mRNA_H-paniculata_contig162.3571.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig162.3571.1 vs. uniprot
Match: D7G0R0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R0_ECTSI) HSP 1 Score: 147 bits (371), Expect = 1.190e-32 Identity = 267/453 (58.94%), Postives = 301/453 (66.45%), Query Frame = 1
Query: 118 VEKKLTGAASGGPKTAIGYLLGDLRMKPGEVKEAVIRCPALLKLTDRGPHGVASWLQGGLGLSADDVAKMFRRHPSMLTYSIVHNLRPKFRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAQASSDIVRRAIFRQXXXXXXXXXXXXXXXXXXXQDRLGMSEKAAWTLIGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDFFEHEMGNVEPEQLLSCLEARPSALSASLGKRLTVRIAKMRSGGVEPALQEHLRAVTSLTDAQFKAWL 1476
+++++TG ++GGP+TA+GYLLG+LRM+P EVK+AV+R PAL+ L+ RGPH VASWLQGGLGLSADDV KM R+HP+++ SIVHNLRPK RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXX ++ ASS +VRR +FRQ XXXXXXXXXQDRLGMSE AAW IGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX IDFF+ MG VEP L+ LE +PS L+ASLGKRL R ++MR G+EP RA+ LT+ QF+AW+
Sbjct: 318 MKERMTGRSAGGPQTAVGYLLGELRMRPEEVKDAVLRWPALMSLSKRGPHAVASWLQGGLGLSADDVGKMIRKHPAIVACSIVHNLRPKLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPTFFTLSSXXXXXXXXXXL------------------TSHASSKVVRRVLFRQPSLLGHNADGXXXXXXXXXQDRLGMSEAAAWKFIGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLCIEDNLAPT----------------------------------------------------------------IDFFQFGMGEVEPSDLMDGLEMKPSVLAASLGKRLIPRASRMRRAGIEPNFLRDYRAIAQLTEPQFRAWM 688
BLAST of mRNA_H-paniculata_contig162.3571.1 vs. uniprot
Match: A0A6H5JAG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAG1_9PHAE) HSP 1 Score: 132 bits (331), Expect = 2.760e-29 Identity = 59/91 (64.84%), Postives = 78/91 (85.71%), Query Frame = 1
Query: 118 VEKKLTGAASGGPKTAIGYLLGDLRMKPGEVKEAVIRCPALLKLTDRGPHGVASWLQGGLGLSADDVAKMFRRHPSMLTYSIVHNLRPKFR 390
++++LTG ++GGP+TA+GYLLG+LRM+P EVK+AV+R PAL+ L+ RGPH V SWLQGGLGLS DDV KM R++P+++ SIVHNLRPK R
Sbjct: 312 MKERLTGRSAGGPQTAVGYLLGELRMRPEEVKDAVLRWPALMSLSKRGPHAVTSWLQGGLGLSTDDVGKMIRKNPAIVACSIVHNLRPKLR 402 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig162.3571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig162.3571.1 >prot_H-paniculata_contig162.3571.1 ID=prot_H-paniculata_contig162.3571.1|Name=mRNA_H-paniculata_contig162.3571.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=566bp MSLKKRLGMSDAEVEALRGWAHRSGLANDRAVEKKLTGAASGGPKTAIGYback to top mRNA from alignment at H-paniculata_contig162:8660..35215+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig162.3571.1 ID=mRNA_H-paniculata_contig162.3571.1|Name=mRNA_H-paniculata_contig162.3571.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=26556bp|location=Sequence derived from alignment at H-paniculata_contig162:8660..35215+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig162:8660..35215+ >mRNA_H-paniculata_contig162.3571.1 ID=mRNA_H-paniculata_contig162.3571.1|Name=mRNA_H-paniculata_contig162.3571.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3396bp|location=Sequence derived from alignment at H-paniculata_contig162:8660..35215+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |