mRNA_H-paniculata_contig1618.3561.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1618.3561.1
Unique NamemRNA_H-paniculata_contig1618.3561.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1618.3561.1 vs. uniprot
Match: D7FQD2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQD2_ECTSI)

HSP 1 Score: 228 bits (582), Expect = 9.330e-62
Identity = 157/419 (37.47%), Postives = 204/419 (48.69%), Query Frame = 3
Query: 3747 SLSYLCLRSLESSLGKGLASLSLQGLPLGLAEKIYRYVAERGSRMAQMEVSRALAPLLSRTVICLDFTNSETEHQSSCSGGSSCGYSNGFIGESALLELANGCGMGLIHLDLGGCRLVKNAGVLAVLARCQNLSSLGLSGLDGVSDQALYLIPHQIPYLTKLNLAGLSGITASGIAYLSFLPSLEHLNLARCCQIGDEAAAALGRGNCSDSLRWLDLSGTATTDDGVSSLHHTKLLEFISLSSTTVSLALVNALARDLNLPAALPDAPKMHARSNRTLLMGSRWSRRQSGFAPRRLPHSTRNTAGSLRYGHGTSKRGWEG-----------GPSKLLRIGTGVGVGDCQVGGSRKRPVLAGEPVVQK-VQVGFGDGEGGDXXXXXXXXXXXXXXXXXGRELLVELVNGIVRLWPAVPVR 4967
            +L  LCLRSLESSLGKGLA+  LQ LPLGLAE +Y +VA  GSRMA ME+ RALAP+L + V  LDF+ ++                   +G+SALLELANGC   L+ L+L  C  + +  +LA L +C  +  L                                    SG+AY+++LP+LE L LAR C + D A  A+  G C  SLRWLDL+ TA +    +SL   + LE             V ALARDL LPA LP+APK  ARS+R LL+GS+WS  Q    P++   +T  TA       G   + W             GPSK +R+          +G + +    +  P     V+VGF D                      GR+LL+ LV GIVRLWPAVP R
Sbjct:   53 TLGILCLRSLESSLGKGLATFDLQDLPLGLAETVYDFVASAGSRMAHMEILRALAPILRQHVSSLDFSRAK------------------IVGDSALLELANGCDSSLVQLNLSSCCFITDGALLATLLKCPGVKDLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGVAYIAYLPALEQLCLAR-CNVSDAAVVAITTGVCRQSLRWLDLTCTAISAAAAASLRDLQRLEXXXXXXXXXXXXXVAALARDLRLPAFLPEAPKTRARSSRALLLGSKWSETQLRSLPKKRAATTAATAA------GAPAKSWRNSIASVICYERDGPSKAMRL----------IGAASRVSSSSSSPCADDLVEVGFRD----------------DGIEEGGRKLLLNLVQGIVRLWPAVPSR 420          
BLAST of mRNA_H-paniculata_contig1618.3561.1 vs. uniprot
Match: A0A6H5JDR1_9PHAE (MYND-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JDR1_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 1.050e-30
Identity = 76/171 (44.44%), Postives = 97/171 (56.73%), Query Frame = 3
Query: 1524 RSVRYCCRECQRQHWTME-HKDSCAYLSTRTAMIHESEILQDTARQQSMDSRTGQSILTILDSIVGSRVIPPEEAPTPAR--ANGWELCPVVNMLGVPLAIKKVSACQCQQCVGCTATQDVPANQIATRLAIEPQTGRAPFRWAGSGTNHLGTVWVARTDGQAFTSKEYAV 2027
            ++ +YC RECQR+ W +  HKD C  L+ +         LQ          R+   I++I D  V + ++  EE PT     A GWELCPVVNMLGVPLAI KV  C C  C+   +    P NQ+ATRLAIEP  G AP +W G   NHLGTV VAR D + FT +++ V
Sbjct:   21 KTAKYCSRECQRRDWIVGGHKDRCRELARQRGATDSEAALQ---------GRSTVGIVSIFDQQVSNSIMSLEELPTAGAPGAQGWELCPVVNMLGVPLAIMKVCPCACHICLRGNSQIPEPRNQVATRLAIEPHNGLAPPKWQGGPHNHLGTVAVARMDLRDFTVEDWRV 182          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1618.3561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQD2_ECTSI9.330e-6237.47Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JDR1_9PHAE1.050e-3044.44MYND-type domain-containing protein n=2 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1618contigH-paniculata_contig1618:4052..17477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score229.9
Seed ortholog evalue2.2e-57
Seed eggNOG ortholog2880.D7FQD2
KEGG koko:K10268
Hectar predicted targeting categoryother localisation
EggNOG free text desc.modulation by host of viral RNA genome replication
EggNOG OGsKOG4341@1,KOG4341@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons7
Model size6202
Cds size1314
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929291.762461-UTR-H-paniculata_contig1618:4051..51511622929291.762461-UTR-H-paniculata_contig1618:4051..5151Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1618 4052..5151 +
1691480803.5190094-UTR-H-paniculata_contig1618:4051..51511691480803.5190094-UTR-H-paniculata_contig1618:4051..5151Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1618 4052..5151 +
1622929291.775858-UTR-H-paniculata_contig1618:5173..57391622929291.775858-UTR-H-paniculata_contig1618:5173..5739Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1618 5174..5739 +
1691480803.5333707-UTR-H-paniculata_contig1618:5173..57391691480803.5333707-UTR-H-paniculata_contig1618:5173..5739Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1618 5174..5739 +
1622929291.7892017-UTR-H-paniculata_contig1618:8207..84331622929291.7892017-UTR-H-paniculata_contig1618:8207..8433Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1618 8208..8433 +
1691480803.5516388-UTR-H-paniculata_contig1618:8207..84331691480803.5516388-UTR-H-paniculata_contig1618:8207..8433Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1618 8208..8433 +
1622929291.805537-UTR-H-paniculata_contig1618:9741..98771622929291.805537-UTR-H-paniculata_contig1618:9741..9877Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1618 9742..9877 +
1691480803.5622573-UTR-H-paniculata_contig1618:9741..98771691480803.5622573-UTR-H-paniculata_contig1618:9741..9877Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1618 9742..9877 +
1622929291.8204317-UTR-H-paniculata_contig1618:10694..123221622929291.8204317-UTR-H-paniculata_contig1618:10694..12322Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1618 10695..12322 +
1691480803.5727558-UTR-H-paniculata_contig1618:10694..123221691480803.5727558-UTR-H-paniculata_contig1618:10694..12322Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1618 10695..12322 +
1622929291.8790674-UTR-H-paniculata_contig1618:16245..174771622929291.8790674-UTR-H-paniculata_contig1618:16245..17477Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1618 16246..17477 +
1691480803.6101484-UTR-H-paniculata_contig1618:16245..174771691480803.6101484-UTR-H-paniculata_contig1618:16245..17477Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1618 16246..17477 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929291.8385255-CDS-H-paniculata_contig1618:12322..128531622929291.8385255-CDS-H-paniculata_contig1618:12322..12853Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1618 12323..12853 +
1691480803.5840492-CDS-H-paniculata_contig1618:12322..128531691480803.5840492-CDS-H-paniculata_contig1618:12322..12853Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1618 12323..12853 +
1622929291.851279-CDS-H-paniculata_contig1618:14227..143681622929291.851279-CDS-H-paniculata_contig1618:14227..14368Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1618 14228..14368 +
1691480803.592037-CDS-H-paniculata_contig1618:14227..143681691480803.592037-CDS-H-paniculata_contig1618:14227..14368Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1618 14228..14368 +
1622929291.8662825-CDS-H-paniculata_contig1618:15603..162451622929291.8662825-CDS-H-paniculata_contig1618:15603..16245Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1618 15604..16245 +
1691480803.6025949-CDS-H-paniculata_contig1618:15603..162451691480803.6025949-CDS-H-paniculata_contig1618:15603..16245Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1618 15604..16245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1618.3561.1prot_H-paniculata_contig1618.3561.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1618 12323..16245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1618.3561.1

>prot_H-paniculata_contig1618.3561.1 ID=prot_H-paniculata_contig1618.3561.1|Name=mRNA_H-paniculata_contig1618.3561.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=438bp
MSEWFPPDIISRTRHEGYLSCTRVEDAGDVSLSYLCLRSLESSLGKGLAS
LSLQGLPLGLAEKIYRYVAERGSRMAQMEVSRALAPLLSRTVICLDFTNS
ETEHQSSCSGGSSCGYSNGFIGESALLELANGCGMGLIHLDLGGCRLVKN
AGVLAVLARCQNLSSLGLSGLDGVSDQALYLIPHQIPYLTKLNLAGLSGI
TASGIAYLSFLPSLEHLNLARCCQIGDEAAAALGRGNCSDSLRWLDLSGT
ATTDDGVSSLHHTKLLEFISLSSTTVSLALVNALARDLNLPAALPDAPKM
HARSNRTLLMGSRWSRRQSGFAPRRLPHSTRNTAGSLRYGHGTSKRGWEG
GPSKLLRIGTGVGVGDCQVGGSRKRPVLAGEPVVQKVQVGFGDGEGGDGG
GEGGDGGGGGRVGYGGRELLVELVNGIVRLWPAVPVR*
back to top

mRNA from alignment at H-paniculata_contig1618:4052..17477+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1618.3561.1 ID=mRNA_H-paniculata_contig1618.3561.1|Name=mRNA_H-paniculata_contig1618.3561.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=13426bp|location=Sequence derived from alignment at H-paniculata_contig1618:4052..17477+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCACGGGTCAGCCCAGGATGCCCGAACGTGGCCCGTTCCTGCGGCTTGAA GCTACGAAACCCCTGCCACGCAGATGTTCTGCAGCCTGAGCAATCGAGGT TTCGCCGACGATGGAGCTCTTGTGTCTGCTCCCACTGCCCGTTCTCTCGA CGATGCCGTCCCCGGCGTCTTATGCTGAGAGCTCAACTCCACGAGATAAA GGGACGTCTATCTCCTTCCCAACTATTTTTACCGTCGGGATAAGGGAATC CGGAACAGGGGGTTGTGGTGTGGTGTGGGTGCGCGTCAACATCTAATGCA CAGAGTCGCAGCCCATAAAATTCAAAAATTCAAACGAAGAAATCGGATTC AGTGCAAGGGGCCTGGGCAGGGCCGAACCCAAGAGTGCTGGGGCAATGGA GTGATGTGATGCAGAAAAAACCAAGCCGACCGCATAGATCGAGGTTAATC TTTTACCTATGCTGTACCCCCCGACTACTGAGTACCAAGAAGAGATGGCA CAGTAAAAGTAACGGCAATAACAACAGCAGCAACGCAATCTCTCTCCCTG TTCATGTGTGTGCTCCGTCGACTTGTCTCCCACCATCAAGAAACTGGACC CCTATTTCGGTATATTGTAGCATTCCCCAAAACCAATCTGATCCCGTTAT ACTTGTAGGCATGGGTCATTCACTCCACACCTTCACCAACAGCATAGCAG AAAATGAGTGCGACATGTGATGCATCCGGTTGCCATGAGCCTGCTACACA ACGGTGCTCTCGCTGCAAGTGAGTGGATGAACCACAGAATTGCGTCTCCG ACTTGCGCTGTCTGTCAACTCTTATAGCTCTGTATAGAAGTAACAGTGCT CAACAGAACAAAGTACGAGTACTTGCACAGGATTGCTGAAGTGCGACCAT GTCAGCGCGCGTGTGTGTTCGACCAGTCAAGGAGTTTCAGCTGGGGTGTG TTTTATTTTGTACAGCCGGCATTTTACCACAGTTGATCTGCAGTGTATAT GTATGTCTATCTCCCTCTCGTTTTCCCTCTCTGTCTGCTTTTGTTTCTCT TTGATGGACCTGGTCTGGACATTGGTGATGATATGATCTTACCGTCGTTT GCTCTCTCTGTCTGGATATATCCTGACCTCGACCGTGGACAGCTCCCAGG ATTGTTGGTGGTGGATGACTACTGCTGCAAACATATGTTATGACTGTCGT ATTATTTATATTTTCTGTGCCGTGTATATGAGATGCCCTGCGCTCCCGAA GTCTCTTGAGTGCTATTTCATCTGCTGAATGCAAACCGTCTGTCGCTCGA TTCTCTAACCATCCTCACACAGAGCAGTGTAAACCACGGTGAACACCTCA AATTACCGTTATCCCTGTTCCATTAAAATACCCCCGCGCCCATGCGCTGC ACCGACCATTCAATGTTTGACCGCTACCGAAAACCGTACTCCGTCTTCAG GTTGCCCCGATTTGCCTCCAACGATTCTTACATAAAACACTGCATTACGC CCCCCTCCGTTGTTGTGTGGCATTGCGTCTCATCGGGACATACGAAGATC TGTGCGATACTGTTGCCGCGAGTGTCAGCGGCAGCATTGGACGATGGAGC ACAAGGACAGCTGTGCTTATCTCAGCACTCGTACGGCAATGATACATGAG AGCGAGATACTGCAAGATACCGCACGCCAACAGAGCATGTGGGTGAACAT GTTGACCCCTCCTTGTCCCTGTAACAACAAACACAGACTTGTCTGTGGCG ATTCTACCAGCAACTTGATTTGCAAGATTGTTTTCGCTTGTTTTATGTTT TTTGTCTGTTTCTTTAGTCTCGGTCGAGCTGCAGCAGTATACAGTACAGC ATCCTCTTTGTTGGTGTCAAGCACATACTGTGTCATCCACACCGAGTTCT TGGGAGCCCCCCTCCCCATTTCTTCTTTATATTTTAACTGATGAATGTAC GCAGCTTTGATTTCAGCTAGACTGCATAACTTCAGCACGCGTACAACAGA CTTGCTGTGTCTGCCACCCCGTTCACTTCTACCGGCCTGAAACGCGGCCA TACATCGCACTGACGGTTGAAGTAGGGCACAAGAACTTGCGAACTTTCTA TTTTATGGACGCTCGAGTCCGTTTCTTTTATAGGCATCGAGATCTTGACC TTTTTTGGCTGTAGGATTTCACGCAGTACCATGTATCTACCCATCTTGTT TTACTTTTGTAAAAATCAGGTTTCGAAAGCACAACTCGAACGCCAGCAGC TGACAGACGGCTTTATCAGGACTAGGTTTTTTGTTTTTTTTCCTGCGGGC CGTGGTCGCACACGACTGAGAGTCTAAGTTTTCAATTTTGTATGCAGCTG TCAACCGATGAGAATAAGACATAAATGGTCCGCACTGATCGGGATACCCG GCGCGCAGTTCGCTCGTTGTAAGCTGAAGGGCGCTTTGTTGCCTTGTACC AACATAGAAAAGTTCTTCAGTTTAGGAGAGGATGCGAAGAACACTCCCCC TTTGCCTACCGTCCGTGTCCATCGAGCGTCAAACGACGTGGTACATACAC TCATGTACGTCTCTCCAAAACGTAACAAAACCGAAAACGAGAGCGAACAA AAACGTTTCGGTTTTCGCTTCCCCAGGTGTGTTCGGAGGGCCGCAGCAAA AAGCGTGGTAAGCAAAAAACTGACAACCCCCGCACAGGAAGACACTGGCC CCAACACCACCGTCTCGAATATTGGCGTGAAAGTTCCCGTGCCTCCAAAA CCACTCTTCTTGATAGCCCAAAATGTGACCCTTGGTCAGCCATGCCGTGT GCTTCGTTTCGATTTTGAGTGTGTCAAGAACTGAAAGGGCAATGCTACTA GTATGTGTCGAGGTGTTAAGCATCTAGTGGGACTGTCTATTGGGAGAATC TGAGATTCCTGCTGTACGCGATGAAAGGTAAGGCACACATTTTTCACCGC ACCTTCGTCACAATGTCACAGTTGTGAACAAAAAATAACGTGGCGCTGAT CGATTCGCCTTAATTTTTCGTTCTCGAGATTGACTTGGAGTTAGAGGAGC TTCCCCGAACAGAAAAATGAGTTTGGTGTTTTTCATACCCCGTGCGGATT AGTCATAGCCGAGTTTATTTTCATTTTTAGAGCCGTTATATTTCGCAAAA TGAGTTCTATTTCAATACCGTGAAACAACTATGAACAGAGTATATAAGTT TCGCTCGCTGACACCACAGATGCACGTCTCGGCATCCCAAGGGAAACTCC GTTAGCGTGGGCCCACTTGAAAATGCTGAGATACTGCCACTTTTCACCTG TAGCCGCCGCGTGTTGGTTAACATCAAACCTGGTCGGAGGTAGCTACTGG GACATATATATCGACGTGACGACCTGCTGCCACCGTGCAGGTGCCTATCG TCAAGTGGGCAGCCAATATCTTGCGCTTGCTTCTTTGTGGTGGAAACTCG CAGCAACGACGGACAGGGTATTCCGCTCCCAGTCCTCAGGCCAGGCTACC TGAAAACAAAACCGTGACTCGTTCTCGAGGATGGCCACATCGCCCTATTC GACAGCACATTGAAGTGCCAAGTCATCGTTCGCAGACGTCTCTTTCTCTA GATACTTGATGGCATCAACGTGTCCAACGTCCGCGGCAGAAATATAGTAC AGTTGTCTCTCGCGTGCTGTTGAATTGAAAATGGCAACCGAATGGCCATA TCCTGATCCAGCATGAATTACCGGGCGCGCTGCAACCCGCGCAGGTGTCC CGCAAGGATAGTGTTGTTTCCCGATCAGTGCTGGCCGAATTCTGCAGCCC GAAGCCAGTTTTCCTCACCCTAGCATGGAGTGAGCAGCTTGATGCGGCCA TGTATATACTACCATTGTGGCGCAGGGTAATCGCAGCGTGCGGTAAGCGC CTCATTTGACCATAAACCGTACCCTCTGGTGCCCGCTCTTCCGTCGTGCG GGAGAAGGCGGTAACCCGCATATTGCAGCCCTTAAGTACAAGCACTACCG GAAGAATTTTTTCGATTACCCGCCGTGTGGTGTGTCGAGATTTTCGAACC AAAAATCCTGCATTTGTACCGGATCCGTGTCGCTCATACATGTTGCAATT GACTCTGTTTTAATCCCATGTTTTTTCTCTTTTATCGTTGTGTCGGGCAA TGGCAGGGACTCGCGTACAGGACAGAGCATACTGACGATACTCGACTCCA TTGTCGGGTCGCGCGTTATTCCGCCGGAAGAAGCCCCGACACCGGCAAGG GCAAACGGTTGGGAGCTGTGCCCTGTTGTCAACATGCTCGGTGTCCCGCT TGCTATCAAGAAGGTTTCCGCCTGCCAATGCCAGCAATGTGTGGGGTGCA CGGCAACCCAAGACGTACCTGCGAACCAGATTGTGAGTTTTCGTTTTCGG GCCGATTACAGCTCCCCTTGAACAACTGTATTTCTTATGACAATCGATGC AGCGTTGGTAGCGCATAAAGCTGAACGTTGGACTCGTTCAGATTTGTATC CTGAGGTTGAAGTAGCCTATAATGCGGTGTTTGGTCGCTATGTATTTTGT TTGACTTCCCCTCATGTACGTTGAACAACTGTATTTCTTATGACAATCGA TGCAGCGTTGGTAGCGCGTAAAGCTGAACGTCGGACTCGTGCAGATTTGT ATCCTGAGGTTGAAGTACCTTGTAATGCGGTGTTTGGCCGCTATGTATTT TGTTCTACTTCCCCTCATGTACGTTTACACGGCTTCCCCCTTTGACTTGA CAGTCGCAGGCGTGCCGTAGGAATCAAGATGTTTGAATGTTCCTTCTGCC GTTATATATTCATTGATCTCTCCACACCCCTAAAACATCGGGGACAACAC TATTCAATCTTATCACATGAACCGTTTCTATTGAATTCCTAGATCGTCAA CTATAGTGCTACTCGAATCAGAGTACACAGTAGAGTGCGAAATCGAAGAC ATTTTGTCACTAGAGTAGCGAGCTTCCGCGTCGAGAGCACCGTGGATCAT GCACTCGAGTGTGTTGGAAGGAAACCACTGAGCAGGAATAATGTTCTCTC CCCACTATAGCGGCGGATGGTCATTGAATGCCAAATCAAGCGTTGAAAAT ATAGTCTAGAGCGATCTTATACAGCGAGTGTTTGCTTCGTGCCTTTTCAG ACATCGATCATCCCGCAAAATGTTATCCTAACACTGTATATGACAGACGG CCTTACATCACATTGGCACCCGAACGAGTCTAGCACGACTTGTCAATGCG ATCATGTGGAATAACACGTACGTGGCGTAGAACTAGACACAGGAGAAGGC ATGGGCGGTCAAGCAAACGTTGTGTCTTGGCTGTCTTGTACGTGCTGTTG GTGTTCTGTACAAAGCTGTGTATGTATACTCTTCCTTTTATTGACAGATG CATCTGGGAAACTTGATACCTCTTGCACGGTTTATGGCGTTTCACCGTGT TGGTCGTACTACCTGGTACGGTTACCACTCACGGCACCACGTAAAGTACG CGGGACTCTCCAGCTATCTGTACAGCCTTATTAGTAGTGACTTCAATATT TCTGCATGTCTCCACTGTTTTCACTGCATTCAGTATGTAGGATGATGGCA TGAGCAACGACCAAAGTAATAGCCAGGCTACAAGTAGTACTCCGTATCTC ACTCAGTCCACGCGTTTTTTTTTTTGTCATTTTCCCTTAGGCTACTCGTC TAGCGATCGAGCCGCAGACTGGTCGGGCACCATTCAGATGGGCGGGTAGC GGTACTAATCACCTTGGCACCGTGTGGGTGGCGCGGACCGACGGTCAAGC CTTCACCTCGAAAGAGTATGCTGTAAGTGCGTCCTTGTACTGTAGCAGTT ATTAGGGCTTACACGTTCGTGGTTGTCGAAGCTGTCATGGCGTTGGACAT GTTGCGCTTGTCGAGGAGAGCGATTAGGTGAACGTATTGGAAGGGGGGGG GGGAATTGAGACCATGTGAGAAGGTCTTCGTAGCATGCACACGAGTTTTT TGTGTGCCTGTGCGTTTATTTACACCCGATCATTGTGGTGGCAGGGCTCA GGGCTATTGGTTTAATATCCCCGCGCAGATGCTTCCAAGTCAACCTGTCT AAGGAAGACAACTAACCGTTCGAATTTGACCGCCGAAAAAAGCAGAGCTG TGACAAGGTAATACATTACGTTTTCTTTTCCCATTAGACATCCAGAACTT CGGCGCCACTCGTGGGTACTCGGTTATTGATTAGATACGTTATCAATGTA TTCGACATCGTACAAGCCACAAGGTGTTTTGTTTGTTGTTCGCGTCGTTG TCGCACAAGGATACTGCTGAAGCGGCGACACCAATTTTACGACCAAGCAA TGTAGACGTTCTGCACCTATGTCCGTATCTGCAGGACAAAGGCTGCTCTT GTATATTTGTAATTCAATCGTTCCGCGAGCGATTAGATTTCGTGTAAATC TATACCCATGTATGTACGCCCTCTCACCGTAACCTCTTGGAGACAATACC GTGGTGAAGGCGCACCACAGCACTACAGCGAATCCATCTTGTGATCACGG TCAGCCTATACCTGTTCTCAGTAGCTTGTCTCAACGTGCTGTACACCCGC TATTCGGCACTTTCGCGTTTTCCCCAATGGTCACAAAACGCAGATCCTGG ACGAGTACATTTTCAACAACATCTTCGATGTTTGGGGCTTGGATCCCCCC GACCGCGACAGGATGCTGCCCAGCGTGTACAACAGGCAGGCGTACTCGCG CTACTTCGCCAGCAGGATGTCCGAAGACGGCATGCGTGCCGGCTTTTGAA GCATCTGCAAACTCACCAAAATCTAGAAATTGGTATTGTGCGCCGTTCAA CAGTAGTTGGGTCATGGTGGCGCTGTGGGAGAGATTGGGGGGGGGTTCAT TATGTCGACAGGAACAGGAATTGGGGGAAATAATGGCCGGTAAAGCTTCT GTTTCCATCAACTGAGCGCACAAATAGGTTGTTTTTGCATTTGACGTTTT GCGACGGCTTACGGGGATGCATTCATTTCATATACATCCTTTTTAAAGGG AGGGTGCGGTTGACGTTACGCCTCCGTTCAAAGGTTCTTATTTTTTTTTG CAGCATCAACTGTGGTGTGGGGGTATTGATAGTGTTCCACCTCATTCCCG GTGAACGAGGCTAGGGTAAATGATACCTCTCTCGTTCCGGGGGTATGTTT AGCTTGGAGTTTCTCGATTCTCACCACACTCTCACATTCACATTGTGCGC CAATGCCTATTATAATTACAATTTGGGCAACAAGATTAGGATTTTTTTTT CATGCTTTCGCTGGAAGCTAGTGTTGAAAAAAGACGACGAGCTGTTCGAG GGGAAATTTTTAAGGAGAGGAAAATTGCTGGCGTGAGGAGGTGGTGCGTG TATTCAAAGGCTAGCCCTAGGACGTGTAACGTAGATAGAAAGTAGAAAGT AGAAATAGCGTAGAAGCGTTTTGTCCCACCAGTTTTTCAGCAGTTTTGCC CAGTGTCTGCACCTAGGCTGAGATCACCAATCCCTCTGGGTGGGACTTTA TTCGTTTGTGTTTGTGTTCGTGATGTTGCCCAGGTAGTAACTTCGTCGAG GCGCAATTCGTACTCTTCGGTATATATATATATATGGTGGTGTAAGCGAA GCCGCATACACAGGGCAAAGTCGGATACACATGTGCGTTGCCTTTGTCCA CTTGATGTCCACTTGACGTCCACTTGGTGAGAGTTGTACGTTTCGATGAC CCAGATTATATTGTCAAAGAAGTCTTAATTTTTAGTAGTAGTGGTTGTGT ACAGCTTTGAGCGAACTGTTGGCCGATGGGATCTGCATTCTTTTGTACGC GCAACATCATCTGACCATATTTTTTTATGAGCAGTTAACCGCTCTGTGTG CGTGAGGTTTTCGTGCTATCGGGAGATGAACAATACAAGTGGTGCATGGG TTATTAATAGGGTAATTTTGTTGGGATCTTCAATTCCGCGTTTTGTGTAC AATGCTGGTGGTGGCCTGGATGGATGTTCAAGAACCCTTTTCTTGATTCA TGTAGGTTGATTGTATAGTATTAATAGTGGAACTTACGGGTTTTGTGCAG CTTTTTCATCACCATTTTGCGACCAACGGGACTACTCAGCAATCTAATTT TGATGAGAAAAATATGTTTTTGACTAACCGCATGAGGTGTCTCAATTACA CGTACCAGTAGCACAAACGTGCAAAACCGACAGCCAGCGCACCTACTAGC CAGGTGGCACGTCGGCAATCGATGTCGGAATGGTTTCCTCCAGATATTAT CTCTCGAACGAGACATGAGGGTTATCTCAGCTGCACGCGGGTCGAAGATG CAGGTGATGTTTCACTTTCATACCTCTGTCTTAGATCCCTCGAGAGCTCC CTCGGGAAAGGTTTGGCATCACTTTCCTTGCAGGGTCTGCCTCTTGGCCT AGCCGAGAAGATATATAGATACGTCGCCGAGAGAGGTTCGCGTATGGCTC AGATGGAGGTTTCCCGTGCCCTGGCTCCCCTGCTGTCACGAACGGTGATA TGCCTTGATTTCACTAACTCGGAAACGGAACATCAATCGTCGTGCAGTGG TGGTAGCAGCTGTGGTTACAGTAACGGCTTCATCGGGGAATCTGCGCTGT TAGAACTTGCTAACGGGTGCGGCATGGGGTTGATCCACCTAGATCTCGGT GGTTGTCGGTTGGTGAAGAATGCTGGCGTGCTGGCGGTGCTGGCTAGGTG TCAGAATCTGTCGTCGCTTGGATTGTCAGGACTTGATGGTGTCAGCGACC AGGTAGGTTCAACTCAAACACTAGTCACGTCACCAACAGCAGCTGGAGTG TGGAGCAGCACATCGTAATTATTTTTGTGCATCACATCGGATCACTCTAG AATTTTTTGTGCTAGAACACTGCCCAGTTGTCTTTGAGTCTATCTGATGT TTTTTTTGGCCGTGCAAGCAAACGGTCATTGTGGTGCAGCTCCCCCCAGC CCAGAACTCACGCTCAGTTGTCACGATGTACTTGTAGTCTTCGGAAGAGT TTTGCGTTAGTTTATTACGAAGATCATGAGAATGTATCTAGCGGTGTGTG TAGGAGGTGTCGAAGGCGTATCCTGCAATGGATGTCCCGTTCAGATGCAT TCATCGGTTGTGCATTCTTTCGCTATTCCCTTCCCCCCCCTCCCTCAATG TCTGTTATCCTCGATGAGGAGGAGTGGCGCTGGTGATATTATTATTTGGC TCAGAATCAGGACACAAATTGCATGTCGTCGCAACTTCAATTTGTTCTTG GGTGTCTTTCCATAATCTGCAAGTTCGTGACGCAACACAAAACCGGAATC AACCCTTTTCACAAAAAACACAAGGCCTGCTATGTACAAGCGTTCTTTGC GTTCTGGCACAAAGTCTGACCATCCTGACCTTAGCGGTTTTTCAAACTTG CCAGTCGAGTCGCTGCATGGAGGGCAATACGCGACTCTGCGTAGTATCAT TGACCTATTTACTGTGGATGTGCCCTGATCCTTATCTCTCACTCGTCTCT CGTACTGAATCCCACATATGTAAAAGTAGAAGATAGGATTTGTCTTCGAC AGAGCCTTGTGGCAATTATGCGTTTCTGAGGGTGTTCACTTACATTACTT CCACCCCGCTTTTTTAAGGTCATTGCGTGCGTTTGCATCAGGCTTGTACG AGTGAGCGATTTCGATCGGGTGGTGGTGAGGTACATCTGTAGTCCACCTT TTTTTTTTCGCGGTCCTCTCTCCATGATGTATGTGGATTCATGTTATCAG AAGTTTCACTACTTCAATTGTATCTATTCCCCCAACATTTTTGTGGCCTT CAATATTTTCATTTTCACCCGTTTAGCGTTTCTGGTGGTGACCGGACTGG AACCTGTGGCCCTGTGGACTAGAATTAGGCACATTATCTCTTCGTGTCGC CAATGTGAAAGTAGAGTTTGTCCTCGACGGAGACTTGTGGGAATAATGCC TTTCTAAGGGTGTTCTCCACAATAATATATTTTATTATGTTGACTGCCTG TGTTTCCGTTCAACTTGCTTTAGTTTATCTGTGTTGGATTGCTTCTTATC CAACCTCATGCTCTTCCACCGGGTATTATGCACTTTTTAGTTCGTATTTT TCCCGTGCCCCCGTCCGTCCTACCAGGCGTTATATTTGATTCCTCATCAG ATCCCTTACCTAACGAAATTGAACTTGGCGGGCTTGAGTGGAATAACCGC GAGTGGGATCGCATACCTTTCCTTCTTGCCCTCCCTCGAGCATCTCAACC TGGCGAGGTGCTGTCAGGTGCGCCATATGACATATGATTTTCCTGGACAT ACTGCGACCCTAAGCCGGTGTTCCAGATCTTACGTCAAGATACTTCATGG CTTTGTTCTTGTGCTAGCTTTTCCGATGCCGGCATAGCGTTTTTGGCGGA TCTCCCGAGCAGGAACGCCGACCAATGCTAGCCCTTAGATTTTGACTCGG TAACTAAGAACGGCTGAGGTCATTTGTTGAACAAGCGCTGCCCACAGTAC GCAATGCTCTTGCTTTCTTCATTCGTGTGCTTGCACCCACTACGGTATCT AGGGCCCCCTCCAAGACTTGGAATTTGATTTTGACCGATTTTTCTTCATT CGGGCTGTTCTAAACGTATACGTTTTCCCCCCCTTTTTCCCGTTTTTTTT TACCATGTCGAATTTTTCGAAATATCAAAAACAAAAATGTACTATCTCTG CCTACAGTGTTCCCTTTATCCCTCTGGCGCCATGCCAAATTATTGCCGAG CATCTGAAGTTGACAATCCAGGTATCTTGGGGGGGGGGGGGTGGCATATG AAAAGGGGGAGGGGACATCTACCCGGGATCGGTGAATATTGGAAGATGGC CAATACAATGTGCATAGACGAACCACAAGTGCACTGTCGTTAGTTGTGTT GTTCTCGTCATTTCTTTTTCGCTGAACCGATACAACGGTATTTTCCTGAA AACATCCTACATCCTAGGGCAACACATCATCACCTCTGTCTCCCCCGATC TCAATCTATTTCTCCCTATCGTCGGCTGTCTGTATTTTACACTCAGACTT CTGCCTGTTCTAAATTATGACGTATACTATGTCTACCAGGCCGGGCTCTA TCTCCGTGTTGACCAACTTTTCGTGGCAGGCCCTCCTAGTTTCCTTTGTG TGACTGTCGTACTTTTCCGGCAGAGCCTCCCAAGCCGCCCGTCCGTTTCC AGGTAGCGGGGTTTCCTTCCCAGTATCTTTATATTGGCGTTGTCGTGCAA TCCCTGAAACATTTATTCATTCCCATATGTTTGGTTATGGTTCGTCTGCG GTTCATTTGGCAGTGTGGCACCAAAGGGGTTGAACCTACTTCAATTTTTT TAGATTCAGCGTGTTATGGACGTAATTGAAAAAAAGAGAAAAGAGGAGAG AGAAAAAGGGGGGGAAATACCCACAGTTAGAACGCCCCTTGTGCGGATCA ACCCTGTTGTCGTTAGTCTTCCTTTCAATAACTCACTCGTTATCATCAAC AGATCGGTGACGAGGCCGCAGCAGCGCTGGGACGTGGAAATTGCAGCGAC TCCCTGAGATGGCTCGACCTATCTGGCACCGCGACGACCGATGACGGCGT ATCATCTCTTCACCACACCAAGCTCCTGGAGTTCATCTCGCTGTCCTCTA CTACCGTCTCTCTTGCCCTCGTCAACGCCCTTGCACGAGATCTTAACCTA CCCGCCGCTCTACCAGACGCTCCCAAAATGCACGCGCGCTCTAACCGCAC GTTGCTCATGGGGTCCCGCTGGTCTCGCCGGCAATCGGGCTTTGCCCCGC GCAGACTTCCCCACTCTACTCGGAACACCGCGGGATCGCTTCGCTATGGC CACGGCACGTCCAAACGTGGCTGGGAAGGCGGACCGAGTAAACTGCTGCG CATCGGAACCGGGGTGGGGGTGGGGGACTGCCAGGTCGGCGGTAGTCGCA AGAGACCTGTATTAGCGGGGGAGCCCGTTGTGCAGAAGGTGCAGGTGGGG TTTGGGGACGGGGAAGGGGGGGATGGCGGCGGGGAAGGGGGGGATGGCGG GGGGGGAGGAAGGGTGGGATATGGTGGGAGAGAGCTCTTGGTAGAATTGG TGAACGGGATTGTTCGGCTATGGCCCGCGGTTCCTGTGCGTTGATGTTTT AGCCATGGCTGATCAAAGTGCGCCGCAGATGCTGGTTTGACTCCTGTCCA GGAAAATCTTCTAGGTTCCATAGTAGAAGTGATGTTTAGCGCAGTGAGAT GTAAATGTGGTGGGGTGTGCCTGGGGTGTTGTTGGTAATGCCCAAGCTGC GGAGAAAATGTATATAATTATCGGTATTATAGATGAGATGGCGAAGGAAA TTTGTACAGTTGAGGCGAAACATTTTGGCCTGTTTAGTGGGATTTTGGTT AAATTCATTACAATGGTTTTGTTCAACAGACTGTCATGAAACCCGCGTGC ATGGCTGGACGGGCTCTTCAGTCGTCCTTGTTGCGTGCTTCTTTTCAACG TGGTGTCAAAAAGGACTCGCGAACGCGTGTGGAGGTTTCGAGGAAAGCGC CAATTACGGCTGCGGGGAGGAATGTGTCAGCTGATGAGCACACGATAGTC AAGGGGCATGGGAAAAGGTGTACATTTAGCAGGTTTGAACCAGGCAGAAT CAGATCAGACGGTATCTGTTTGCGCTCTTATTTTTTTACTGAAGTCACGG TGTTGCGGTTATTAGCACCCACAGTAACAGGGTTGCCTTCGAAGGAAATG ACCAAGCGGTTATCCCGGGCCCATTGCCAAGTTGTTTGCAACATGTCACG AATCGGATTAAGTTTTTTTCTGTCAATCGTTGTGTATTTGTAGTATTTCA AATTTAGTGCCTAAGAGCTCGAGAGATCCGGAAGTACATTGCAGGCTTTA CGTGACCACGAGGAAAGCTCTTGGGCCACCAGCCGTTGATAAAGAGTCCA CGGCGTTGGGTACTCTTTATACTCCAAAGCACAAGTAACGAGAGGCAGCA GCTGCCGATCCGGCGTCTGTGGCTGCAAAAGCGTGTTATTGCAGTACAAC GGGATTCCTGATATAGCGGGGTCGAAATCGCTTTTCGCGGTTGCAACGTG ATATAGTAGGGTATCCCACTTTTTAGGGACTTTCCTCAAAAGCGCAATCC CGGGTCTGACAATCGGGATATTAATAAAAAACGGCACGACTACGCTGTCA TTCGAAGATTGTTGAAATATATGAGGCGCATTCAAAGTTCAAAATATGCG GCTGTAGACTTGAGCTTGCAGTGGCTCAGCCGTGCGCATCAGCAGCACAC GTGCAATGTGCAGCAGGAGAGCTGTGTATCATTCAATTAGCCACACCAAA AGCCCCCAATGCCCACGTGTGGCGCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1618:4052..17477+

>mRNA_H-paniculata_contig1618.3561.1 ID=mRNA_H-paniculata_contig1618.3561.1|Name=mRNA_H-paniculata_contig1618.3561.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2628bp|location=Sequence derived from alignment at H-paniculata_contig1618:4052..17477+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGGAATGGTTTCCTCCAGATATTATCTCTCGAACGAGACATGAGGG
TTATCTCAGCTGCACGCGGGTCGAAGATGCAGGTGATGTTTCACTTTCAT
ACCTCTGTCTTAGATCCCTCGAGAGCTCCCTCGGGAAAGGTTTGGCATCA
CTTTCCTTGCAGGGTCTGCCTCTTGGCCTAGCCGAGAAGATATATAGATA
CGTCGCCGAGAGAGGTTCGCGTATGGCTCAGATGGAGGTTTCCCGTGCCC
TGGCTCCCCTGCTGTCACGAACGGTGATATGCCTTGATTTCACTAACTCG
GAAACGGAACATCAATCGTCGTGCAGTGGTGGTAGCAGCTGTGGTTACAG
TAACGGCTTCATCGGGGAATCTGCGCTGTTAGAACTTGCTAACGGGTGCG
GCATGGGGTTGATCCACCTAGATCTCGGTGGTTGTCGGTTGGTGAAGAAT
GCTGGCGTGCTGGCGGTGCTGGCTAGGTGTCAGAATCTGTCGTCGCTTGG
ATTGTCAGGACTTGATGGTGTCAGCGACCAGATGTCGGAATGGTTTCCTC
CAGATATTATCTCTCGAACGAGACATGAGGGTTATCTCAGCTGCACGCGG
GTCGAAGATGCAGGTGATGTTTCACTTTCATACCTCTGTCTTAGATCCCT
CGAGAGCTCCCTCGGGAAAGGTTTGGCATCACTTTCCTTGCAGGGTCTGC
CTCTTGGCCTAGCCGAGAAGATATATAGATACGTCGCCGAGAGAGGTTCG
CGTATGGCTCAGATGGAGGTTTCCCGTGCCCTGGCTCCCCTGCTGTCACG
AACGGTGATATGCCTTGATTTCACTAACTCGGAAACGGAACATCAATCGT
CGTGCAGTGGTGGTAGCAGCTGTGGTTACAGTAACGGCTTCATCGGGGAA
TCTGCGCTGTTAGAACTTGCTAACGGGTGCGGCATGGGGTTGATCCACCT
AGATCTCGGTGGTTGTCGGTTGGTGAAGAATGCTGGCGTGCTGGCGGTGC
TGGCTAGGTGTCAGAATCTGTCGTCGCTTGGATTGTCAGGACTTGATGGT
GTCAGCGACCAGGCGTTATATTTGATTCCTCATCAGATCCCTTACCTAAC
GAAATTGAACTTGGCGGGCTTGAGTGGAATAACCGCGAGTGGGATCGCAT
ACCTTTCCTTCTTGCCCTCCCTCGAGCATCTCAACCTGGCGAGGTGCTGT
CAGGCGTTATATTTGATTCCTCATCAGATCCCTTACCTAACGAAATTGAA
CTTGGCGGGCTTGAGTGGAATAACCGCGAGTGGGATCGCATACCTTTCCT
TCTTGCCCTCCCTCGAGCATCTCAACCTGGCGAGGTGCTGTCAGATCGGT
GACGAGGCCGCAGCAGCGCTGGGACGTGGAAATTGCAGCGACTCCCTGAG
ATGGCTCGACCTATCTGGCACCGCGACGACCGATGACGGCGTATCATCTC
TTCACCACACCAAGCTCCTGGAGTTCATCTCGCTGTCCTCTACTACCGTC
TCTCTTGCCCTCGTCAACGCCCTTGCACGAGATCTTAACCTACCCGCCGC
TCTACCAGACGCTCCCAAAATGCACGCGCGCTCTAACCGCACGTTGCTCA
TGGGGTCCCGCTGGTCTCGCCGGCAATCGGGCTTTGCCCCGCGCAGACTT
CCCCACTCTACTCGGAACACCGCGGGATCGCTTCGCTATGGCCACGGCAC
GTCCAAACGTGGCTGGGAAGGCGGACCGAGTAAACTGCTGCGCATCGGAA
CCGGGGTGGGGGTGGGGGACTGCCAGGTCGGCGGTAGTCGCAAGAGACCT
GTATTAGCGGGGGAGCCCGTTGTGCAGAAGGTGCAGGTGGGGTTTGGGGA
CGGGGAAGGGGGGGATGGCGGCGGGGAAGGGGGGGATGGCGGGGGGGGAG
GAAGGGTGGGATATGGTGGGAGAGAGCTCTTGGTAGAATTGGTGAACGGG
ATTGTTCGGCTATGGCCCGCGGTTCCTGTGCGTTGAATCGGTGACGAGGC
CGCAGCAGCGCTGGGACGTGGAAATTGCAGCGACTCCCTGAGATGGCTCG
ACCTATCTGGCACCGCGACGACCGATGACGGCGTATCATCTCTTCACCAC
ACCAAGCTCCTGGAGTTCATCTCGCTGTCCTCTACTACCGTCTCTCTTGC
CCTCGTCAACGCCCTTGCACGAGATCTTAACCTACCCGCCGCTCTACCAG
ACGCTCCCAAAATGCACGCGCGCTCTAACCGCACGTTGCTCATGGGGTCC
CGCTGGTCTCGCCGGCAATCGGGCTTTGCCCCGCGCAGACTTCCCCACTC
TACTCGGAACACCGCGGGATCGCTTCGCTATGGCCACGGCACGTCCAAAC
GTGGCTGGGAAGGCGGACCGAGTAAACTGCTGCGCATCGGAACCGGGGTG
GGGGTGGGGGACTGCCAGGTCGGCGGTAGTCGCAAGAGACCTGTATTAGC
GGGGGAGCCCGTTGTGCAGAAGGTGCAGGTGGGGTTTGGGGACGGGGAAG
GGGGGGATGGCGGCGGGGAAGGGGGGGATGGCGGGGGGGGAGGAAGGGTG
GGATATGGTGGGAGAGAGCTCTTGGTAGAATTGGTGAACGGGATTGTTCG
GCTATGGCCCGCGGTTCCTGTGCGTTGA
back to top