mRNA_H-paniculata_contig16181.3563.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16181.3563.1
Unique NamemRNA_H-paniculata_contig16181.3563.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16181.3563.1 vs. uniprot
Match: D8LIP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIP0_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 2.100e-34
Identity = 61/65 (93.85%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    1 IKGIVMDHGARHPDMPRNLKNCHILTCNISFEYEKTEVQSGFFYSTAEEREKLVESERKFTDEKV 195
            IKG+VMDHGARHPDMPR+LKNCHILTCN+SFEYEKTEVQSGFFYSTA+EREKLVESERKFTDEKV
Sbjct:  211 IKGLVMDHGARHPDMPRSLKNCHILTCNVSFEYEKTEVQSGFFYSTAQEREKLVESERKFTDEKV 275
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BLAST of mRNA_H-paniculata_contig16181.3563.1 vs. uniprot
Match: A0A7S2V196_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V196_9STRA)

HSP 1 Score: 120 bits (300), Expect = 2.560e-30
Identity = 53/65 (81.54%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:    1 IKGIVMDHGARHPDMPRNLKNCHILTCNISFEYEKTEVQSGFFYSTAEEREKLVESERKFTDEKV 195
            +KG+V+DHGARHPDMPR L+ CH+ TCN+SFEYEKTEV SGFFYS+AE+REKLVESERKFTDEKV
Sbjct:  209 VKGLVLDHGARHPDMPRRLEKCHVFTCNVSFEYEKTEVSSGFFYSSAEQREKLVESERKFTDEKV 273
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BLAST of mRNA_H-paniculata_contig16181.3563.1 vs. uniprot
Match: A0A7S1Z5M5_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z5M5_TRICV)

HSP 1 Score: 113 bits (283), Expect = 5.370e-30
Identity = 49/64 (76.56%), Postives = 60/64 (93.75%), Query Frame = 1 
Query:    1 IKGIVMDHGARHPDMPRNLKNCHILTCNISFEYEKTEVQSGFFYSTAEEREKLVESERKFTDEK 192
            + G+V+DHG RHPDMP+ LKNCH++TCN++FEYEKTEVQSGFFYS+AEEREKLVESERK+ DE+
Sbjct:  133 VNGLVLDHGGRHPDMPKVLKNCHVMTCNVTFEYEKTEVQSGFFYSSAEEREKLVESERKWLDER 196
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BLAST of mRNA_H-paniculata_contig16181.3563.1 vs. uniprot
Match: A0A2C6KEW8_9APIC (T-complex protein 1 subunit zeta (Fragment) n=1 Tax=Cystoisospora suis TaxID=483139 RepID=A0A2C6KEW8_9APIC)

HSP 1 Score: 113 bits (282), Expect = 1.520e-29
Identity = 51/65 (78.46%), Postives = 60/65 (92.31%), Query Frame = 1 
Query:    1 IKGIVMDHGARHPDMPRNLKNCHILTCNISFEYEKTEVQSGFFYSTAEEREKLVESERKFTDEKV 195
            I+G+VMDHGARHPDMP +LKNC I TCN+S EYEK+EV SGFFYS+AEEREK+VE+ERKFTD+KV
Sbjct:  171 IRGMVMDHGARHPDMPTSLKNCFIFTCNVSLEYEKSEVNSGFFYSSAEEREKMVEAERKFTDDKV 235
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BLAST of mRNA_H-paniculata_contig16181.3563.1 vs. uniprot
Match: A0A226NVN9_COLVI (Uncharacterized protein n=1 Tax=Colinus virginianus TaxID=9014 RepID=A0A226NVN9_COLVI)

HSP 1 Score: 113 bits (283), Expect = 4.290e-29
Identity = 50/65 (76.92%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:    1 IKGIVMDHGARHPDMPRNLKNCHILTCNISFEYEKTEVQSGFFYSTAEEREKLVESERKFTDEKV 195
            IKG+VMDHGARHPDMP +LKNC+ILTCN+S EYEK+EV +GFFYS+AEEREK+ E+ER+FTD+KV
Sbjct:  167 IKGLVMDHGARHPDMPASLKNCYILTCNVSLEYEKSEVNAGFFYSSAEEREKMAEAERRFTDQKV 231
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BLAST of mRNA_H-paniculata_contig16181.3563.1 vs. uniprot
Match: A0A812J4I7_SYMPI (CCT6A protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812J4I7_SYMPI)

HSP 1 Score: 114 bits (284), Expect = 1.770e-28
Identity = 50/65 (76.92%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:    1 IKGIVMDHGARHPDMPRNLKNCHILTCNISFEYEKTEVQSGFFYSTAEEREKLVESERKFTDEKV 195
            IKG+V+DHGARHPDMP+ L+NC+ILTCN+S EYEK+EV +GFFYS++E+REKLV+SERKFTDEKV
Sbjct:  208 IKGLVLDHGARHPDMPKRLENCYILTCNVSLEYEKSEVNAGFFYSSSEQREKLVDSERKFTDEKV 272
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BLAST of mRNA_H-paniculata_contig16181.3563.1 vs. uniprot
Match: E2L8Q4_MONPE (Uncharacterized protein (Fragment) n=1 Tax=Moniliophthora perniciosa (strain FA553 / isolate CP02) TaxID=554373 RepID=E2L8Q4_MONPE)

HSP 1 Score: 107 bits (266), Expect = 2.800e-28
Identity = 49/65 (75.38%), Postives = 58/65 (89.23%), Query Frame = 1 
Query:    1 IKGIVMDHGARHPDMPRNLKNCHILTCNISFEYEKTEVQSGFFYSTAEEREKLVESERKFTDEKV 195
            ++G+V+DHGARHPDMP+ L+N  ILT N+S EYEKTEV SGFFYS+AE+REKLVESERKF DEKV
Sbjct:   60 VRGLVLDHGARHPDMPKRLENAFILTLNVSLEYEKTEVNSGFFYSSAEQREKLVESERKFVDEKV 124
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BLAST of mRNA_H-paniculata_contig16181.3563.1 vs. uniprot
Match: A0A086JVI3_TOXGO (Putative TCP-1 chaperonin (Fragment) n=1 Tax=Toxoplasma gondii FOU TaxID=943167 RepID=A0A086JVI3_TOXGO)

HSP 1 Score: 111 bits (278), Expect = 4.090e-28
Identity = 49/65 (75.38%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:    1 IKGIVMDHGARHPDMPRNLKNCHILTCNISFEYEKTEVQSGFFYSTAEEREKLVESERKFTDEKV 195
            ++G+VMDHGARHPDMP +L+ C+ILTCN+S EYEK+EV SGFFYS+AEEREK+VE+ER+FTDEKV
Sbjct:   14 VQGMVMDHGARHPDMPTHLRKCYILTCNVSLEYEKSEVNSGFFYSSAEEREKMVEAERRFTDEKV 78
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BLAST of mRNA_H-paniculata_contig16181.3563.1 vs. uniprot
Match: A0A813CVQ0_9DINO (CCT6A protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A813CVQ0_9DINO)

HSP 1 Score: 114 bits (284), Expect = 4.240e-28
Identity = 50/65 (76.92%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:    1 IKGIVMDHGARHPDMPRNLKNCHILTCNISFEYEKTEVQSGFFYSTAEEREKLVESERKFTDEKV 195
            IKG+V+DHGARHPDMP+ L+NC+ILTCN+S EYEK+EV +GFFYS++E+REKLV+SERKFTDEKV
Sbjct:  208 IKGLVLDHGARHPDMPKKLENCYILTCNVSLEYEKSEVNAGFFYSSSEQREKLVDSERKFTDEKV 272
[Close]
BLAST of mRNA_H-paniculata_contig16181.3563.1 vs. uniprot
Match: A0A086KGI7_TOXGO (Putative TCP-1 chaperonin (Fragment) n=1 Tax=Toxoplasma gondii p89 TaxID=943119 RepID=A0A086KGI7_TOXGO)

HSP 1 Score: 113 bits (282), Expect = 4.410e-28
Identity = 50/65 (76.92%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:    1 IKGIVMDHGARHPDMPRNLKNCHILTCNISFEYEKTEVQSGFFYSTAEEREKLVESERKFTDEKV 195
            +KG+VMDHGARHPDMP +L+ C+ILTCN+S EYEK+EV SGFFYS+AEEREK+VE+ER+FTDEKV
Sbjct:  125 VKGMVMDHGARHPDMPTHLRKCYILTCNVSLEYEKSEVNSGFFYSSAEEREKMVEAERRFTDEKV 189
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16181.3563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIP0_ECTSI2.100e-3493.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2V196_9STRA2.560e-3081.54Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1Z5M5_TRICV5.370e-3076.56Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A2C6KEW8_9APIC1.520e-2978.46T-complex protein 1 subunit zeta (Fragment) n=1 Ta... [more]
A0A226NVN9_COLVI4.290e-2976.92Uncharacterized protein n=1 Tax=Colinus virginianu... [more]
A0A812J4I7_SYMPI1.770e-2876.92CCT6A protein n=1 Tax=Symbiodinium pilosum TaxID=2... [more]
E2L8Q4_MONPE2.800e-2875.38Uncharacterized protein (Fragment) n=1 Tax=Monilio... [more]
A0A086JVI3_TOXGO4.090e-2875.38Putative TCP-1 chaperonin (Fragment) n=1 Tax=Toxop... [more]
A0A813CVQ0_9DINO4.240e-2876.92CCT6A protein n=3 Tax=Symbiodinium TaxID=2949 RepI... [more]
A0A086KGI7_TOXGO4.410e-2876.92Putative TCP-1 chaperonin (Fragment) n=1 Tax=Toxop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16181contigH-paniculata_contig16181:137..1114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.5
Seed ortholog evalue6.8e-26
Seed eggNOG ortholog2880.D8LIP0
Preferred nameCCT6
KEGG koko:K09498,ko:K19401
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005832,GO:0005856,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0010035,GO:0010038,GO:0010043,GO:0016020,GO:0032991,GO:0042221,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046686,GO:0050896,GO:0051082,GO:0061077,GO:0101031
EggNOG free text desc.unfolded protein binding
EggNOG OGsCOG0459@1,KOG0359@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko03110,ko04147
Exons2
Model size195
Cds size180
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16181.3563.1prot_H-paniculata_contig16181.3563.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16181 137..1099 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929292.1317086-CDS-H-paniculata_contig16181:136..2691622929292.1317086-CDS-H-paniculata_contig16181:136..269Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16181 137..269 -
1691480803.6956894-CDS-H-paniculata_contig16181:136..2691691480803.6956894-CDS-H-paniculata_contig16181:136..269Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16181 137..269 -
1622929292.1486776-CDS-H-paniculata_contig16181:1052..10991622929292.1486776-CDS-H-paniculata_contig16181:1052..1099Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16181 1053..1099 -
1691480803.7141552-CDS-H-paniculata_contig16181:1052..10991691480803.7141552-CDS-H-paniculata_contig16181:1052..1099Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16181 1053..1099 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929292.164115-UTR-H-paniculata_contig16181:1099..11141622929292.164115-UTR-H-paniculata_contig16181:1099..1114Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16181 1100..1114 -
1691480803.7257361-UTR-H-paniculata_contig16181:1099..11141691480803.7257361-UTR-H-paniculata_contig16181:1099..1114Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16181 1100..1114 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16181.3563.1

>prot_H-paniculata_contig16181.3563.1 ID=prot_H-paniculata_contig16181.3563.1|Name=mRNA_H-paniculata_contig16181.3563.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
MDHGARHPDMPRNLKNCHILTCNISFEYEKTEVQSGFFYSTAEEREKLVE
SERKFTDEKV
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mRNA from alignment at H-paniculata_contig16181:137..1114-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16181.3563.1 ID=mRNA_H-paniculata_contig16181.3563.1|Name=mRNA_H-paniculata_contig16181.3563.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=978bp|location=Sequence derived from alignment at H-paniculata_contig16181:137..1114- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCAAGGGCATCGTGATGGACCACGGAGCGAGGCACCCCGACATGCCCCG
TAACCTCAAGAAGTGGGTGAATATAGAAATGTAACAGCTCACAACTTGTC
CTTCTGTTCACACTGCTAAGATGACAATTTTACGTCGACGGTACAGTTAC
GACATGAACCAGAGTGTTTGGCAAGGATCACTACCACGGCCATTATCAGG
CTAATAACTTGAACTTCGCGTCCTGACGGGACAGCGCGTCTTTTCCCTGT
AGCAAGTATGGAAGGGAATATGCTGCGCGATGATCCAATGATCCAGGAGG
CTCGAAATAGGACAATTTGTTGATCGTGTATCAGGGAACGCGCCCCAGAG
ATGCTACTCTAACATCCCCTGTAAAGGTTGAATCACCCTCATTATCTTGT
ATGACATATGCCAAACAGCAAGGTGTGGTACCCCCCCCCGGACCAGTAGG
AAAAACAAGATACGGATGAATAGCCCGCAGAGGAACAAATAACTCTGTCC
TGTAAAAGGAAATGTAGACTTACTTCAGTATGGAAGCATCGGATAGAGGT
TTTTGCGTTAGCCTTCCGGGGGTTGAAAAAACCCAATCGTAAGCCGTAGT
CTCTTGATTATTTAAACTCGTACTTAACAACACCGAGACGAGGGCATGCG
AGGTTTGTCTTCATCATCCAAACACATGAGTACGCCTTCCCCCCCCCATC
CTCCCCCATATCATCATCATCCTCCATTTTTTCGTGTTGATATTTTATCC
TCTCCACCTTCCTCATGTTTTTTCCCTCTCCATCCGCCAACATGAAAACA
TCCATCATTAACGTCAATTCCTCTACACTACATATTACACCTCAGCTGCC
ATATCTTGACGTGCAACATCTCGTTCGAGTATGAGAAGACGGAAGTCCAG
TCCGGGTTCTTCTACTCCACAGCGGAGGAGCGCGAGAAGCTAGTGGAGAG
CGAGCGCAAGTTCACCGATGAAAAGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig16181:137..1114-

>mRNA_H-paniculata_contig16181.3563.1 ID=mRNA_H-paniculata_contig16181.3563.1|Name=mRNA_H-paniculata_contig16181.3563.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig16181:137..1114- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACCACGGAGCGAGGCACCCCGACATGCCCCGTAACCTCAAGAAATG
GACCACGGAGCGAGGCACCCCGACATGCCCCGTAACCTCAAGAACTGCCA
TATCTTGACGTGCAACATCTCGTTCGAGTATGAGAAGACGGAAGTCCAGT
CCGGGTTCTTCTACTCCACAGCGGAGGAGCGCGAGAAGCTAGTGGAGAGC
GAGCGCAAGTTCACCGATGAAAAGGTACTGCCATATCTTGACGTGCAACA
TCTCGTTCGAGTATGAGAAGACGGAAGTCCAGTCCGGGTTCTTCTACTCC
ACAGCGGAGGAGCGCGAGAAGCTAGTGGAGAGCGAGCGCAAGTTCACCGA
TGAAAAGGTA
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