mRNA_H-paniculata_contig10539.352.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10539.352.1
Unique NamemRNA_H-paniculata_contig10539.352.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10539.352.1 vs. uniprot
Match: D7G1T8_ECTSI (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T8_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 1.560e-21
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    1 QVKILPTVICFIDGIAVHHIIGFEGLTAGLAADKLDEWPVSALARELALAKVL 159
            QVKILPTVICFIDG+AVH+IIGF+GLTAGL  DKLDEWP+S LARELALAK +
Sbjct:  228 QVKILPTVICFIDGVAVHNIIGFDGLTAGLPPDKLDEWPLSNLARELALAKAI 280
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BLAST of mRNA_H-paniculata_contig10539.352.1 vs. uniprot
Match: A0A482RU92_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RU92_9ARCH)

HSP 1 Score: 58.5 bits (140), Expect = 1.380e-8
Identity = 25/46 (54.35%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    4 VKILPTVICFIDGIAVHHIIGFEGLTAGLAADKLDEWPVSALAREL 141
            ++ +PTV+CF+DGIA   ++GFEGLT GL     DEWP   LAR L
Sbjct:  244 IRTMPTVVCFVDGIAQDKVVGFEGLTEGLEEGHEDEWPTVRLARLL 289
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BLAST of mRNA_H-paniculata_contig10539.352.1 vs. uniprot
Match: A0A835YQ77_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ77_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 4.330e-7
Identity = 27/53 (50.94%), Postives = 33/53 (62.26%), Query Frame = 1 
Query:    1 QVKILPTVICFIDGIAVHHIIGFEGLTAGLAADKLDEWPVSALARELALAKVL 159
            QV++LP V+ F DGI+V  I GFEGL         DEWP   LA+ LALAK +
Sbjct:  231 QVRVLPCVVIFRDGISVAQIQGFEGLNEEQEKGTEDEWPTGNLAKRLALAKAI 283
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BLAST of mRNA_H-paniculata_contig10539.352.1 vs. uniprot
Match: J9IP16_9SPIT (Thioredoxin domain-containing protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IP16_9SPIT)

HSP 1 Score: 52.0 bits (123), Expect = 2.460e-6
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:    1 QVKILPTVICFIDGIAVHHIIGFEGLTAGLAADKLDEWPVSALARELALAKVL 159
            QV++LPT+ICFIDG+AV  ++GFE L A       D++P+ AL R L  + VL
Sbjct:  177 QVQVLPTIICFIDGVAVDRVVGFEDLGAK------DDFPMIALTRRLIRSGVL 223
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BLAST of mRNA_H-paniculata_contig10539.352.1 vs. uniprot
Match: F0YBM5_AURAN (Thioredoxin domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBM5_AURAN)

HSP 1 Score: 50.4 bits (119), Expect = 3.970e-6
Identity = 24/50 (48.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    1 QVKILPTVICFIDGIAVHHIIGFEGLTAGLAADKLDEWPVSALARELALA 150
            QV+++PTV+ F DG+A   ++GF+GLT GLA  K +E+   AL   LA A
Sbjct:  100 QVQVMPTVVIFKDGVATARLVGFDGLTEGLAPGKENEFRTDALESWLARA 149
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BLAST of mRNA_H-paniculata_contig10539.352.1 vs. uniprot
Match: A0A077ZT00_STYLE (Phosducin-like protein 3 isoform 1 n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A077ZT00_STYLE)

HSP 1 Score: 49.7 bits (117), Expect = 1.670e-5
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 QVKILPTVICFIDGIAVHHIIGFEGLTAGLAADKLDEWPVSALARELALAKVL 159
            QV++LPT+ICFIDGIAV  I+GFE L A       D++P  +L R L  + VL
Sbjct:  174 QVQVLPTMICFIDGIAVDRIVGFEDLGAR------DDFPQISLTRRLIRSGVL 220
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BLAST of mRNA_H-paniculata_contig10539.352.1 vs. uniprot
Match: A0A7S3FU40_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidium rassoulzadegani TaxID=1082188 RepID=A0A7S3FU40_9SPIT)

HSP 1 Score: 47.0 bits (110), Expect = 4.260e-5
Identity = 21/47 (44.68%), Postives = 30/47 (63.83%), Query Frame = 1 
Query:    1 QVKILPTVICFIDGIAVHHIIGFEGLTAGLAADKLDEWPVSALAREL 141
            QV++LPT++CF+DGIA+  ++GFE L         DE+P   L R L
Sbjct:   71 QVQVLPTIVCFVDGIALDRVVGFEELGGN------DEFPTLLLTRRL 111
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BLAST of mRNA_H-paniculata_contig10539.352.1 vs. uniprot
Match: A0A8J8SZW4_HALGN (Thioredoxin domain-containing protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8SZW4_HALGN)

HSP 1 Score: 47.8 bits (112), Expect = 4.990e-5
Identity = 22/47 (46.81%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:    1 QVKILPTVICFIDGIAVHHIIGFEGLTAGLAADKLDEWPVSALAREL 141
            Q+++LPT+ICFIDGIAV  ++GFE +         D++P  AL R L
Sbjct:   95 QIQVLPTIICFIDGIAVDRVVGFEDM------GNRDDFPQIALTRRL 135
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BLAST of mRNA_H-paniculata_contig10539.352.1 vs. uniprot
Match: A0A7J6MPG4_PERCH (Thioredoxin domain-containing protein n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6MPG4_PERCH)

HSP 1 Score: 48.5 bits (114), Expect = 5.060e-5
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    1 QVKILPTVICFIDGIAVHHIIGFEGLTAGLAADKLDEWPVSALARELALAKVLY 162
            +V++LPT + F+ GIAVHHI+GFEGL        +D   +++L+    LAKVLY
Sbjct:  213 RVRVLPTTVLFVKGIAVHHIVGFEGLRC------IDGEDITSLS----LAKVLY 256
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BLAST of mRNA_H-paniculata_contig10539.352.1 vs. uniprot
Match: A0A7S3H0T6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H0T6_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 9.040e-5
Identity = 20/47 (42.55%), Postives = 30/47 (63.83%), Query Frame = 1 
Query:    4 VKILPTVICFIDGIAVHHIIGFEGLTAGLAADKLDEWPVSALARELA 144
            ++ +PTV+ F+DG+A+  I+GFE L   +   + D WP   LAR LA
Sbjct:  195 IRTMPTVVIFLDGVAIDKILGFEELADSMPPGQEDSWPTIVLARLLA 241
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10539.352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7G1T8_ECTSI1.560e-2183.02Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
A0A482RU92_9ARCH1.380e-854.35Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A835YQ77_9STRA4.330e-750.94Thioredoxin-like protein n=1 Tax=Tribonema minus T... [more]
J9IP16_9SPIT2.460e-649.06Thioredoxin domain-containing protein n=1 Tax=Oxyt... [more]
F0YBM5_AURAN3.970e-648.00Thioredoxin domain-containing protein (Fragment) n... [more]
A0A077ZT00_STYLE1.670e-550.94Phosducin-like protein 3 isoform 1 n=1 Tax=Stylony... [more]
A0A7S3FU40_9SPIT4.260e-544.68Hypothetical protein (Fragment) n=1 Tax=Strombidiu... [more]
A0A8J8SZW4_HALGN4.990e-546.81Thioredoxin domain-containing protein n=1 Tax=Halt... [more]
A0A7J6MPG4_PERCH5.060e-546.30Thioredoxin domain-containing protein n=1 Tax=Perk... [more]
A0A7S3H0T6_9STRA9.040e-542.55Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10539contigH-paniculata_contig10539:169..342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue1.5e-17
Seed eggNOG ortholog2880.D7G1T8
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000226,GO:0000278,GO:0000280,GO:0000281,GO:0000910,GO:0000911,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006355,GO:0006357,GO:0006457,GO:0006725,GO:0006807,GO:0006996,GO:0006997,GO:0007000,GO:0007010,GO:0007017,GO:0007049,GO:0007329,GO:0008092,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009371,GO:0009373,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0015631,GO:0016043,GO:0016049,GO:0018130,GO:0019219,GO:0019222,GO:0019236,GO:0019438,GO:0022402,GO:0030865,GO:0031122,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031683,GO:0032506,GO:0034404,GO:0034641,GO:0034654,GO:0040007,GO:0042221,GO:0042455,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043622,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046019,GO:0046116,GO:0046483,GO:0048285,GO:0048487,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051211,GO:0051252,GO:0051254,GO:0051301,GO:0051716,GO:0055086,GO:0060255,GO:0061640,GO:0065007,GO:0070887,GO:0071310,GO:0071444,GO:0071704,GO:0071840,GO:0080090,GO:0097435,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901522,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659,GO:1902410,GO:1902680,GO:1903047,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.queuosine biosynthetic process
EggNOG OGsCOG0526@1,KOG1672@2759
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-07_004190.1
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size174
Cds size174
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928757.115102-CDS-H-paniculata_contig10539:168..3421622928757.115102-CDS-H-paniculata_contig10539:168..342Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10539 169..342 +
1691480607.6204867-CDS-H-paniculata_contig10539:168..3421691480607.6204867-CDS-H-paniculata_contig10539:168..342Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10539 169..342 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10539.352.1prot_H-paniculata_contig10539.352.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10539 169..342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10539.352.1

>prot_H-paniculata_contig10539.352.1 ID=prot_H-paniculata_contig10539.352.1|Name=mRNA_H-paniculata_contig10539.352.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp
QVKILPTVICFIDGIAVHHIIGFEGLTAGLAADKLDEWPVSALARELALA
KVLYCCT*
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mRNA from alignment at H-paniculata_contig10539:169..342+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10539.352.1 ID=mRNA_H-paniculata_contig10539.352.1|Name=mRNA_H-paniculata_contig10539.352.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=174bp|location=Sequence derived from alignment at H-paniculata_contig10539:169..342+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGAAAATCCTGCCGACCGTAATTTGTTTTATCGATGGGATCGCAGT
ACATCACATCATCGGCTTCGAGGGGCTAACTGCCGGACTGGCGGCGGACA
AGCTGGACGAGTGGCCGGTGTCCGCGCTTGCTAGAGAGCTCGCGCTCGCC
AAGGTACTGTATTGTTGTACTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig10539:169..342+

>mRNA_H-paniculata_contig10539.352.1 ID=mRNA_H-paniculata_contig10539.352.1|Name=mRNA_H-paniculata_contig10539.352.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig10539:169..342+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGAAAATCCTGCCGACCGTAATTTGTTTTATCGATGGGATCGCAGT
ACATCACATCATCGGCTTCGAGGGGCTAACTGCCGGACTGGCGGCGGACA
AGCTGGACGAGTGGCCGGTGTCCGCGCTTGCTAGAGAGCTCGCGCTCGCC
AAGGTACTGTATTGTTGTACTTGACAGGTGAAAATCCTGCCGACCGTAAT
TTGTTTTATCGATGGGATCGCAGTACATCACATCATCGGCTTCGAGGGGC
TAACTGCCGGACTGGCGGCGGACAAGCTGGACGAGTGGCCGGTGTCCGCG
CTTGCTAGAGAGCTCGCGCTCGCCAAGGTACTGTATTGTTGTACTTGA
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