mRNA_H-paniculata_contig1054.356.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1054.356.1 vs. uniprot
Match: D7G3I4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3I4_ECTSI) HSP 1 Score: 289 bits (739), Expect = 1.340e-74 Identity = 276/740 (37.30%), Postives = 372/740 (50.27%), Query Frame = 1
Query: 4 DRASLESKTRMSFHQKQGKFAGGVKPTDPT-RLDRLRKDALEDFNRATVERPRSVHQMAAMFASSAPADRLESKSAVGNHPADDGEGW------KAVGGRVGPTPSRFKLGGVQEMEGGHVDPSLQ-ADESVQQVRDSGGDVSGSGDSVGRGMSFSSVGSSVCTFNEFESVTSGNSVYAASNQGYNRSSSPTRQGRGSKFDSFANPSTTDLRALDLKQMHLNEARALASNRSANVKDIASAFRGESRPENVEVFQKRHAQQEAAYRFKVHEGKETLKKTSQGTDAMYDFVLKLNLATTEGKERFMRRWAVGRISNGESTAPAEGLKFLHSLGINVANKTPTKPAVA-------AVATQDIVVS----DQKSETGRASTTSSSRDIS-IPNTPVRGRRISRAWNGFGSPRARPSASGTESGGGSDTESSAWEAALSRAVVGLVKVDADACAPQFEKPRSTRRRRSGSEPRRSTPTIRQTAETCRPTRSTAFWGA------TPIKSS-------------------KDEHDLDGIGR------CSMSLSPSTTPPPRLGLPQKSSHDEFRSMGRQSLERRMSDSSDEAPSDAESSTITTNKRRLRLSI---------SRAGT---------SPSRFSLSPSRRSIAARGLPTKGEQQAAQDAITALSKVVEWESPSNENEPLGLLQLPDRFGEGDEMMSITSFSGHGTAVDGISSCSDSLHGDRVSMLPGRAFTLDGSFPAL 2016
DRAS+ SKT +SFHQK+G+FA G+ + + +LDR+RK+ALEDF RAT +R +SVHQMAAM+AS++ +D+ S +A G G+ W K +GG V S GG + +E ++ + ++E + +R+ G+ E +S++ + S S P + + + F+ ST+D+RA DLK+ HL+EAR L SNR+ VKDIAS F+GESRPENVEVF KRH +QEA YR KVH+GKETLKKTSQGTDAMY+FVLKLNLATTEGKERFM++WA+GRI+NGES P EG KFL SLGI+V P P A + + +DI + ++++ TG + ++SR NTP R G G G G + ES+AWE A+S+AV +VKVDADACAP+ RRRRSGSEPRR+ + + +TCR ++ F+ + +K++ +DE D G G +SLSP+ + L L K E R S + D +S + + R+ LS RAG SP RF+LSP RRS P A + A ALS V W++ P GL QLP R G G DGIS CS S +R P F + G L
Sbjct: 26 DRASIGSKT-LSFHQKKGRFAAGIGHSPRSDQLDRIRKNALEDFTRATHKRSQSVHQMAAMYASTS-SDK--SSNADGIKQQQQGDAWLPGGNTKGLGGLVSAFASD---GGGRSLESVALEAQGELSEEEIPAIREEAGE-------------------------EPQSLSPPPKLSERS------LSQPNPE--ATNYSVFS--STSDVRARDLKKTHLDEARNLTSNRARKVKDIASGFKGESRPENVEVFHKRHKEQEADYRHKVHQGKETLKKTSQGTDAMYNFVLKLNLATTEGKERFMKKWAIGRIANGESINPREGWKFLKSLGIDVPK--PRSPNAATDFARPGSPSEKDITTAQSAPNKQTTTGMITPAAASRGRGRTGNTPATAGGYGRPGGGGG---------GFAVGDAAKQESAAWEVAMSQAVGAVVKVDADACAPKLG---LERRRRSGSEPRRTPSDLPRAPDTCRAPKTKPFFXXXXXXXXSDVKAAPPSPLPPAPMSDNGDCLLEQDEADDFGDGGSRGFSGAGLSLSPAGSVTGGLALNMKLWRQEGEGGDGVGGRRPQSQAFDSRGPSLDSLRASVSSSRMSLSPCRSLSPPRGGRAGVRISLNPRYESPGRFNLSPGRRSNGRS--PLTPTAMADRSAAAALSAKVSWDATGPPPAPEGL-QLPTRLFVG---------GGEENKGDGIS-CSGSE--ERFDGNPAEGFDMGGKEALL 694
BLAST of mRNA_H-paniculata_contig1054.356.1 vs. uniprot
Match: A0A6H5KR12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR12_9PHAE) HSP 1 Score: 271 bits (693), Expect = 3.450e-69 Identity = 282/793 (35.56%), Postives = 366/793 (46.15%), Query Frame = 1
Query: 4 DRASLESKTRMSFHQKQGKFAGGV-KPTDPTRLDRLRKDALEDFNRATVERPRSVHQMAAMFASSAPADRLESKSAVGNHPADDGEGWKAVGGRVGPTPSRFKLGGVQEMEGGHVDPSLQADESVQQVRDSGGDVSGSGDSV-----GRGMSFSSVGSSVCTFNEFESVTSGNSVYAASNQGYNRSSSP---------TRQGRGSKFDSFANP----------------------STTDLRALDLKQMHLNEARALASNRSANVKDIASAFRGESR---------------------------------PENVEVFQKRHAQQEAAYRFKVHEGKETLKKTSQGTDAMYDFVLKLNLATTEGKERFMRRWAVGRISNGESTAPAEGLKFLHSLGINVANKTPTKPAVAAVATQDIVVSDQKSETGRASTTS-SSRDISIPNTPVRGR----RISRAWNGFGSPRARPSASGTESGGGSDTESSAWEAALSRAVVGLVKVDADACAPQFEKPRSTRRRRSGSEPRRSTPTIRQTAETCRPTRSTAFWGA----------------------TPIKSSKD----EHDLD--------GIGRCSMSLSPSTTPPPRLGLPQKSSHDE----------------FRSMGRQ--SLERRMSDSSDEAPSDAESSTITTNKRRLRLSISRAGTSPSRFSLSPSRRSIAARGLPTKGEQQAAQDAITALSKVVEWESPSNENEPLGLLQLPDRFGEGDEMMSITSFSGHGTAVDGISSCSDSLHGDRVSMLPGRAFTLDG 2001
DRAS+ SKT +SFHQK+G+FA G+ + +LDR+RKDALEDF RAT +R +SVHQMAAM+AS++ +D+ S +A G G+ W G F+ S ++ S + +GG+ G G V G S+ + S+ + S+ S NQ + S P R+G G S + P S +D+RA DLK+ HL+EAR L SNR+ VKDIAS F+GESR PENVEVF KRH +QEA YR KVH+GKETLKKTSQGTDAMY+FVLKLNLATTEGKERFM++WA+GRI+NGES P EG KFL SLGI+V P P AA S++ S T ++ TT ++ ++ P RGR G+G P G G + ES+AWE A+S+AV LVKVDADACAP+ RRRRSGSEPRR+ + + +TCR ++ +F P+ + D E + D G +SLSP+ + L L K E F S G SL +S S S + +R+S++ SP RF LSP RRS P A + A ALS V W++ P GL QLP R G SG DG+S CS S +R P F + G
Sbjct: 26 DRASIGSKT-LSFHQKKGRFAAGIGRSPRSDQLDRIRKDALEDFTRATHKRSQSVHQMAAMYASTS-SDK--SSNADGIKQQQQGDAWLPEG--------AFR--------------STGSNISNNSLSMAGGNTKGLGGLVSAFASGGSGSYQPLSLSMRRYQPPLSL----SFLIDYNQSHRPYSFPLKSEEEVVAVREGAGEGPQSLSPPPKLSEQSLSQPNPEATNYSVFSSNSDVRARDLKKTHLDEARNLTSNRARKVKDIASGFKGESRQATAVNTSTAGCHTSEPRTPVPDPGRNQLLFSEPENVEVFHKRHKEQEADYRHKVHQGKETLKKTSQGTDAMYNFVLKLNLATTEGKERFMKKWAIGRIANGESINPREGWKFLKSLGIDVPK--PRSPNAAADFASPGSPSEKDSTTAQSGTTKQTTTGMTTPAAASRGRGRTGNTPATAGGYGRPGG--GGGGFAVGDAAKQESAAWEVAMSQAVGALVKVDADACAPKLG---LERRRRSGSEPRRTPSNLPRAPDTCRAPKTKSFXXXXXXXXXXXXXDVKAAPPSPLPPAPMSDNGDRLLEEDEADDFGDGGSRGFSGAGLSLSPAGSVTGGLALNMKLWRQEGEGGDGVGGRRPQSQAFGSRGPSLDSLRASISSSRMSLSPCRSLSPPRGGRAGVRISLNPRYQSPGRFDLSPGRRSNGRS--PLTPMAMADRSAAAALSAKVSWDATGAPPAPEGL-QLPSRLFVG---------SGEVGKGDGLS-CSGSE--ERFDGNPAEGFDMGG 766 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1054.356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1054.356.1 >prot_H-paniculata_contig1054.356.1 ID=prot_H-paniculata_contig1054.356.1|Name=mRNA_H-paniculata_contig1054.356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1936bp MSFHQKQGKFAGGVKPTDPTRLDRLRKDALEDFNRATVERPRSVHQMAAMback to top mRNA from alignment at H-paniculata_contig1054:8861..26028- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1054.356.1 ID=mRNA_H-paniculata_contig1054.356.1|Name=mRNA_H-paniculata_contig1054.356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=17168bp|location=Sequence derived from alignment at H-paniculata_contig1054:8861..26028- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1054:8861..26028- >mRNA_H-paniculata_contig1054.356.1 ID=mRNA_H-paniculata_contig1054.356.1|Name=mRNA_H-paniculata_contig1054.356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=11616bp|location=Sequence derived from alignment at H-paniculata_contig1054:8861..26028- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |