mRNA_H-paniculata_contig10535.349.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10535.349.1
Unique NamemRNA_H-paniculata_contig10535.349.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig10535.349.1 vs. uniprot
Match: A0A482SQF6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SQF6_9ARCH)

HSP 1 Score: 122 bits (305), Expect = 1.340e-31
Identity = 46/63 (73.02%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    1 QDNKAIYRSDFFPGLGWLMGRTVWQELSGKWPKAYWDDWLRDPAQRQGRQFLRPEICRTYHFG 189
            QD K +YRSDFFPGLGW++ R +W+EL  KWPKAYWDDWLR+PAQRQ RQF+RPE+CRT H+G
Sbjct:  220 QDTKQLYRSDFFPGLGWMLSRRIWEELGPKWPKAYWDDWLREPAQRQSRQFIRPEVCRTLHYG 282
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BLAST of mRNA_H-paniculata_contig10535.349.1 vs. uniprot
Match: D7FXV4_ECTSI (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase, family GT13 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXV4_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.520e-31
Identity = 46/65 (70.77%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:    1 QDNKAIYRSDFFPGLGWLMGRTVWQELSGKWPKAYWDDWLRDPAQRQGRQFLRPEICRTYHFGKK 195
            +DN+A++RSDFFPGLGW++ R VW EL+  WP+AYWDDWLRDP +R+GRQF+RPE+CRTYHFG+K
Sbjct:  342 KDNRALFRSDFFPGLGWMLPRRVWDELAADWPEAYWDDWLRDPRRRKGRQFIRPEVCRTYHFGQK 406
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BLAST of mRNA_H-paniculata_contig10535.349.1 vs. uniprot
Match: A0A6H5L776_9PHAE (GT13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L776_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 2.550e-31
Identity = 46/64 (71.88%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:    4 DNKAIYRSDFFPGLGWLMGRTVWQELSGKWPKAYWDDWLRDPAQRQGRQFLRPEICRTYHFGKK 195
            DNKA++RSDFFPGLGW++ R VW EL+  WP+AYWDDWLRDP +R+GRQF+RPE+CRT+HFG+K
Sbjct:  245 DNKALFRSDFFPGLGWMLPRRVWDELAADWPEAYWDDWLRDPRRRKGRQFIRPEVCRTFHFGQK 308
[Close]
BLAST of mRNA_H-paniculata_contig10535.349.1 vs. uniprot
Match: A0A1U7WJI4_NICSY (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase n=2 Tax=Nicotiana sylvestris TaxID=4096 RepID=A0A1U7WJI4_NICSY)

HSP 1 Score: 111 bits (277), Expect = 6.170e-29
Identity = 43/64 (67.19%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    1 QDNKAIYRSDFFPGLGWLMGRTVWQELSGKWPKAYWDDWLRDPAQRQGRQFLRPEICRTYHFGK 192
            QD  A+YRSDFFPGLGW++ ++ W ELS KWPKAYWDDWLR     +GRQF+RPE+CRTY+FG+
Sbjct:   36 QDPYALYRSDFFPGLGWMLSKSTWDELSPKWPKAYWDDWLRLKENHRGRQFIRPEVCRTYNFGE 99
[Close]
BLAST of mRNA_H-paniculata_contig10535.349.1 vs. uniprot
Match: A0A7S2XX81_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX81_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.180e-28
Identity = 40/64 (62.50%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:    1 QDNKAIYRSDFFPGLGWLMGRTVWQELSGKWPKAYWDDWLRDPAQRQGRQFLRPEICRTYHFGK 192
            +D + +YRSDFFPGLGW+M R +W+E   KWP+ YWDDW+R+P QR+GR+ +RPEICRT+HFG+
Sbjct:   62 KDPEMLYRSDFFPGLGWMMPRRLWEEFGPKWPRGYWDDWIREPPQRKGRETIRPEICRTFHFGE 125
[Close]
BLAST of mRNA_H-paniculata_contig10535.349.1 vs. uniprot
Match: UPI00090170FD (alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00090170FD)

HSP 1 Score: 109 bits (273), Expect = 2.700e-28
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:    4 DNKAIYRSDFFPGLGWLMGRTVWQELSGKWPKAYWDDWLRDPAQRQGRQFLRPEICRTYHFGK 192
            D  A+YRSDFFPGLGW++ R+ W ELS KWPKAYWDDWLR     +GRQF+RPE+CRTY+FG+
Sbjct:   41 DPYALYRSDFFPGLGWMLKRSTWDELSPKWPKAYWDDWLRLKENHKGRQFIRPEVCRTYNFGE 103
[Close]
BLAST of mRNA_H-paniculata_contig10535.349.1 vs. uniprot
Match: A0A1Q3ALD2_CEPFO (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3ALD2_CEPFO)

HSP 1 Score: 113 bits (283), Expect = 2.940e-28
Identity = 44/63 (69.84%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:    4 DNKAIYRSDFFPGLGWLMGRTVWQELSGKWPKAYWDDWLRDPAQRQGRQFLRPEICRTYHFGK 192
            D+ A+YRSDFFPGLGW++ R+ W ELS KWPKAYWDDWLR    R+GRQF+RPE+CRTY+FG+
Sbjct:  252 DSYALYRSDFFPGLGWMLSRSTWDELSPKWPKAYWDDWLRLKENRKGRQFIRPEVCRTYNFGE 314
[Close]
BLAST of mRNA_H-paniculata_contig10535.349.1 vs. uniprot
Match: A0A2R6R743_ACTCC (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase n=1 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6R743_ACTCC)

HSP 1 Score: 112 bits (279), Expect = 3.260e-28
Identity = 44/64 (68.75%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    1 QDNKAIYRSDFFPGLGWLMGRTVWQELSGKWPKAYWDDWLRDPAQRQGRQFLRPEICRTYHFGK 192
            QD  A+YRSDFFPGLGW++ ++ W ELS KWPKAYWDDWLR     +GRQF+RPEICRTY+FG+
Sbjct:  157 QDPHALYRSDFFPGLGWMLSKSTWNELSPKWPKAYWDDWLRLKENHKGRQFIRPEICRTYNFGE 220
[Close]
BLAST of mRNA_H-paniculata_contig10535.349.1 vs. uniprot
Match: A0A2I4GCI0_JUGRE (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase n=7 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4GCI0_JUGRE)

HSP 1 Score: 112 bits (281), Expect = 4.760e-28
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:    4 DNKAIYRSDFFPGLGWLMGRTVWQELSGKWPKAYWDDWLRDPAQRQGRQFLRPEICRTYHFGK 192
            D  A+YRSDFFPGLGW++ R+ W ELS KWPKAYWDDWLR    R+GRQF+RPEICRTY+FG+
Sbjct:  235 DPYALYRSDFFPGLGWMLARSTWDELSPKWPKAYWDDWLRLKENRKGRQFIRPEICRTYNFGE 297
[Close]
BLAST of mRNA_H-paniculata_contig10535.349.1 vs. uniprot
Match: A0A540LRR0_MALBA (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540LRR0_MALBA)

HSP 1 Score: 111 bits (277), Expect = 5.110e-28
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:    4 DNKAIYRSDFFPGLGWLMGRTVWQELSGKWPKAYWDDWLRDPAQRQGRQFLRPEICRTYHFGK 192
            D K +YRSDFFPGLGW++ R+ W ELS KWPKAYWDDWLR     +GRQF+RPE+CRTY+FG+
Sbjct:  142 DPKILYRSDFFPGLGWMLARSTWDELSPKWPKAYWDDWLRLQENHKGRQFIRPEVCRTYNFGE 204
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10535.349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A482SQF6_9ARCH1.340e-3173.02Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
D7FXV4_ECTSI1.520e-3170.77Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu... [more]
A0A6H5L776_9PHAE2.550e-3171.88GT13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A1U7WJI4_NICSY6.170e-2967.19Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu... [more]
A0A7S2XX81_9STRA1.180e-2862.50Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
UPI00090170FD2.700e-2868.25alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu... [more]
A0A1Q3ALD2_CEPFO2.940e-2869.84Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu... [more]
A0A2R6R743_ACTCC3.260e-2868.75Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu... [more]
A0A2I4GCI0_JUGRE4.760e-2871.43Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu... [more]
A0A540LRR0_MALBA5.110e-2868.25Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10535contigH-paniculata_contig10535:4917..5111 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.4
Seed ortholog evalue1.9e-26
Seed eggNOG ortholog2880.D7FXV4
Preferred nameMGAT1
KEGG koko:K00726
KEGG ReactionR05983
KEGG Pathwayko00510,ko00513,ko01100,map00510,map00513,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0001701,GO:0002252,GO:0002376,GO:0003002,GO:0003674,GO:0003824,GO:0003827,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005797,GO:0005975,GO:0006040,GO:0006047,GO:0006049,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007568,GO:0007610,GO:0007626,GO:0008150,GO:0008152,GO:0008194,GO:0008340,GO:0008344,GO:0008375,GO:0009056,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009227,GO:0009790,GO:0009792,GO:0009987,GO:0010259,GO:0012505,GO:0016020,GO:0016021,GO:0016319,GO:0016740,GO:0016757,GO:0016758,GO:0018193,GO:0018196,GO:0018279,GO:0019439,GO:0019538,GO:0030534,GO:0031090,GO:0031224,GO:0031984,GO:0031985,GO:0032501,GO:0032502,GO:0034641,GO:0034645,GO:0034655,GO:0034656,GO:0035010,GO:0035282,GO:0035283,GO:0035284,GO:0036211,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044270,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046348,GO:0046483,GO:0046700,GO:0048471,GO:0048513,GO:0048731,GO:0048856,GO:0055086,GO:0060322,GO:0070085,GO:0071704,GO:0098588,GO:0098791,GO:0140096,GO:0140103,GO:1901135,GO:1901136,GO:1901137,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576
EggNOG free text desc.alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity
EggNOG OGsKOG1413@1,KOG1413@2759
EC2.4.1.101
COG Functional cat.S
CAZyGT13
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928756.90509-CDS-H-paniculata_contig10535:4916..51111622928756.90509-CDS-H-paniculata_contig10535:4916..5111Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10535 4917..5111 +
1691480607.5000536-CDS-H-paniculata_contig10535:4916..51111691480607.5000536-CDS-H-paniculata_contig10535:4916..5111Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10535 4917..5111 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10535.349.1prot_H-paniculata_contig10535.349.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10535 4917..5111 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10535.349.1

>prot_H-paniculata_contig10535.349.1 ID=prot_H-paniculata_contig10535.349.1|Name=mRNA_H-paniculata_contig10535.349.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
QDNKAIYRSDFFPGLGWLMGRTVWQELSGKWPKAYWDDWLRDPAQRQGRQ
FLRPEICRTYHFGKK
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mRNA from alignment at H-paniculata_contig10535:4917..5111+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10535.349.1 ID=mRNA_H-paniculata_contig10535.349.1|Name=mRNA_H-paniculata_contig10535.349.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=195bp|location=Sequence derived from alignment at H-paniculata_contig10535:4917..5111+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGACAACAAGGCTATCTATCGCTCTGACTTTTTCCCGGGGCTTGGATG
GTTGATGGGACGAACGGTGTGGCAAGAGCTGTCGGGGAAATGGCCGAAAG
CCTACTGGGACGATTGGCTGAGGGACCCTGCTCAGCGGCAGGGCAGGCAG
TTTTTGCGGCCGGAGATCTGTCGGACCTATCACTTCGGTAAAAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig10535:4917..5111+

>mRNA_H-paniculata_contig10535.349.1 ID=mRNA_H-paniculata_contig10535.349.1|Name=mRNA_H-paniculata_contig10535.349.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig10535:4917..5111+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGACAACAAGGCTATCTATCGCTCTGACTTTTTCCCGGGGCTTGGATG
GTTGATGGGACGAACGGTGTGGCAAGAGCTGTCGGGGAAATGGCCGAAAG
CCTACTGGGACGATTGGCTGAGGGACCCTGCTCAGCGGCAGGGCAGGCAG
TTTTTGCGGCCGGAGATCTGTCGGACCTATCACTTCGGTAAAAAGCAGGA
CAACAAGGCTATCTATCGCTCTGACTTTTTCCCGGGGCTTGGATGGTTGA
TGGGACGAACGGTGTGGCAAGAGCTGTCGGGGAAATGGCCGAAAGCCTAC
TGGGACGATTGGCTGAGGGACCCTGCTCAGCGGCAGGGCAGGCAGTTTTT
GCGGCCGGAGATCTGTCGGACCTATCACTTCGGTAAAAAG
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