prot_H-paniculata_contig15925.3434.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig15925.3434.1
Unique Nameprot_H-paniculata_contig15925.3434.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length116
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15925.3434.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 98..114
e-value: 6.2E-4
score: 29.1
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 97..113
e-value: 3.6E-5
score: 23.6
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 98..114
score: 9.966
NoneNo IPR availableGENE3D4.10.60.10coord: 63..116
e-value: 1.1E-5
score: 27.1
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 91..115

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15925contigH-paniculata_contig15925:5405..5752 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15925.3434.1mRNA_H-paniculata_contig15925.3434.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig15925 5405..5752 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig15925.3434.1 ID=prot_H-paniculata_contig15925.3434.1|Name=mRNA_H-paniculata_contig15925.3434.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
MVLTHVYQLRDELTYMGEEISEERLSDIVLEGLTDAYDPIKYNAERDPDF
SIDEIEVTMRNMYANRTAREGLSRKSRGRESAMVATTPASKSSKFNGKCH
SCGKIGHVMRDCRSKI
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf