mRNA_H-paniculata_contig1599.3472.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1599.3472.1
Unique NamemRNA_H-paniculata_contig1599.3472.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1599.3472.1 vs. uniprot
Match: A0A6H5JLT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT0_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.130e-8
Identity = 39/86 (45.35%), Postives = 50/86 (58.14%), Query Frame = 1 
Query:  466 KRGRDSEVET------DALMNNQGI------EPLMTVAEAFSDELQTLRANEHFKGSARDVEVMASMMRCLARGMDDTERLLLLEN 687
            KR R  EVE       DA    +G       E L  +AEAF+D+L  LR +EHF GSA D+  MA MMRC+A G+D  E+ +LL+N
Sbjct:   87 KRQRHDEVEKPAEDAGDASGGEEGHATTQEDECLGLMAEAFADDLDLLRKDEHFGGSANDIAAMADMMRCIAGGLDSIEQRMLLDN 172
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1599.3472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JLT0_9PHAE1.130e-845.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1599contigH-paniculata_contig1599:926..6207 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_004060.1
Exons3
Model size917
Cds size519
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1599.3472.1prot_H-paniculata_contig1599.3472.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1599 1078..5961 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929277.4468794-UTR-H-paniculata_contig1599:925..10771622929277.4468794-UTR-H-paniculata_contig1599:925..1077Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1599 926..1077 -
1691480797.4904885-UTR-H-paniculata_contig1599:925..10771691480797.4904885-UTR-H-paniculata_contig1599:925..1077Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1599 926..1077 -
1622929277.5123794-UTR-H-paniculata_contig1599:5961..62071622929277.5123794-UTR-H-paniculata_contig1599:5961..6207Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1599 5962..6207 -
1691480797.5425236-UTR-H-paniculata_contig1599:5961..62071691480797.5425236-UTR-H-paniculata_contig1599:5961..6207Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1599 5962..6207 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929277.4651928-CDS-H-paniculata_contig1599:1077..12071622929277.4651928-CDS-H-paniculata_contig1599:1077..1207Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1599 1078..1207 -
1691480797.5030625-CDS-H-paniculata_contig1599:1077..12071691480797.5030625-CDS-H-paniculata_contig1599:1077..1207Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1599 1078..1207 -
1622929277.480518-CDS-H-paniculata_contig1599:1796..20321622929277.480518-CDS-H-paniculata_contig1599:1796..2032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1599 1797..2032 -
1691480797.5132658-CDS-H-paniculata_contig1599:1796..20321691480797.5132658-CDS-H-paniculata_contig1599:1796..2032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1599 1797..2032 -
1622929277.495922-CDS-H-paniculata_contig1599:5808..59611622929277.495922-CDS-H-paniculata_contig1599:5808..5961Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1599 5809..5961 -
1691480797.5298984-CDS-H-paniculata_contig1599:5808..59611691480797.5298984-CDS-H-paniculata_contig1599:5808..5961Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1599 5809..5961 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1599.3472.1

>prot_H-paniculata_contig1599.3472.1 ID=prot_H-paniculata_contig1599.3472.1|Name=mRNA_H-paniculata_contig1599.3472.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=173bp
MEQKQQQQNIKAGLDACWQQYCALRQGVLEAANATGYPISKISQLDMKLE
QSLLTPDRVSANHGNAPPRLTGGKRGRDSEVETDALMNNQGIEPLMTVAE
AFSDELQTLRANEHFKGSARDVEVMASMMRCLARGMDDTERLLLLENLRT
ANNGPWKGSDTRNTPTVVPPGP*
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mRNA from alignment at H-paniculata_contig1599:926..6207-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1599.3472.1 ID=mRNA_H-paniculata_contig1599.3472.1|Name=mRNA_H-paniculata_contig1599.3472.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5282bp|location=Sequence derived from alignment at H-paniculata_contig1599:926..6207- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGAAACAAATGCTATCACATGATGCCTGCAACATGCCACATCTTTGTGT
TGGGTCTCCCAACAACGCAAGACCAGCGCGGTGAGAGTGCCTGCCTTTCG
CCAACAGATAATCGTGGCACCATAAAACACGGATCTCTTCACATCGCGCT
GTTAGGTGGTTGAGCAACTCACGATCGATATTACGCTAAGTGAAGGAGGA
AATAAGGATCCAATCGACTGGTCGCTGCTATTAAAACCTGCGCGGGATGG
AACAGAAGCAGCAGCAGCAGAACATCAAAGCGGGGTTGGACGCCTGCTGG
CAGCAGTATTGCGCATTGAGGCAAGGCGTGCTTGAGGCCGCTAATGCTAC
CGGATACCCCATCTCTAAGATCAGTCAGCTGGATATGAAGCTCGAGCAGG
TGAGCTGCCGAACGACTGCTGCAAACTACACGTCCACTTGAACCCGGGAT
GTATCTCCGTCATACACACGTGGTAGAAGAGAGAAGATTGCAGTCCACGT
CTTGTCTCCGCTAGTGTAAATTTATGAGGAGTATGTCCCACCTCTGAAAT
AGAGATTCCCGGCCATATGAACTTCTACGGTGCTGGTATTAGTCTTGGCA
GCAGCAGCGGCGGTGGCGGCGAAGGCGGCTTGGTACGCCGTTTTTTGGCA
GGGTCGTTTTCCCTCTCGCTCTTGATGGGGCAGATACATGAATATTGTCA
GAGGGGTGAAACATTCCACGTACCTGCGGCAGGCTGGCTTTTGCGCAAAA
GAAACGTTGAGATTTCGAGATTTCACGAAGTAGTGCAGCAGGTGTGTGTT
ACATTACCATATAGCAGTATATACACAAATACTGAACAGCGTGTTTCAAT
TCGCCAATCTCTCCAGAATTCATCTCTTCAGAAAGGACTGCACGCTATGG
CAGCCCTTGTGCACTGTGTGCGGTTCGACAGCGTCTTTCGATCGACAATT
CTGTCTCCAATTTATTTCCACAGACAGGGCCGTGTTACTTCTCTATGGCA
TCATTTGTGCATTATGGGCGGTTTGACAAACAGGACATGACCACAATATG
AGGAGCCTCTCTTGACAAACAGGGCACTCGTGAGGGGAAAATAAAACAAC
AGCCCAGAAAAGCAGTACTTGTACAAAGTGGTCGTTTTTGTCGTGACGGG
AACTCCACGAACCGAGCAAGAATGGAAAAGGTAGATAGCGTGCCGTGACG
GCACTGCTACCAGTACCAGGCTTAGATTGCCACCAGTCCGGGAGCATGTT
CTGTGTCTCTCAAGATTGTCGAGTCGCATGACCGGTGAAACAAAAACCTG
CTCCTTTTCAGTCTCTTCTGTGTCAATTTCAAGTTATTCCGGTTTTGGAG
CTCGGCGTTTCATCGATGTAACATTCGCATGCCGGGCAGGCGGTGAGAAA
GTAAAGGGTGCTGAAACTAACTACGGATTGTCAGTGGTAGATCGCCAACG
GTTTGGCAGCGTTTCGTGTAGTGTAGCGCTCGAAATGTTGGAAACAGGTT
GTAAAAACTGCGTCCGAAAATCGATGATGGTTTCTGTATGGTGTCCCTCT
CAACAAACGTTTTTACATGATTTTGTCTTGGTCCAGAAGGATTAGTGAAA
CCCTCGCTCCGCTAACAAGTGCGCACGTATTTTTGTCGATAATCTGTTCT
GTTTGACACCCACAAATTATTATGCCAGCGCGTACAGACAACAATGTGGA
GCTCACCCGAGTTTGTCGATAAGCTGTTCCATTTGACACCCACACGTTAT
TATGCCAGCGCGTACAGACAACAATGTGGAGCTCACCCGAGTTTGTCGAT
AAGCTGTTCCATTTGACATCCACACGTTATTATGCCAGCGCGTACAGACA
GACAACAATGTGGAGCTCACCCGAGTTTGTCGATAAGAGTTCGTGAATAA
TTTATCACCTGCTTTCACTGTGCCACATGCGAGCGCCCACATGTAGGCCT
GACGAGAGGGTTTGGATGTTGTTTTGTCGTGTTGAAATGAATGTCGGAGC
GCAACATCATTCAGTTAACATGTGATAGAATCAAAACTAATCACAAGTTA
ACTCAACTATGAAAATCGTCTAGCTGGCCCGGCAGTTGTTGGGGCTCACA
GCATTGGGCCTTGGTCCTCCTCGAATAGGAGCGAGAGCGGGGAACCATGC
ACGCGAAACAGCTGAATAAACCACCGATTTTTGTCGACGAGCTGAGGGGT
ATGCCGACCTGACCAGAGAGTACAGCATGTCGGACTCTATTCTACGCATG
TACGTACATACGTACGTATATACACTTGGAGCTGCACCCTCCGGATGCGT
GCAATGGTACACATTTGCGAGCTTGTGTTTTTCAGGTTAACTTCCACCTG
AGATTTTTTGTCGGGCGTTAACTGAATGGTGTTTTTTGTTTTATCTCTTC
TTTAAATTCTCCTGCACCATACCGTAACACCGGATTCCAACATGAAAACA
GAGTGTGACGGGAGTGCAAAGAATATATCGGCCAGTCGAGGAGTGGTTAA
CATTTTTCAAGCCGGTGGTGGCAACAGGTCAACTTCACACTACATAGTCA
CGCATGAATTGGCGTCCACCTCTTATCAATAATACGCCGGGGTTAGATGC
ATCAAATTCACCAGGCGATATCATCCATCACAGCTGACAAGCCTTGATCA
TGACTGCATCTTCTCGATGTTGAGACGGGTTCAAAATATAGAATATGGAT
TTCCCCCTAGTTTTTTTAGTTGCTATTTACCATACTCTATCTCTTGATGG
GTATGAGGGAGGTTTACTCCAGTTCGTCAAGTATGTGAATTTTCGGTTTC
GTTTGTACACATTTAGTTCACGATTTATTGTGCGCGGATGCGAGCGGAAA
CAACACCGGAAATAGCCGTAACCATAAGTCTGACCCCAACCCACAGGCCT
AGAGTGCGCTGGTAGAGTAGAGGTCCAATCGCCTTCGGTAGCGTCTAACA
TAACTCAAACACTGTGCGGGTCAGTGGCATGGCACTGACCGTGGAGCCAG
GGTGGGGATGTACCCCACAGTAAACCAAGTGAAACGGAACTTCCTATATC
TTACGACAAACTGGGGTAACTCTACTGATAGGGATACTGTTAGGGACAGC
TAAACGGGCGGATACTTGTCGTTCCGCGTCCGGAAAAATACAAAACAAGT
TTTGAATCCCCGCTTTTTTTTGGCGCCACGCCGACGCCCACTTGAAACCA
ATTATTTTGTCATTGGTATAGATTTCAGCGAAAATACCAGCTCGAGACAG
GTAATGGCGTGCGCGGCCACACTAGTATCGAAACAAATGTGTGTGGGGAA
GCTAATAATGTATCAGACCCCATCTCTGACGGTGCTGCACCGTACTATAC
TGTGATGGACGGTACGTGCTGTGTAAGCGTTGGATTTTTCCCTCATTTAT
TTTTAGCTCTTTTTTTTCGAGGGGGAGGCGTAGTCTTTTGAGGCTGTAAG
CTTTTTGCTTTACCCGTCACCTTCATATTTTATCGATATGAATCACAGAC
GCGCACATACCGGATATTATTTGGAACAATGTTTTCACTTTCCGTCAAGG
CGGGTTGGATCATGATTGTACACACAGCTCGATTGCTACTCGTTGTACTT
ACCATACACCTTGTCCTATTGGGGGTCACCACAAGCGAGGACCCCTCTTT
TTCCAGGGGAATTTTTTCTCTTGAGGCCCTGTGCCTACGATGCTGTACTC
TGTTATGTTCCATACCGATGAGATTAGGAGATCTCGGTTCAGGTATGTAG
AACGGAACACACTCAATTTGATGTGTACCGAGAGATCCCTCCTGGGTAGG
AGTGACATGTAAGGGACAGGCACAGCCAATAAGCTGTTCTGTAAATGACA
AAAACGCCTCCGGATGTTGTGTGGGGGGGCGGGGTTCAGGAATACCAGGA
ACTTCAGGAACGTGCTAATACCTCTCTTCATAAATAGATCATTATTGAAA
AGAGATGTTCCTTCCATCCCTACGACAATATATTAACATCTTGATTTGTT
TTTCATAGTGTCTCACCTAATATCTTGTTCGTCTGCTATTGTTCTTGTTC
ATCGTTTTTTCCCCCTTTGCCTGCCTTGTTTACCTGCTTTGTCTTTTTGC
TGCTGTTTTCCGTTCGTTTTGTGTCCTTTGCTGCATCCACACACAAAAAA
TGAAATAAAAAATATTTACCAAAAGTCGTTGCTGACGCCGGATAGAGTGA
GCGCTAACCACGGCAACGCGCCGCCACGGTTGACCGGCGGAAAACGAGGA
CGAGACAGCGAGGTCGAGACGGACGCTCTGATGAACAACCAGGGCATTGA
GCCCCTCATGACAGTGGCCGAGGCCTTCTCCGATGAGCTGCAAACACTCC
GAGCAAATGAGCACTTCAAAGGCTCGGCGCGCGACGTCGAGGTCATGGCG
AGTATGATGAGGTGCGGCTACTTTTGGGAGAGACACCTGGCGAGGCATTC
TCGATTTCGCCAACTGGAAGTCTCGTTTGAAAGTCAACCCGGCCACAGTT
AGTTGAACTGTAGCTCTGAAATTCATGTGGCGACTCTGTTGTACCCATGT
CGAGGTTATACTGCTGTCTTAAAAATTATTTTTACAGTTACTCGGAATAT
CAGCAACATTTTATTAATAAGGGGGGTACTCTGTTTTGCATGCCTTAGTT
ATTGGGTTTTTTGGGAGCATGAAGAGGCAGGAGGGGATTGGGCGCGGCTG
GGTGTACGATAGGTTAGGCAGAAGAAAAATAAGTTCTGGGGTTGGAATGC
TCGAGTGGGGGGTTAGCAGCTGTTCCCAAACAAACGAACGAACTTTCATC
CGCAGCAACGGAAAAACGTGCAGCTCACCACATATGTATGTGTATGTGTG
TGTTTTGGTATTTATCTTCAGTAGTTTGCTGTAGGGTGGAGAATACCCTA
CATAGCAGAAAGGGGGGTATTCCCACAAACGTCTGAAGAGATCAACCCCC
TCCCCCCCCCTTAAAGGTATCGATATCTAAAACACTTGTGTAAACTACAG
GTGTCTGGCTCGCGGAATGGACGATACGGAGAGGCTGTTGTTGTTGGAAA
ATTTGAGAACCGCGAATAATGGGCCTTGGAAGGGTTCAGACACGCGCAAC
ACTCCGACGGTTGTGCCTCCCGGTCCTTGACAATCAAGTCCGATGGTCAA
ACACTGCCATGGAAAATGGTGGATTACTGACTAACTGTTGTTGTAGCTGA
CGGCAGTGCAGTACCAGTACAACCTGCGAGAGAGGGAGAGGGAGAGAGGG
AGGTGGCAGGGGGGGGGGCAGCGGGAGAGGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1599:926..6207-

>mRNA_H-paniculata_contig1599.3472.1 ID=mRNA_H-paniculata_contig1599.3472.1|Name=mRNA_H-paniculata_contig1599.3472.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1038bp|location=Sequence derived from alignment at H-paniculata_contig1599:926..6207- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAACAGAAGCAGCAGCAGCAGAACATCAAAGCGGGGTTGGACGCCTG
CTGGCAGCAGTATTGCGCATTGAGGCAAGGCGTGCTTGAGGCCGCTAATG
CTACCGGATACCCCATCTCTAAGATCAGTCAGCTGGATATGAAGCTCGAG
CAGATGGAACAGAAGCAGCAGCAGCAGAACATCAAAGCGGGGTTGGACGC
CTGCTGGCAGCAGTATTGCGCATTGAGGCAAGGCGTGCTTGAGGCCGCTA
ATGCTACCGGATACCCCATCTCTAAGATCAGTCAGCTGGATATGAAGCTC
GAGCAGTCGTTGCTGACGCCGGATAGAGTGAGCGCTAACCACGGCAACGC
GCCGCCACGGTTGACCGGCGGAAAACGAGGACGAGACAGCGAGGTCGAGA
CGGACGCTCTGATGAACAACCAGGGCATTGAGCCCCTCATGACAGTGGCC
GAGGCCTTCTCCGATGAGCTGCAAACACTCCGAGCAAATGAGCACTTCAA
AGGCTCGGCGCGCGACGTCGAGGTCATGGCGAGTATGATGAGTCGTTGCT
GACGCCGGATAGAGTGAGCGCTAACCACGGCAACGCGCCGCCACGGTTGA
CCGGCGGAAAACGAGGACGAGACAGCGAGGTCGAGACGGACGCTCTGATG
AACAACCAGGGCATTGAGCCCCTCATGACAGTGGCCGAGGCCTTCTCCGA
TGAGCTGCAAACACTCCGAGCAAATGAGCACTTCAAAGGCTCGGCGCGCG
ACGTCGAGGTCATGGCGAGTATGATGAGGTGTCTGGCTCGCGGAATGGAC
GATACGGAGAGGCTGTTGTTGTTGGAAAATTTGAGAACCGCGAATAATGG
GCCTTGGAAGGGTTCAGACACGCGCAACACTCCGACGGTTGTGCCTCCCG
GTCCTTGAGTGTCTGGCTCGCGGAATGGACGATACGGAGAGGCTGTTGTT
GTTGGAAAATTTGAGAACCGCGAATAATGGGCCTTGGAAGGGTTCAGACA
CGCGCAACACTCCGACGGTTGTGCCTCCCGGTCCTTGA
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