prot_H-paniculata_contig1618.3561.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1618.3561.1
Unique Nameprot_H-paniculata_contig1618.3561.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length438
Homology
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BLAST of mRNA_H-paniculata_contig1618.3561.1 vs. uniprot
Match: D7FQD2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQD2_ECTSI)

HSP 1 Score: 228 bits (581), Expect = 9.850e-67
Identity = 157/419 (37.47%), Postives = 204/419 (48.69%), Query Frame = 0 
Query:   31 SLSYLCLRSLESSLGKGLASLSLQGLPLGLAEKIYRYVAERGSRMAQMEVSRALAPLLSRTVICLDFTNSETEHQSSCSGGSSCGYSNGFIGESALLELANGCGMGLIHLDLGGCRLVKNAGVLAVLARCQNLSSLGLSGLDGVSDQALYLIPHQIPYLTKLNLAGLSGITASGIAYLSFLPSLEHLNLARCCQIGDEAAAALGRGNCSDSLRWLDLSGTATTDDGVSSLHHTKLLEFISLSSTTVSLALVNALARDLNLPAALPDAPKMHARSNRTLLMGSRWSRRQSGFAPRRLPHSTRNTAGSLRYGHGTSKRGWEG-----------GPSKLLRIGTGVGVGDCQVGGSRKRPVLAGEPVVQK-VQVGFGDGEGGDXXXXXXXXXXXXXXXXXGRELLVELVNGIVRLWPAVPVR 437
            +L  LCLRSLESSLGKGLA+  LQ LPLGLAE +Y +VA  GSRMA ME+ RALAP+L + V  LDF+ ++                   +G+SALLELANGC   L+ L+L  C  + +  +LA L +C  +  L                                    SG+AY+++LP+LE L LAR C + D A  A+  G C  SLRWLDL+ TA +    +SL   + LE             V ALARDL LPA LP+APK  ARS+R LL+GS+WS  Q    P++   +T  TA       G   + W             GPSK +R+          +G + +    +  P     V+VGF D                      GR+LL+ LV GIVRLWPAVP R
Sbjct:   53 TLGILCLRSLESSLGKGLATFDLQDLPLGLAETVYDFVASAGSRMAHMEILRALAPILRQHVSSLDFSRAK------------------IVGDSALLELANGCDSSLVQLNLSSCCFITDGALLATLLKCPGVKDLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGVAYIAYLPALEQLCLAR-CNVSDAAVVAITTGVCRQSLRWLDLTCTAISAAAAASLRDLQRLEXXXXXXXXXXXXXVAALARDLRLPAFLPEAPKTRARSSRALLLGSKWSETQLRSLPKKRAATTAATAA------GAPAKSWRNSIASVICYERDGPSKAMRL----------IGAASRVSSSSSSPCADDLVEVGFRD----------------DGIEEGGRKLLLNLVQGIVRLWPAVPSR 420
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1618.3561.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQD2_ECTSI9.850e-6737.47Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 212..236
e-value: 10.0
score: 14.4
coord: 134..159
e-value: 97.0
score: 6.8
coord: 160..185
e-value: 30.0
score: 10.8
coord: 186..211
e-value: 50.0
score: 9.1
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 212..233
e-value: 0.011
score: 15.8
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 112..184
e-value: 1.6E-8
score: 36.1
coord: 185..289
e-value: 9.1E-18
score: 66.2
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 106..275
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 118..274

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1618contigH-paniculata_contig1618:12323..16245 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1618.3561.1mRNA_H-paniculata_contig1618.3561.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1618 4052..17477 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1618.3561.1 ID=prot_H-paniculata_contig1618.3561.1|Name=mRNA_H-paniculata_contig1618.3561.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=438bp
MSEWFPPDIISRTRHEGYLSCTRVEDAGDVSLSYLCLRSLESSLGKGLAS
LSLQGLPLGLAEKIYRYVAERGSRMAQMEVSRALAPLLSRTVICLDFTNS
ETEHQSSCSGGSSCGYSNGFIGESALLELANGCGMGLIHLDLGGCRLVKN
AGVLAVLARCQNLSSLGLSGLDGVSDQALYLIPHQIPYLTKLNLAGLSGI
TASGIAYLSFLPSLEHLNLARCCQIGDEAAAALGRGNCSDSLRWLDLSGT
ATTDDGVSSLHHTKLLEFISLSSTTVSLALVNALARDLNLPAALPDAPKM
HARSNRTLLMGSRWSRRQSGFAPRRLPHSTRNTAGSLRYGHGTSKRGWEG
GPSKLLRIGTGVGVGDCQVGGSRKRPVLAGEPVVQKVQVGFGDGEGGDGG
GEGGDGGGGGRVGYGGRELLVELVNGIVRLWPAVPVR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf