignment at H-paniculata_contig162:7727..8642+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig162.3570.1 ID=mRNA_H-paniculata_contig162.3570.1|Name=mRNA_H-paniculata_contig162.3570.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=916bp|location=Sequence derived from alignment at H-paniculata_contig162:7727..8642+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCGGGTCGGAGGGGAGCATCGGGATTCCCATCGGCGGCGTCGGAAGT
TGTCGCAAACAGTGTTATGCGGACGCAGCGGGCGTTCGAGAAAAACAAAA
ATCCTTCGAAGTCAGCGACGGGTAATGTGTCGCCAGTGGGGGACAAGAAA
GACGGAGGAGGAGGAGGAGGAGGTGACGGAAAGGGAGAACAGCACCAGCA
GGAGGTAAACACGAAAGACGTCCTCGGCGGTGTCGTGCCGACACAGCGGA
TTTCCGAGAGGAGCATTACAAAGGGAAGATCCGTTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTACCCCAGAGTTGGTGCCTGAAGGCGGCGACCA
AAGTCACTACAAGAACAAACACAAAGACAACATGGAAGAACAAGCCGCTG
CCCCACCCGCCGCCACCGCCGCCGCCGCCGACGACGGTTTTGTTCTCAAG
AAGGACAATGTGATCAAGCCAGGGAGCAAGGACAACACGGAAGACACACA
GGATCTCCTGCTAGATAGAGCCGATGTGGCCGCAATTCTGGCCGAACGAA
ACGATCGATTGAGCTCTCAAAGGTCCGCCCAAGGCCTCGACGGTTCCCAC
TGCCGCCGCGATGCCGACACCAACGGAACTACCATTACAGCGCCCAGCGT
TGACACAACTTCCACGGATAATGACCAGCAAGAGGCCGATGGCGGTGGCG
GTGGCAGTCATTTTGGCAGCGACAATTCTCACGCTGATCAAGTTGGAGTG
GGTGGAGCTCCCCCGCCCGCCAGCCCTGCCTACCGCGAATACGATGCAAA
GACGAGCAGTCCCAAAGGCGTTGTGTGTCCTGTGGTCGAGGAAACGACGC
CGACTACCGCCGCCGCCGGAGCTTTGGCAGTAACGTCGGCAACACCGGTG
ACCGCGGAGAGTGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig162:7727..8642+

>mRNA_H-paniculata_contig162.3570.1 ID=mRNA_H-paniculata_contig162.3570.1|Name=mRNA_H-paniculata_contig162.3570.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1830bp|location=Sequence derived from alignment at H-paniculata_contig162:7727..8642+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCGGGTCGGAGGGGAGCATCGGGATTCCCATCGGCGGCGTCGGAAGT
TGTCGCAAACAGTGTTATGCGGACGCAGCGGGCGTTCGAGAAAAACAAAA
ATCCTTCGAAGTCAGCGACGGGTAATGTGTCGCCAGTGGGGGACAAGAAA
GACGGAGGAGGAGGAGGAGGAGGTGACGGAAAGGGAGAACAGCACCAGCA
GGAGGTAAACACGAAAGACGTCCTCGGCGGTGTCGTGCCGACACAGCGGA
TTTCCGAGAGGAGCATTACAAAGGGAAGATCCGTTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTACCCCAGAGTTGGTGCCTGAAGGCGGCGACCA
AAGTCACTACAAGAACAAACACAAAGACAACATGGAAGAACAAGCCGCTG
CCCCACCCGCCGCCACCGCCGCCGCCGCCGACGACGGTTTTGTTCTCAAG
AAGGACAATGTGATCAAGCCAGGGAGCAAGGACAACACGGAAGACACACA
GGATCTCCTGCTAGATAGAGCCGATGTGGCCGCAATTCTGGCCGAACGAA
ACGATCGATTGAGCTCTCAAAGGTCCGCCCAAGGCCTCGACGGTTCCCAC
TGCCGCCGCGATGCCGACACCAACGGAACTACCATTACAGCGCCCAGCGT
TGACACAACTTCCACGGATAATGACCAGCAAGAGGCCGATGGCGGTGGCG
GTGGCAGTCATTTTGGCAGCGACAATTCTCACGCTGATCAAGTTGGAGTG
GGTGGAGCTCCCCCGCCCGCCAGCCCTGCCTACCGCGAATACGATGCAAA
GACGAGCAGTCCCAAAGGCGTTGTGTGTCCTGTGGTCGAGGAAACGACGC
CGACTACCGCCGCCGCCGGAGCTTTGGCAGTAACGTCGGCAACACCGGTG
ACCGCGGAGAGTGGGGGGGCGGGTCGGAGGGGAGCATCGGGATTCCCATC
GGCGGCGTCGGAAGTTGTCGCAAACAGTGTTATGCGGACGCAGCGGGCGT
TCGAGAAAAACAAAAATCCTTCGAAGTCAGCGACGGGTAATGTGTCGCCA
GTGGGGGACAAGAAAGACGGAGGAGGAGGAGGAGGAGGTGACGGAAAGGG
AGAACAGCACCAGCAGGAGGTAAACACGAAAGACGTCCTCGGCGGTGTCG
TGCCGACACAGCGGATTTCCGAGAGGAGCATTACAAAGGGAAGATCCGTT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTACCCCAGAGTTGGTGCC
TGAAGGCGGCGACCAAAGTCACTACAAGAACAAACACAAAGACAACATGG
AAGAACAAGCCGCTGCCCCACCCGCCGCCACCGCCGCCGCCGCCGACGAC
GGTTTTGTTCTCAAGAAGGACAATGTGATCAAGCCAGGGAGCAAGGACAA
CACGGAAGACACACAGGATCTCCTGCTAGATAGAGCCGATGTGGCCGCAA
TTCTGGCCGAACGAAACGATCGATTGAGCTCTCAAAGGTCCGCCCAAGGC
CTCGACGGTTCCCACTGCCGCCGCGATGCCGACACCAACGGAACTACCAT
TACAGCGCCCAGCGTTGACACAACTTCCACGGATAATGACCAGCAAGAGG
CCGATGGCGGTGGCGGTGGCAGTCATTTTGGCAGCGACAATTCTCACGCT
GATCAAGTTGGAGTGGGTGGAGCTCCCCCGCCCGCCAGCCCTGCCTACCG
CGAATACGATGCAAAGACGAGCAGTCCCAAAGGCGTTGTGTGTCCTGTGG
TCGAGGAAACGACGCCGACTACCGCCGCCGCCGGAGCTTTGGCAGTAACG
TCGGCAACACCGGTGACCGCGGAGAGTGGG
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