prot_H-paniculata_contig16190.3566.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig16190.3566.1
Unique Nameprot_H-paniculata_contig16190.3566.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length159
Homology
BLAST of mRNA_H-paniculata_contig16190.3566.1 vs. uniprot
Match: D7G6X7_ECTSI (Chloroplast 50S ribosomal protein 17 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6X7_ECTSI)

HSP 1 Score: 212 bits (539), Expect = 5.580e-68
Identity = 106/140 (75.71%), Postives = 120/140 (85.71%), Query Frame = 0
Query:    1 MKKRVNMNRLGRGFSHRWAMMRNMVTSFIYHERIRTTLPRAKELRKVAEKMVTHSKNGTEHHRRQAAAVVRENGALVKLFEVFGPRYKDRPGGYTRILKLHAPRKGDKADMAVIEFVDRPGELRPAKPAKGTQGLRDLFE 140
            M+KRVNM+RLGR  SHR AM+RNMVTSFIYHERIRTT+PRAKELRKVA+ MVT +K GT HH+RQA  VVREN A+VKLFEV GPRYKDRPGGYTR++KL  PRKGD+ADMA+IEFVDR GELRPA+    T+GL DL E
Sbjct:    1 MRKRVNMHRLGRDMSHRLAMLRNMVTSFIYHERIRTTVPRAKELRKVADNMVTLAKKGTPHHQRQAQGVVRENAAVVKLFEVLGPRYKDRPGGYTRVMKLQKPRKGDQADMAIIEFVDREGELRPARQVGQTRGLVDLVE 140          
BLAST of mRNA_H-paniculata_contig16190.3566.1 vs. uniprot
Match: A0A7S3QJX6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJX6_9STRA)

HSP 1 Score: 182 bits (462), Expect = 2.890e-56
Identity = 93/149 (62.42%), Postives = 113/149 (75.84%), Query Frame = 0
Query:    1 MKKRVNMNRLGRGFSHRWAMMRNMVTSFIYHERIRTTLPRAKELRKVAEKMVTHSKNGTEHHRRQAAAVVRENGALVKLFEVFGPRYKDRPGGYTRILKLHAPRKGDKADMAVIEFVDRPGELRPAKPAKGTQGLRDLFEGEDEILQQV 149
            MKKR+   +LGR  SHRWAM+RNMVTS IYHERI TT+P+AKE+R +AEK++ H+KNG+ H RR A  VVRE  A+ KLFEV GPRY+DR GGYTR+LKL  PR+GD A MAV+E+VDRPGE+R A+P KG   L D     DE L+ V
Sbjct:    1 MKKRIAFRKLGRTASHRWAMLRNMVTSLIYHERIVTTVPKAKEVRHLAEKIIKHAKNGSLHSRRLADKVVREEPAVTKLFEVLGPRYQDREGGYTRVLKLSKPRQGDNAPMAVLEYVDRPGEIRAARPPKGRFDLLDTL---DEALENV 146          
BLAST of mRNA_H-paniculata_contig16190.3566.1 vs. uniprot
Match: A0A7S0ASE6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ASE6_9STRA)

HSP 1 Score: 171 bits (434), Expect = 3.890e-51
Identity = 89/153 (58.17%), Postives = 111/153 (72.55%), Query Frame = 0
Query:    1 MKKRVNMNRLGRGFSHRWAMMRNMVTSFIYHERIRTTLPRAKELRKVAEKMVTHSKNGTEHHRRQAAAVVRENGALVKLFEVFGPRYKDRPGGYTRILKLHAPRKGDKADMAVIEFVDRPGELRPAKPAK------------GTQGLRDLFEG 141
            MKKR+   +LGR  +H+WAM+RNMVTS I HERI TTLP+AKELRK+A+KMV   K+G+ H RRQA AV+RE   L KLFE+ GPRY++R GGYTR+LKL  PR+GD AD+AVIE+VDRPGE+R A+P +            G   LR+  EG
Sbjct:   39 MKKRLAFRKLGRQPAHKWAMLRNMVTSLIKHERIVTTLPKAKELRKLADKMVGLGKSGSLHSRRQAGAVIRERPVLTKLFEILGPRYEEREGGYTRVLKLSRPREGDNADLAVIEYVDRPGEVRAARPPRARRERLLATTTHGGAALREALEG 191          
BLAST of mRNA_H-paniculata_contig16190.3566.1 vs. uniprot
Match: A0A835Z8L6_9STRA (Chloroplast 50S ribosomal protein 17 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8L6_9STRA)

HSP 1 Score: 165 bits (417), Expect = 1.930e-49
Identity = 79/122 (64.75%), Postives = 102/122 (83.61%), Query Frame = 0
Query:    7 MNRLGRGFSHRWAMMRNMVTSFIYHERIRTTLPRAKELRKVAEKMVTHSKNGTEHHRRQAAAVVRENGALVKLFEVFGPRYKDRPGGYTRILKLHAPRKGDKADMAVIEFVDRPGELRPAKP 128
            ++R+GRG +HR AM++NMVTS I HERI+TT+P+AK L+ +A++MVTH+K GT H RR A + +++ GAL KLF+V GPRY++RPGGYTRILKL  PR GDKADM +IEFVDR GELRPA+P
Sbjct:   10 LSRMGRGTAHRIAMLKNMVTSLITHERIKTTVPKAKNLKVLADQMVTHAKTGTLHSRRLAQSTIQDKGALDKLFKVLGPRYEERPGGYTRILKLATPRLGDKADMCLIEFVDRQGELRPARP 131          
BLAST of mRNA_H-paniculata_contig16190.3566.1 vs. uniprot
Match: A0A7S2LPJ0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LPJ0_9STRA)

HSP 1 Score: 160 bits (406), Expect = 9.940e-48
Identity = 79/133 (59.40%), Postives = 101/133 (75.94%), Query Frame = 0
Query:    1 MKKRVNMNRLGRGFSHRWAMMRNMVTSFIYHERIRTTLPRAKELRKVAEKMVTHSKNGTEHHRRQAAAVVRENGALVKLFEVFGPRYKDRPGGYTRILKLHAPRKGDKADMAVIEFVDRPGELRPAKPAKGTQ 133
            M+KR+   +L R  +H+WAM+RNMVTS IYHERI TT P+AKEL+++AE M+   K+G+ H RRQA A++RE  AL KLFEV GPRY +R GGYTR+L+L  PR GD A M++IE+VDRPGE+R AKP    Q
Sbjct:    1 MRKRIAFRKLSRTPTHKWAMLRNMVTSLIYHERIVTTTPKAKELKRLAEWMIGFGKDGSLHARRQADAILREKPALTKLFEVLGPRYAERDGGYTRVLQLAKPRTGDNAPMSIIEYVDRPGEIRAAKPPASKQ 133          
BLAST of mRNA_H-paniculata_contig16190.3566.1 vs. uniprot
Match: A0A3M6VPU7_9STRA (Uncharacterized protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A3M6VPU7_9STRA)

HSP 1 Score: 155 bits (391), Expect = 1.380e-45
Identity = 86/147 (58.50%), Postives = 104/147 (70.75%), Query Frame = 0
Query:    1 MKKRVNMNRLGRGFSHRWAMMRNMVTSFIYHERIRTTLPRAKELRKVAEKMVTHSKNGTEHHRRQAAAVVRENGALVKLFEVFGPRYKDRPGGYTRILKLHAPRKGDKADMAVIEFVDRPGELRPAKPAKGTQGLRDLFEGEDEILQ 147
            MK RV   +L R  SHR AM+R MVT  I HERIRTTLP+AKELR+VAE++VT +K G E  R++A +V+R   AL KLF+V GPRY  R GGYTRILK    RKGD A+MA+IE+VDRPGE+R AKP  G +  R  FE + E  Q
Sbjct:    1 MKHRVAFRKLNRTSSHRQAMLRTMVTQLIEHERIRTTLPKAKELRRVAEQVVTMAKQGDEPARKRAQSVLRTPEALTKLFDVVGPRYALREGGYTRILKADF-RKGDGAEMAIIEYVDRPGEMRKAKPPTGVEAARAAFEAQAEATQ 146          
BLAST of mRNA_H-paniculata_contig16190.3566.1 vs. uniprot
Match: W7U3L1_9STRA (Ribosomal protein l17 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3L1_9STRA)

HSP 1 Score: 155 bits (391), Expect = 1.940e-45
Identity = 78/120 (65.00%), Postives = 95/120 (79.17%), Query Frame = 0
Query:    9 RLGRGFSHRWAMMRNMVTSFIYHERIRTTLPRAKELRKVAEKMVTHSKNGTEHHRRQAAAVVRENGALVKLFEVFGPRYKDRPGGYTRILKLHAPRKGDKADMAVIEFVDRPGELRPAKP 128
            +LGR  SHRWAM+RNMVTS + HERIRTT  +AKELR+VA++MVT +K+G+ H RRQAA V+R    L KLF+V GPRY  R GGYTR+LKL   R GD A+M++IEFV RPGELRPA+P
Sbjct:    5 KLGRTSSHRWAMLRNMVTSLVEHERIRTTTAKAKELRRVADRMVTWAKDGSLHARRQAAMVIRTKEHLKKLFDVLGPRYLTRAGGYTRVLKLQRFRPGDAAEMSLIEFVGRPGELRPARP 124          
BLAST of mRNA_H-paniculata_contig16190.3566.1 vs. uniprot
Match: A0A7S3M8Y7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M8Y7_9STRA)

HSP 1 Score: 155 bits (391), Expect = 2.260e-45
Identity = 81/132 (61.36%), Postives = 98/132 (74.24%), Query Frame = 0
Query:    1 MKKRVNMNRLGRGFSHRWAMMRNMVTSFIYHERIRTTLPRAKELRKVAEKMVTHSKNGTEHHRRQAAAVVRENGALVKLFEVFGPRYKDRPGGYTRILKLHAPRKGDKADMAVIEFVDRPGELRPAKPAKGT 132
            M+KR  + +LG   +HR AM+RNMVTS I HERI TT+ RAK +R+ AEKMVTH+K G   HRR AA  VRE  ALVKLFE+ GPRY +R GGYTR++KL  PR+GD A MA +EFVDR GELR A+P + T
Sbjct:    1 MRKRNLIKQLGFDDTHRRAMLRNMVTSLIKHERIMTTVARAKVMRRFAEKMVTHAKKGNLTHRRLAAGFVREKPALVKLFEILGPRYAEREGGYTRVMKLMKPRRGDSAAMAYVEFVDREGELRKARPPQST 132          
BLAST of mRNA_H-paniculata_contig16190.3566.1 vs. uniprot
Match: D0P085_PHYIT (50S ribosomal protein L17, putative n=15 Tax=Phytophthora TaxID=4783 RepID=D0P085_PHYIT)

HSP 1 Score: 154 bits (389), Expect = 2.770e-45
Identity = 85/147 (57.82%), Postives = 105/147 (71.43%), Query Frame = 0
Query:    1 MKKRVNMNRLGRGFSHRWAMMRNMVTSFIYHERIRTTLPRAKELRKVAEKMVTHSKNGTEHHRRQAAAVVRENGALVKLFEVFGPRYKDRPGGYTRILKLHAPRKGDKADMAVIEFVDRPGELRPAKPAKGTQGLRDLFEGEDEILQ 147
            MK RV   +L R  +HR AM+R MVT  I HERIRTTLP+AKELR++A+K+VT +K G E  R++A +V+R   AL KLF+V GPRY  R GGYTRILK    RKGD A+MAVIE+VDRPGE+R AKP  G +  R +FE + E  Q
Sbjct:    1 MKHRVAFRKLNRTSAHREAMLRTMVTQLIEHERIRTTLPKAKELRRIADKVVTMAKQGDEPARKRAQSVLRTPEALTKLFDVVGPRYALREGGYTRILKADF-RKGDGAEMAVIEYVDRPGEMRKAKPPTGIEAARAVFEAQAEATQ 146          
BLAST of mRNA_H-paniculata_contig16190.3566.1 vs. uniprot
Match: A0A7S1ZRF2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZRF2_9STRA)

HSP 1 Score: 154 bits (388), Expect = 7.060e-45
Identity = 84/145 (57.93%), Postives = 106/145 (73.10%), Query Frame = 0
Query:    1 MKKRVNMNRLGRGFSHRWAMMRNMVTSFIYHERIRTTLPRAKELRKVAEKMVTHSKNGTEHHRRQAAAVVRENGALVKLFEVFGPRYKDRPGGYTRILKLHAPRKGDKADMAVIEFVDRPGELRPAK-PAKGTQGLRDLFEGEDE 144
            M+KR+   +L R  +H+WAM+RNMVTS I HERI+TTLP+AKEL+ +A+++V   K+G+ H RRQA AV+RE   L KL EV GPRY DR GGYTRILKL   R GD A MAVIE+VDRPGE+R A+ P K  + L  L  G+D+
Sbjct:    1 MRKRIKFRQLSRTPTHKWAMLRNMVTSLIKHERIQTTLPKAKELKYLADQVVGWGKDGSLHARRQADAVLREKPVLTKLIEVLGPRYADRDGGYTRILKLSQNRVGDNAKMAVIEYVDRPGEIRAARVPKKRMEKL--LMMGDDD 143          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16190.3566.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6X7_ECTSI5.580e-6875.71Chloroplast 50S ribosomal protein 17 n=2 Tax=Ectoc... [more]
A0A7S3QJX6_9STRA2.890e-5662.42Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S0ASE6_9STRA3.890e-5158.17Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A835Z8L6_9STRA1.930e-4964.75Chloroplast 50S ribosomal protein 17 n=1 Tax=Tribo... [more]
A0A7S2LPJ0_9STRA9.940e-4859.40Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A3M6VPU7_9STRA1.380e-4558.50Uncharacterized protein n=2 Tax=Peronosporaceae Ta... [more]
W7U3L1_9STRA1.940e-4565.00Ribosomal protein l17 n=1 Tax=Nannochloropsis gadi... [more]
A0A7S3M8Y7_9STRA2.260e-4561.36Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
D0P085_PHYIT2.770e-4557.8250S ribosomal protein L17, putative n=15 Tax=Phyto... [more]
A0A7S1ZRF2_9STRA7.060e-4557.93Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036373Ribosomal protein L17 superfamilyGENE3D3.90.1030.10coord: 1..118
e-value: 5.7E-44
score: 151.2
IPR036373Ribosomal protein L17 superfamilySUPERFAMILY64263Prokaryotic ribosomal protein L17coord: 1..120
IPR000456Ribosomal protein L17TIGRFAMTIGR00059TIGR00059coord: 7..118
e-value: 5.0E-39
score: 131.1
IPR000456Ribosomal protein L17PFAMPF01196Ribosomal_L17coord: 20..117
e-value: 2.1E-35
score: 121.5
IPR000456Ribosomal protein L17PANTHERPTHR14413RIBOSOMAL PROTEIN L17coord: 1..155
IPR000456Ribosomal protein L17PROSITEPS01167RIBOSOMAL_L17coord: 34..56
IPR000456Ribosomal protein L17HAMAPMF_01368Ribosomal_L17coord: 5..117
score: 24.697
NoneNo IPR availablePANTHERPTHR14413:SF1639S RIBOSOMAL PROTEIN L17, MITOCHONDRIALcoord: 1..155

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16190contigH-paniculata_contig16190:506..4840 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16190.3566.1mRNA_H-paniculata_contig16190.3566.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig16190 88..4952 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig16190.3566.1 ID=prot_H-paniculata_contig16190.3566.1|Name=mRNA_H-paniculata_contig16190.3566.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=159bp
MKKRVNMNRLGRGFSHRWAMMRNMVTSFIYHERIRTTLPRAKELRKVAEK
MVTHSKNGTEHHRRQAAAVVRENGALVKLFEVFGPRYKDRPGGYTRILKL
HAPRKGDKADMAVIEFVDRPGELRPAKPAKGTQGLRDLFEGEDEILQQVK
QQMNKSDT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036373Ribosomal_L17_sf
IPR000456Ribosomal_L17