mRNA_H-paniculata_contig10539.353.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10539.353.1
Unique NamemRNA_H-paniculata_contig10539.353.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10539.353.1 vs. uniprot
Match: A0A6H5KNU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU8_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 6.070e-30
Identity = 136/377 (36.07%), Postives = 180/377 (47.75%), Query Frame = 1 
Query:   73 HPLCGIENGVAE-LVVEVEKSKDTSRDLKAEFNKLAAAKKQLMNDILRLERDKEKLTEKHIGDLARIREKLEAEAREGKRQLKEELDKGHDASMNQLRQDLRTKIEPLETETRRLRREVMRAQQADSLTASKSNGKNAGGKRGRFGK---RGNGAAEPPAPAPAGDVVSMISMPTSMSFWRGLTDAFAPQDLLFNTGDDG---GVREGGAVGRDVEDDKVPPPALLVLAAVPMFYLLTRWRANRQRGKEGNAAVV--NDDGLVTDGETAS------RHGWKD------------ADTDVSGENIHILQKHPTSFRLHQRRSVSCSPTKRDNANNDRRPAVSLSLSP----PRSLEN--LISPSVSLARNASLSRRNS 1104
            HPLC  E G  + LV E  ++K+    L+AE   L   K  L  DI RLERDK  LTE+H+  + R+R  L+ +AR+GKR+L+ EL+KGH  SM++LR  L+ + E L  ET+RLR ++ RA++A S              R + GK   R      PPA  PA        +P    FW  LT AF P+DLL     DG   GV +GG       +  VPPPALLVLAAVP+F  + R R  R    +   ++   N +G  TD E  S         W+              D  V                   RRS+S SP K    N     ++ L+LSP    P+  E   L+SPSV ++RNAS  RR S
Sbjct:   90 HPLCSGEPGKIDGLVSEAREAKEAEGALRAEAAILRERKAVLDADIRRLERDKADLTEEHLAQMERLRRDLQEDARDGKRRLESELEKGHAKSMDRLRLTLKAEAESLAGETKRLREDLQRAREAKSAAXXXXXXXXXXSPRTKGGKSSARSIARDTPPAAVPA--------LPAG--FWNSLTSAFTPRDLL-----DGVAVGVGDGG-------NGAVPPPALLVLAAVPLFCFIKRRRIQRLVADQEGTSISGSNYEGQTTDVEDQSDEEEEVESAWRGKEAVGDEEKKEKVDDGVRDXXXXXXXXXXXXXTEQLRRSLSSSPMKLRTGNTPGS-SLRLNLSPRPQGPQFSEPEVLVSPSVVMSRNASSGRRQS 443
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BLAST of mRNA_H-paniculata_contig10539.353.1 vs. uniprot
Match: D7G1T9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T9_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 6.880e-18
Identity = 110/316 (34.81%), Postives = 146/316 (46.20%), Query Frame = 1 
Query:  259 LARIREKLEAEAREGKRQLKEELDKGHDASMNQLRQDLRTKIEPLETETRRLRREVMRAQQADSLTASKSNGKNAG--GKRGRFGKRGNGAAEPPAPAPAGDVVSMISMPTSMSFWRGLTDAFAPQDLLFNTGDDG---GVREGGAVGRDVEDDKVPPPALLVLAAVPMFYLLTRWRANRQ-RGKEGNAAVVNDD-GLVTDGETAS-----------RHGWKDADTDVSGENIHILQKHPTSFRLHQ----------RRSVSCSPTKRDNANNDRRPAVSLSLSP----PRSLEN--LISPSVSLARNASLSRRNS 1104
            + R+R  L+ +AR+GKR+L+ EL+KGH  SM++LR  L+ + E L  ET+RLR ++ RA++A S               K G+   R      P A  PA        +P    FW  LT AF P+DLL     DG   GV +GG       +  VPPPALLVLAAVP+F  L RWR  R    +EG +   +DD G  TD E  S              W+  +     E                          RRS+S SP K     N    ++ L+LSP    P+  E   L+SPSV ++RNAS  RR S
Sbjct:    1 MERLRRDLQEDARDGKRRLESELEKGHAKSMDRLRLTLKAEAESLAGETKRLREDLQRAREAKSAXXXXXXXXXXXPRAKGGKSSARSIARDTPAAAVPA--------LPAG--FWNSLTSAFTPRDLL-----DGVAVGVGDGG-------NGAVPPPALLVLAAVPLFCFLKRWRIQRLVADQEGTSISGSDDEGQTTDVEAQSDKXXXXXXXXVEGAWRGKEAVGDEEXXXXXXXXXXXXXXXXXXXXXXTDQLRRSLSSSPMKL-RTGNPPGSSLRLNLSPRPQGPQITEPEVLVSPSVVMSRNASSGRRQS 293
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10539.353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KNU8_9PHAE6.070e-3036.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1T9_ECTSI6.880e-1834.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10539contigH-paniculata_contig10539:3416..5644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1211
Cds size1209
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928757.163056-CDS-H-paniculata_contig10539:3415..42031622928757.163056-CDS-H-paniculata_contig10539:3415..4203Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10539 3416..4203 +
1691480607.6340706-CDS-H-paniculata_contig10539:3415..42031691480607.6340706-CDS-H-paniculata_contig10539:3415..4203Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10539 3416..4203 +
1622928757.175222-CDS-H-paniculata_contig10539:5221..56421622928757.175222-CDS-H-paniculata_contig10539:5221..5642Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10539 5222..5642 +
1691480607.6433022-CDS-H-paniculata_contig10539:5221..56421691480607.6433022-CDS-H-paniculata_contig10539:5221..5642Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10539 5222..5642 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10539.353.1prot_H-paniculata_contig10539.353.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10539 3416..5642 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10539.353.1

>prot_H-paniculata_contig10539.353.1 ID=prot_H-paniculata_contig10539.353.1|Name=mRNA_H-paniculata_contig10539.353.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=403bp
EETEGVKDGGSGSESRADGGIDVQHPLCGIENGVAELVVEVEKSKDTSRD
LKAEFNKLAAAKKQLMNDILRLERDKEKLTEKHIGDLARIREKLEAEARE
GKRQLKEELDKGHDASMNQLRQDLRTKIEPLETETRRLRREVMRAQQADS
LTASKSNGKNAGGKRGRFGKRGNGAAEPPAPAPAGDVVSMISMPTSMSFW
RGLTDAFAPQDLLFNTGDDGGVREGGAVGRDVEDDKVPPPALLVLAAVPM
FYLLTRWRANRQRGKEGNAAVVNDDGLVTDGETASRHGWKDADTDVSGEN
IHILQKHPTSFRLHQRRSVSCSPTKRDNANNDRRPAVSLSLSPPRSLENL
ISPSVSLARNASLSRRNSAAAGKPTSTFAPSASKLPPNTESLISPHESKC
FAA
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mRNA from alignment at H-paniculata_contig10539:3416..5644+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10539.353.1 ID=mRNA_H-paniculata_contig10539.353.1|Name=mRNA_H-paniculata_contig10539.353.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2229bp|location=Sequence derived from alignment at H-paniculata_contig10539:3416..5644+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGAAACTGAGGGAGTTAAAGATGGAGGAAGTGGCAGCGAGAGTCGTGC
GGATGGTGGCATTGACGTCCAGCACCCGCTCTGCGGGATCGAGAACGGGG
TGGCGGAGTTGGTTGTCGAGGTGGAAAAATCGAAGGACACCAGCCGCGAC
CTGAAGGCGGAGTTCAATAAGCTAGCGGCGGCCAAGAAGCAGCTCATGAA
CGACATCCTAAGGCTCGAGCGGGACAAGGAGAAGCTCACGGAGAAGCACA
TCGGGGATCTCGCGCGCATTCGTGAGAAGTTGGAGGCCGAAGCGCGCGAG
GGCAAGCGCCAGCTGAAAGAGGAGCTCGACAAGGGCCACGACGCGTCCAT
GAACCAACTGCGCCAAGACCTCCGCACCAAGATCGAACCCCTTGAGACGG
AGACGAGGAGACTGCGGCGGGAGGTGATGAGGGCCCAGCAAGCCGATAGC
CTGACGGCGAGCAAGAGCAATGGCAAAAATGCTGGTGGCAAGAGGGGAAG
GTTCGGCAAGAGGGGAAATGGCGCCGCCGAACCCCCAGCTCCTGCACCTG
CCGGCGATGTTGTATCGATGATATCCATGCCCACTTCCATGTCGTTCTGG
CGGGGACTTACGGACGCCTTCGCGCCCCAGGATCTTCTGTTCAACACCGG
GGACGATGGCGGGGTGCGCGAGGGCGGAGCAGTGGGGAGGGACGTCGAGG
ATGATAAGGTGCCCCCACCGGCGCTGCTGGTGCTTGCGGCAGTGCCCATG
TTCTACCTTCTTACGAGGTGGCGTGCTAACCGTCAGCGGTAAGATGTATG
TATGCGTGTGTGTTTCTGTGTGTGTGACTTTTTCGTATGCAGGCGAAAGT
AGAAGATCGTGCTTGCATTTTGTTTGTGTGTGCGGGGGTCGAGTTTGGAG
ATTGATATTGCGAAGGTCAGATCTGGTTCGCAGTTGCGCGTCATGGTTGG
ATCTTGGTGCTGTGATGTGGCCGGGGGGCCTGTGGGCCGGCGAATTTCAT
CGACAGTATATACAGACAGCAATATTTTAACGTGTTGAAGCGACTAGCTG
TAACTAATTCTGATCGTAATTTTGACTGTTTCCTGTACATGCATGCTGGG
TCAACGACAGGTTTCATGTGTTGCGATCACATCACATGTATGTACAATCT
CGATAGAGAAATTTGCAATTTTGAGGATGGCTCACGACTGTTGCCTGGTG
TCCGAATGTTTACTCTCTCGTATGTTACTTTTTCCCTCACCCCGAGAGCA
AAGGGATCGGCAAGAAACCGAAACGGTACATCTTCATTTGCCGCAAAACA
ATATAGCCAATGGTCATACAAACAACATGAACTGCGACTCCGTAAAAGCA
TCTATAAAAGATTGAAAGAAAACTTCAAAACCCAGGGGCACCGCACAACT
ATGGCCCAGAACGTTTGTACAGAGTAAACCATGCTATCCCAGCAAGGCGC
TTTTGTATAGCCCTCGAAAACACCTCTCGTTCACCTCAAGTTCGAGCTTG
AAACTCGTGTTACACCGACGGCCAGTGCGAACAAGAAATAAAAAAATCGG
CTTGTTTGTATCTTGCGCTCTTCACCCCCTGTCCCAGAGCTGCTGCATCC
AACATCATGTGAGTTCCCTAATCACTCATCAGATAGTAATGCCAATTCAC
TTTCGATCCTGATTACAAACGCAGACGTTCTCAATGATCGTATAGTGCCA
TCTACCATCTACTGTACCAATTTAAAACTTGAAACAGCCATTGATCTATC
CCTACCGACCACCTATTTGATCTTTATTATCGCCGCTCGTACATTAAATT
ATCTAGGGGCAAGGAAGGCAACGCGGCTGTGGTCAATGATGACGGACTGG
TGACAGATGGGGAGACCGCGTCCCGGCACGGCTGGAAGGACGCCGACACC
GATGTCAGCGGGGAAAACATTCACATCCTCCAGAAGCATCCTACTTCCTT
CCGACTTCACCAGCGCCGTTCCGTATCGTGTTCCCCGACGAAGCGGGACA
ACGCAAACAACGACCGCAGACCGGCTGTCAGTCTGTCCCTCTCTCCGCCC
CGCAGCCTTGAAAACCTTATAAGTCCCTCAGTATCGTTGGCGAGAAACGC
CTCGCTATCCCGCCGCAATAGCGCCGCGGCCGGGAAGCCTACCTCCACCT
TCGCCCCTAGTGCATCGAAGTTACCACCCAACACCGAATCGCTCATATCA
CCCCATGAGTCCAAATGCTTCGCGGCAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig10539:3416..5644+

>mRNA_H-paniculata_contig10539.353.1 ID=mRNA_H-paniculata_contig10539.353.1|Name=mRNA_H-paniculata_contig10539.353.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2418bp|location=Sequence derived from alignment at H-paniculata_contig10539:3416..5644+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGAAACTGAGGGAGTTAAAGATGGAGGAAGTGGCAGCGAGAGTCGTGC
GGATGGTGGCATTGACGTCCAGCACCCGCTCTGCGGGATCGAGAACGGGG
TGGCGGAGTTGGTTGTCGAGGTGGAAAAATCGAAGGACACCAGCCGCGAC
CTGAAGGCGGAGTTCAATAAGCTAGCGGCGGCCAAGAAGCAGCTCATGAA
CGACATCCTAAGGCTCGAGCGGGACAAGGAGAAGCTCACGGAGAAGCACA
TCGGGGATCTCGCGCGCATTCGTGAGAAGTTGGAGGCCGAAGCGCGCGAG
GGCAAGCGCCAGCTGAAAGAGGAGCTCGACAAGGGCCACGACGCGTCCAT
GAACCAACTGCGCCAAGACCTCCGCACCAAGATCGAACCCCTTGAGACGG
AGACGAGGAGACTGCGGCGGGAGGTGATGAGGGCCCAGCAAGCCGATAGC
CTGACGGCGAGCAAGAGCAATGGCAAAAATGCTGGTGGCAAGAGGGGAAG
GTTCGGCAAGAGGGGAAATGGCGCCGCCGAACCCCCAGCTCCTGCACCTG
CCGGCGATGTTGTATCGATGATATCCATGCCCACTTCCATGTCGTTCTGG
CGGGGACTTACGGACGCCTTCGCGCCCCAGGATCTTCTGTTCAACACCGG
GGACGATGGCGGGGTGCGCGAGGGCGGAGCAGTGGGGAGGGACGTCGAGG
ATGATAAGGTGCCCCCACCGGCGCTGCTGGTGCTTGCGGCAGTGCCCATG
TTCTACCTTCTTACGAGGTGGCGTGCTAACCGTCAGCGGAGGAAACTGAG
GGAGTTAAAGATGGAGGAAGTGGCAGCGAGAGTCGTGCGGATGGTGGCAT
TGACGTCCAGCACCCGCTCTGCGGGATCGAGAACGGGGTGGCGGAGTTGG
TTGTCGAGGTGGAAAAATCGAAGGACACCAGCCGCGACCTGAAGGCGGAG
TTCAATAAGCTAGCGGCGGCCAAGAAGCAGCTCATGAACGACATCCTAAG
GCTCGAGCGGGACAAGGAGAAGCTCACGGAGAAGCACATCGGGGATCTCG
CGCGCATTCGTGAGAAGTTGGAGGCCGAAGCGCGCGAGGGCAAGCGCCAG
CTGAAAGAGGAGCTCGACAAGGGCCACGACGCGTCCATGAACCAACTGCG
CCAAGACCTCCGCACCAAGATCGAACCCCTTGAGACGGAGACGAGGAGAC
TGCGGCGGGAGGTGATGAGGGCCCAGCAAGCCGATAGCCTGACGGCGAGC
AAGAGCAATGGCAAAAATGCTGGTGGCAAGAGGGGAAGGTTCGGCAAGAG
GGGAAATGGCGCCGCCGAACCCCCAGCTCCTGCACCTGCCGGCGATGTTG
TATCGATGATATCCATGCCCACTTCCATGTCGTTCTGGCGGGGACTTACG
GACGCCTTCGCGCCCCAGGATCTTCTGTTCAACACCGGGGACGATGGCGG
GGTGCGCGAGGGCGGAGCAGTGGGGAGGGACGTCGAGGATGATAAGGTGC
CCCCACCGGCGCTGCTGGTGCTTGCGGCAGTGCCCATGTTCTACCTTCTT
ACGAGGTGGCGTGCTAACCGTCAGCGGGGCAAGGAAGGCAACGCGGCTGT
GGTCAATGATGACGGACTGGTGACAGATGGGGAGACCGCGTCCCGGCACG
GCTGGAAGGACGCCGACACCGATGTCAGCGGGGAAAACATTCACATCCTC
CAGAAGCATCCTACTTCCTTCCGACTTCACCAGCGCCGTTCCGTATCGTG
TTCCCCGACGAAGCGGGACAACGCAAACAACGACCGCAGACCGGCTGTCA
GTCTGTCCCTCTCTCCGCCCCGCAGCCTTGAAAACCTTATAAGTCCCTCA
GTATCGTTGGCGAGAAACGCCTCGCTATCCCGCCGCAATAGCGCCGCGGC
CGGGAAGCCTACCTCCACCTTCGCCCCTAGTGCATCGAAGTTACCACCCA
ACACCGAATCGCTCATATCACCCCATGAGTCCAAATGCTTCGCGGCAGGG
CAAGGAAGGCAACGCGGCTGTGGTCAATGATGACGGACTGGTGACAGATG
GGGAGACCGCGTCCCGGCACGGCTGGAAGGACGCCGACACCGATGTCAGC
GGGGAAAACATTCACATCCTCCAGAAGCATCCTACTTCCTTCCGACTTCA
CCAGCGCCGTTCCGTATCGTGTTCCCCGACGAAGCGGGACAACGCAAACA
ACGACCGCAGACCGGCTGTCAGTCTGTCCCTCTCTCCGCCCCGCAGCCTT
GAAAACCTTATAAGTCCCTCAGTATCGTTGGCGAGAAACGCCTCGCTATC
CCGCCGCAATAGCGCCGCGGCCGGGAAGCCTACCTCCACCTTCGCCCCTA
GTGCATCGAAGTTACCACCCAACACCGAATCGCTCATATCACCCCATGAG
TCCAAATGCTTCGCGGCA
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