mRNA_H-paniculata_contig10526.342.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10526.342.1
Unique NamemRNA_H-paniculata_contig10526.342.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10526.342.1 vs. uniprot
Match: A0A6H5KT36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT36_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 3.410e-7
Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:   31 DNCTKHPHYAFEGDKARFCATHKEPGMVDVKHKRC 135
            ++C KH  YAF G+KA+FC++HK PGMVDV +KRC
Sbjct:   14 EHCLKHRMYAFPGEKAQFCSSHKMPGMVDVHNKRC 48
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BLAST of mRNA_H-paniculata_contig10526.342.1 vs. uniprot
Match: D7G0X0_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0X0_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 5.690e-6
Identity = 20/37 (54.05%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:   22 CEFDNCTKHPHYAFEGDKARFCATHKEPGMVDVKHKR 132
            CEF  CT+ P Y  +G +AR+C++HKE GM+DVK+ R
Sbjct:   10 CEFFECTRQPTYGQDGQRARYCSSHKEEGMIDVKNCR 46
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BLAST of mRNA_H-paniculata_contig10526.342.1 vs. uniprot
Match: A0A7S3Y6U3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6U3_HETAK)

HSP 1 Score: 47.8 bits (112), Expect = 7.610e-5
Identity = 20/35 (57.14%), Postives = 25/35 (71.43%), Query Frame = 1 
Query:   22 CEFDNCTKHPHYAFEGD-KARFCATHKEPGMVDVK 123
            CE   C K P + FEG+ +ARFCA H+ PGMVD+K
Sbjct:    6 CEEGGCNKQPSFTFEGEHRARFCAQHQRPGMVDLK 40
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BLAST of mRNA_H-paniculata_contig10526.342.1 vs. uniprot
Match: A0A6H5JKV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKV8_9PHAE)

HSP 1 Score: 48.9 bits (115), Expect = 9.460e-5
Identity = 20/38 (52.63%), Postives = 26/38 (68.42%), Query Frame = 1 
Query:   19 PCEFDNCTKHPHYAFEGDKARFCATHKEPGMVDVKHKR 132
            PCE + CT  P +   G K RFCA+HKE GMV++K +R
Sbjct:  296 PCEKEGCTVSPRFGDVGGKPRFCASHKESGMVNLKDRR 333
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10526.342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KT36_9PHAE3.410e-762.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0X0_ECTSI5.690e-654.05EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A7S3Y6U3_HETAK7.610e-557.14Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6H5JKV8_9PHAE9.460e-552.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10526contigH-paniculata_contig10526:7530..8471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size243
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928755.3328106-CDS-H-paniculata_contig10526:7529..76191622928755.3328106-CDS-H-paniculata_contig10526:7529..7619Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10526 7530..7619 -
1691480607.251516-CDS-H-paniculata_contig10526:7529..76191691480607.251516-CDS-H-paniculata_contig10526:7529..7619Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10526 7530..7619 -
1622928755.3452-CDS-H-paniculata_contig10526:8318..84711622928755.3452-CDS-H-paniculata_contig10526:8318..8471Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10526 8319..8471 -
1691480607.2718096-CDS-H-paniculata_contig10526:8318..84711691480607.2718096-CDS-H-paniculata_contig10526:8318..8471Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10526 8319..8471 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10526.342.1prot_H-paniculata_contig10526.342.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10526 7530..8471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10526.342.1

>prot_H-paniculata_contig10526.342.1 ID=prot_H-paniculata_contig10526.342.1|Name=mRNA_H-paniculata_contig10526.342.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=81bp
VDVHCRPCEFDNCTKHPHYAFEGDKARFCATHKEPGMVDVKHKRCHTTGC
REMRVYETPLKKSRFCMVHLEEWLSSKVRF*
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mRNA from alignment at H-paniculata_contig10526:7530..8471-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10526.342.1 ID=mRNA_H-paniculata_contig10526.342.1|Name=mRNA_H-paniculata_contig10526.342.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=942bp|location=Sequence derived from alignment at H-paniculata_contig10526:7530..8471- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGACGTACATTGTCGGCCGTGTGAGTTCGATAACTGCACCAAGCATCC
ACACTATGCGTTCGAGGGAGACAAGGCTCGCTTCTGCGCTACCCACAAGG
AACCCGGCATGGTTGACGTCAAGCACAAGCGGTGTCACACCACGGGGTGT
CGGGTAAGCGAGAGATGTCCTTCTTTTTTGTCTTAGTATTTACGGTTGGT
TGGTTGGTTGATTTACTGATTGGTTGGTTGCCCACAATAAATCTTCCCGC
GTGATTGTGTTAACAAAGGGAAACGCCAATCGTAATACCTTTGTAGAAGA
GTAAGTTTTGCGGTGTTTGTTGTTTTTTGTTTATTGTCATGATCCGTTGT
TATTGTCAGGATCCGTTGTTGTTGGTGGTGGTGGCGGTGATAGTGTGGGG
GGTTGCCCACAAGGAATCACCGCACGTAATTGTTGCGACAAAGGGAAACC
TCACTCGTATACCGTTGCAGAGGAGTACTTTCGTTGCTTCGCTTGGTTGC
CCAGAATAGAGGGGAACGTCATTCGCAGTTTCTCTGCAGAAAATAATTTT
TGGCGTTTTTCTGTACTTTTTCGTTATGGTCGTGATCCGTTGTCTTCGCA
TGGCTGGTTGGTTGGTTGGTTGCCCACAATAGAGTGGAACATCGTTCGCA
ATACATCCTGCAGATAATTTTTTTGGCGTATGTTCTATACTTTTTCGTTT
CTGTTATGATCATTTCGTCGCGGCGACACCCCTGAATAATAACGCTTTTG
AGTGACAAGTTGACGCTTTTGTGTTGACGAATTTCCGCATTTTCCGCATT
CAATTGTCGCACACCTCCGTCTTCCTTCGGTTTCATTATTTGTTCTTTTC
AGGAGATGAGAGTGTACGAGACGCCCTTGAAGAAGAGCCGGTTCTGCATG
GTGCATCTGGAAGAATGGCTCTCGTCGAAGGTGCGGTTCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig10526:7530..8471-

>mRNA_H-paniculata_contig10526.342.1 ID=mRNA_H-paniculata_contig10526.342.1|Name=mRNA_H-paniculata_contig10526.342.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at H-paniculata_contig10526:7530..8471- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGACGTACATTGTCGGCCGTGTGAGTTCGATAACTGCACCAAGCATCC
ACACTATGCGTTCGAGGGAGACAAGGCTCGCTTCTGCGCTACCCACAAGG
AACCCGGCATGGTTGACGTCAAGCACAAGCGGTGTCACACCACGGGGTGT
CGGGTGGACGTACATTGTCGGCCGTGTGAGTTCGATAACTGCACCAAGCA
TCCACACTATGCGTTCGAGGGAGACAAGGCTCGCTTCTGCGCTACCCACA
AGGAACCCGGCATGGTTGACGTCAAGCACAAGCGGTGTCACACCACGGGG
TGTCGGGAGATGAGAGTGTACGAGACGCCCTTGAAGAAGAGCCGGTTCTG
CATGGTGCATCTGGAAGAATGGCTCTCGTCGAAGGTGCGGTTCTGAGAGA
TGAGAGTGTACGAGACGCCCTTGAAGAAGAGCCGGTTCTGCATGGTGCAT
CTGGAAGAATGGCTCTCGTCGAAGGTGCGGTTCTGA
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