mRNA_H-paniculata_contig1601.3494.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1601.3494.1
Unique NamemRNA_H-paniculata_contig1601.3494.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1601.3494.1 vs. uniprot
Match: D8LRM2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM2_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 2.590e-18
Identity = 52/84 (61.90%), Postives = 63/84 (75.00%), Query Frame = 1 
Query:    4 EAGQRVVERTYERNLAAVHEEAKKRLAAEGERRTREVAEERRKSKAVVGALQALQGELRSSDEKGSGLERQVLQLSARINKVES 255
            EA  R VER ++R L A+ EEAKK+L  E  RR REV++ R+KSKAVV ALQ LQGEL  S+ KGSGLERQV QLSAR+++  S
Sbjct:  620 EASHRAVERNHDRALVAIREEAKKKLLEEEARRVREVSDARKKSKAVVEALQTLQGELTQSEAKGSGLERQVSQLSARMSRAGS 703
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1601.3494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRM2_ECTSI2.590e-1861.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1601contigH-paniculata_contig1601:23412..24756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size290
Cds size288
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1601.3494.1prot_H-paniculata_contig1601.3494.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1601 23412..24756 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929282.2088122-CDS-H-paniculata_contig1601:23411..235401622929282.2088122-CDS-H-paniculata_contig1601:23411..23540Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1601 23412..23540 -
1691480799.9587924-CDS-H-paniculata_contig1601:23411..235401691480799.9587924-CDS-H-paniculata_contig1601:23411..23540Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1601 23412..23540 -
1622929282.2251656-CDS-H-paniculata_contig1601:24009..240901622929282.2251656-CDS-H-paniculata_contig1601:24009..24090Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1601 24010..24090 -
1691480799.9685826-CDS-H-paniculata_contig1601:24009..240901691480799.9685826-CDS-H-paniculata_contig1601:24009..24090Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1601 24010..24090 -
1622929282.241548-CDS-H-paniculata_contig1601:24678..247561622929282.241548-CDS-H-paniculata_contig1601:24678..24756Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1601 24679..24756 -
1691480799.9757757-CDS-H-paniculata_contig1601:24678..247561691480799.9757757-CDS-H-paniculata_contig1601:24678..24756Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1601 24679..24756 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1601.3494.1

>prot_H-paniculata_contig1601.3494.1 ID=prot_H-paniculata_contig1601.3494.1|Name=mRNA_H-paniculata_contig1601.3494.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
MEAGQRVVERTYERNLAAVHEEAKKRLAAEGERRTREVAEERRKSKAVVG
ALQALQGELRSSDEKGSGLERQVLQLSARINKVESVGNTGRSDSGS
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mRNA from alignment at H-paniculata_contig1601:23412..24756-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1601.3494.1 ID=mRNA_H-paniculata_contig1601.3494.1|Name=mRNA_H-paniculata_contig1601.3494.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1345bp|location=Sequence derived from alignment at H-paniculata_contig1601:23412..24756- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAGCAGGGCAAAGAGTTGTGGAGAGAACCTACGAGCGAAACCTGGC
GGCTGTGCACGAAGAGGCAAAAAAACGGGTGCGGGGCTATAGCTCGAAGT
ATATTGTAACGCAAGCTTGTGGTCGTAATGCCACCGTAGACGAACTACGA
GGGCTGTGGTCCGTCCTTTTTGCCATATTTTATACGCACCCTGTTCCGAA
GACGGCGCGCACCCTACCGAGATTAGAGGGATGTGTGTCCAATCTAGACT
ACGGTCACATAGCTTCTCCAAGTGGCAGAAGATAGAGTAGTAAAGAAGAC
AATAATTGTACTGAAGAACGTGATTGTGTTGTATTTGGTTATAGGCTTCG
CTAGAGATGCCGTTGGGGGCGCACGCGGGGGGTATAGTCGAAGGGTATTG
ATCGCGTACCAATGACCGTCGATCTCACGCGATCCACGACCAGATGAAGA
ATAGAAGGAAGTAAAGGCTATCTCATTGCGCACTCTGTTCAGCCTCATAG
GCTACACGATTTAGGGACCCTGTTCCGTGTGCCTGGGATGTAAAATTGGG
GCATGTCGATCGCATGCAAGTGACGTTCAGCCTCGCGTGAGGGCAATAAT
ATATTCAAGAGACAAGAAAAAAACGCCAGCTATTTGCACCCTCTGTTTCA
CCTTGTAAACTAACAGCTAGCAGCAGAAGGAGAACGAAGGACGCGAGAAG
TAGCAGAAGAACGCCGGAAATCCAAGGCGGTAGTCGGAGCTCTACAGGTG
AGGTCGTCCGCGACTTGGGAATCGCGATACCACACATGTCATCTGGAATA
AGTGTCACTTGCACTGACCTGCAACGGTGAGCAAACGATCACGGAATGAC
ACGGCAATCGATATGTTTAAGTTGTTTGTGTATGGATGTGCGGCTCTTGT
AGGTACTCCTTGCGATCGTTCAAAAATATACGATATGGTTGAAGAGCCTT
TCGTCAGCTAGGAAGTACGCACACTAAGGTTTCACAGCGTCGTAGACTAT
GTTGTGGATGTTCGATAAACCTCTGATGAATGCTGATACGGCTGCCCCCC
TAGGACTTGCAAGTCGCAGGCGTATGAAGGCTTGTTTGCCCCTCGCTGAT
ACGAACAAATTTTCTGGAGCGCGTTAGGGTAAACCCACACACGCTTCTCC
TGTCAACCTACATGTTGACCCCAAATTGTTAAGTATTTCACACTGCCCGA
AAAAACGCAAAACCAGGCGCTGCAGGGCGAGCTAAGAAGCTCCGACGAAA
AAGGCTCCGGTTTGGAGAGGCAAGTGTTGCAGCTTTCAGCTCGCATTAAC
AAGGTCGAGTCAGTCGGAAACACCGGACGCAGCGACAGTGGTAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig1601:23412..24756-

>mRNA_H-paniculata_contig1601.3494.1 ID=mRNA_H-paniculata_contig1601.3494.1|Name=mRNA_H-paniculata_contig1601.3494.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig1601:23412..24756- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAGCAGGGCAAAGAGTTGTGGAGAGAACCTACGAGCGAAACCTGGC
GGCTGTGCACGAAGAGGCAAAAAAACGGATGGAAGCAGGGCAAAGAGTTG
TGGAGAGAACCTACGAGCGAAACCTGGCGGCTGTGCACGAAGAGGCAAAA
AAACGGCTAGCAGCAGAAGGAGAACGAAGGACGCGAGAAGTAGCAGAAGA
ACGCCGGAAATCCAAGGCGGTAGTCGGAGCTCTACAGCTAGCAGCAGAAG
GAGAACGAAGGACGCGAGAAGTAGCAGAAGAACGCCGGAAATCCAAGGCG
GTAGTCGGAGCTCTACAGGCGCTGCAGGGCGAGCTAAGAAGCTCCGACGA
AAAAGGCTCCGGTTTGGAGAGGCAAGTGTTGCAGCTTTCAGCTCGCATTA
ACAAGGTCGAGTCAGTCGGAAACACCGGACGCAGCGACAGTGGTAGCGCG
CTGCAGGGCGAGCTAAGAAGCTCCGACGAAAAAGGCTCCGGTTTGGAGAG
GCAAGTGTTGCAGCTTTCAGCTCGCATTAACAAGGTCGAGTCAGTCGGAA
ACACCGGACGCAGCGACAGTGGTAGC
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