mRNA_H-paniculata_contig159.3416.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig159.3416.1
Unique NamemRNA_H-paniculata_contig159.3416.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig159.3416.1 vs. uniprot
Match: D7FJ05_ECTSI (Tyrosine-protein phosphatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ05_ECTSI)

HSP 1 Score: 308 bits (789), Expect = 9.480e-104
Identity = 147/165 (89.09%), Postives = 157/165 (95.15%), Query Frame = 3
Query:  105 MFFPPVSFGLVEEGLYRSALPTEINYPFLERLGLKTIIYLYPDEEIDAQLMTFLEDHDINLITLGEHDDKRSKSWAPVGEETVLAALERIVDSSHYPLLITDGTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRVQNEQFIELFDTDLVHLPPEAPLFL 599
            MFFPPVSFGLVEEGLYRSALP EINYPFLERLGLKTIIYLYPD++IDAQL++FLED D+ L++LGEHDDKR+KSWAPVGEE VLAALERIVDS HYP+LIT  TGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRVQNEQFIELFDTDLVHLPPEAP F+
Sbjct:    1 MFFPPVSFGLVEEGLYRSALPNEINYPFLERLGLKTIIYLYPDDDIDAQLVSFLEDQDVTLVSLGEHDDKRNKSWAPVGEEIVLAALERIVDSVHYPVLITCNTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRVQNEQFIELFDTDLVHLPPEAPRFV 165          
BLAST of mRNA_H-paniculata_contig159.3416.1 vs. uniprot
Match: A0A835YIK6_9STRA (Protein-tyrosine phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIK6_9STRA)

HSP 1 Score: 251 bits (642), Expect = 2.520e-81
Identity = 122/171 (71.35%), Postives = 142/171 (83.04%), Query Frame = 3
Query:  105 MFFPPVSFGLVEEGLYRSALPTEINYPFLERLGLKTIIYLYPDEEIDAQLMTFLEDHDINLITLGEHDDK-----RSKSWAPVGEETVLAALERIVDSSHYPLLITDGTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRVQNEQFIELFDTDLVHLPPEAPLFLL 602
            MFFPPV+F  VEEGLYRS LPTEINYPFLERL LKTIIYL+PDE+IDAQL +FLED ++ L+ LGE D+      +S++   + EETV+ AL  +VD++HYPLL+  GTGKHRTGTVVACLRKLQRWNL+SIFEEYR FTKHKVRVQNEQFIELFDTDLV +PP  P FL+
Sbjct:    1 MFFPPVNFAPVEEGLYRSGLPTEINYPFLERLKLKTIIYLFPDEDIDAQLESFLEDQEVKLVCLGEQDESAQLANKSRNNHMIAEETVIEALSYLVDTTHYPLLVMCGTGKHRTGTVVACLRKLQRWNLSSIFEEYRHFTKHKVRVQNEQFIELFDTDLVRIPPRPPRFLV 171          
BLAST of mRNA_H-paniculata_contig159.3416.1 vs. uniprot
Match: A0A7S2BN42_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BN42_9STRA)

HSP 1 Score: 201 bits (510), Expect = 1.020e-60
Identity = 103/176 (58.52%), Postives = 126/176 (71.59%), Query Frame = 3
Query:  105 MFFPPVSFGLVEEGLYRSALPTEINYPFLERLGLKTIIYL-YPD--EEIDAQLMTFLEDHDINLITLGEHDDKRS--------KSWAPVGEETVLAALERIVDSSHYPLLITDGTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRVQNEQFIELFDTDLVHLPPEAPLFL 599
            M FPP +FG+VE+ L+R  +P +IN PFLE+L L TI+ L +P   E+ID  L+ FL+D+ + L+ L E DD  +        K+  PV E+ VL AL  +VD++ YP+LITD  GKHRTGTVVACLRKLQRWNLTSIFEEYRRF  HK R QNEQFIELFD D VH+PP AP FL
Sbjct:   10 MLFPPTNFGVVEQDLFRGTIPNQINTPFLEKLNLHTIVLLEHPGDYEDIDPMLLAFLKDNCVELVRLREDDDSGAREMQLSGPKTSQPVSEDVVLRALREVVDATKYPILITDIYGKHRTGTVVACLRKLQRWNLTSIFEEYRRFAGHKRRPQNEQFIELFDIDQVHVPPRAPAFL 185          
BLAST of mRNA_H-paniculata_contig159.3416.1 vs. uniprot
Match: A0A485KRG3_9STRA (Aste57867_10594 protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485KRG3_9STRA)

HSP 1 Score: 199 bits (506), Expect = 1.030e-60
Identity = 96/163 (58.90%), Postives = 126/163 (77.30%), Query Frame = 3
Query:  108 FFPPVSFGLVEEGLYRSALPTEINYPFLERLGLKTIIYLYPDEEIDAQLMTFLEDHDINLITLGEHD--DKRSKSWAPVGEETVLAALERIVDSSHYPLLITDGTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRVQNEQFIELFDTDLVHLPPEAP 590
            F PPV++G++EE LYRS +P E+N+PFLERL L+ I+YL P EE +AQL++F+E+ +I LI LG +   + R K+W P+ EETVLAAL+ I+D  +YPL +T   G+ RTG VV CLRK+Q+W+L+SIFEEYRRF   KVR+QNEQFIELFDTDLV +P   P
Sbjct:    4 FIPPVNYGMIEEDLYRSGIPNELNFPFLERLNLRKIVYLAP-EEPNAQLLSFVEEQEIELIVLGGNTKLENRRKAWEPMSEETVLAALDIILDRGNYPLFLTCHLGRDRTGAVVGCLRKIQQWHLSSIFEEYRRFAGSKVRLQNEQFIELFDTDLVTIPSNPP 165          
BLAST of mRNA_H-paniculata_contig159.3416.1 vs. uniprot
Match: A0A1V9YB19_9STRA (Tyrosine phosphatase n=9 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9YB19_9STRA)

HSP 1 Score: 197 bits (502), Expect = 4.420e-60
Identity = 95/163 (58.28%), Postives = 126/163 (77.30%), Query Frame = 3
Query:  108 FFPPVSFGLVEEGLYRSALPTEINYPFLERLGLKTIIYLYPDEEIDAQLMTFLEDHDINLITLGEHD--DKRSKSWAPVGEETVLAALERIVDSSHYPLLITDGTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRVQNEQFIELFDTDLVHLPPEAP 590
            F PPV++G++EE LYRS +P E+N+PFLERL L+ I+YL P EE + QL++F+E+ +I L+ LG +   + R K+W P+ EETVLAAL+ I+D S+YPL +T   G+ RTG VV CLRK+Q+W+L+SIFEEYRRF   KVR+QNEQFIELFDTDLV +P   P
Sbjct:    4 FIPPVNYGMIEEDLYRSGIPNELNFPFLERLNLRKIVYLAP-EEPNPQLLSFVEEQEIELVVLGCNTKLESRRKAWEPMSEETVLAALDIILDRSNYPLFLTCHLGRDRTGAVVGCLRKIQQWHLSSIFEEYRRFAGSKVRLQNEQFIELFDTDLVTIPTNPP 165          
BLAST of mRNA_H-paniculata_contig159.3416.1 vs. uniprot
Match: A0A3R7JKP5_9STRA (Tyrosine-protein phosphatase domain-containing protein n=2 Tax=Oomycota TaxID=4762 RepID=A0A3R7JKP5_9STRA)

HSP 1 Score: 195 bits (496), Expect = 6.550e-59
Identity = 99/170 (58.24%), Postives = 127/170 (74.71%), Query Frame = 3
Query:   96 SLLMFFPPVSFGLVEEGLYRSALPTEINYPFLERLGLKTIIYLYPDEEIDAQLMTFLEDHDINLITLGEHD--DKRSKSWAPVGEETVLAALERIVDSSHYPLLITDGTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRVQNEQFIELFDTDLVHLPPEAPLFL 599
            S+  F PPV++G++EE LYRS  P E+N+PFLERL L+TIIYL   EE + Q  +F+E+ +I LI LG +   + R K+W P+ EETVLAAL+ I+D S+YPL IT   G+ RTG VV CLRK+Q+W+L+SIFEEYRRF   KVR+QNEQFIELFDTDLV +P   P +L
Sbjct:   23 SMSYFIPPVNYGMIEEDLYRSGQPNELNFPFLERLNLRTIIYLAL-EEPNPQFQSFVEEQEIQLIFLGGNTRMESRRKAWEPLSEETVLAALDIILDRSNYPLYITCHLGRDRTGAVVGCLRKIQQWHLSSIFEEYRRFAGSKVRLQNEQFIELFDTDLVTIPVNPPSWL 191          
BLAST of mRNA_H-paniculata_contig159.3416.1 vs. uniprot
Match: M1VJ97_CYAM1 (Tyrosine-protein phosphatase domain-containing protein n=2 Tax=Cyanidiaceae TaxID=265316 RepID=M1VJ97_CYAM1)

HSP 1 Score: 194 bits (493), Expect = 6.870e-59
Identity = 91/164 (55.49%), Postives = 119/164 (72.56%), Query Frame = 3
Query:  108 FFPPVSFGLVEEGLYRSALPTEINYPFLERLGLKTIIYLYPDEEIDAQLMTFLEDHDINLITLGEHDDKRSKSWAPVGEETVLAALERIVDSSHYPLLITDGTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRVQNEQFIELFDTDLVHLPPEAPLFL 599
            F PP++F  VEE LYRS +P E+NYPFLE+L L+ ++YL PDE +  Q + FL+DHDI L+ +G   D+    W P+ EE VLAAL+ I+D+ +YPL +    G+HRTGTV+ CLRKLQ+WNLTS+ EEYRR+   KVR+ NEQFIELFD DLV +P   P +L
Sbjct:    4 FIPPINFSWVEEDLYRSGVPNELNYPFLEKLNLRKVLYLSPDE-LPPQFLNFLDDHDIELVPVGWDSDQTP--WMPISEEVVLAALDVILDTENYPLHVMCNLGRHRTGTVIGCLRKLQQWNLTSVLEEYRRYVGGKVRLLNEQFIELFDVDLVRIPENPPAWL 164          
BLAST of mRNA_H-paniculata_contig159.3416.1 vs. uniprot
Match: M4C493_HYAAE (Tyrosine-protein phosphatase domain-containing protein n=18 Tax=Oomycota TaxID=4762 RepID=M4C493_HYAAE)

HSP 1 Score: 194 bits (492), Expect = 1.340e-58
Identity = 97/163 (59.51%), Postives = 124/163 (76.07%), Query Frame = 3
Query:  108 FFPPVSFGLVEEGLYRSALPTEINYPFLERLGLKTIIYLYPDEEIDAQLMTFLEDHDINLITLGEHD--DKRSKSWAPVGEETVLAALERIVDSSHYPLLITDGTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRVQNEQFIELFDTDLVHLPPEAP 590
            F PPV++G+VEE LYRS  P E+N+PFLERL L+TIIYL   EE + Q  +F+E+ +I L+ LG +   + R KSW P+ EETVLAAL+ I+D S+YPL +T   G+ RTG VV CLRK+Q W+L+SIFEEYRRF   KVR+QNEQFIELFDTDLV +P ++P
Sbjct:    4 FIPPVNYGMVEEDLYRSGQPNELNFPFLERLNLRTIIYLAL-EEPNPQFQSFVEEQEIQLVFLGGNTRMESRRKSWEPLSEETVLAALDIILDRSNYPLYLTCHLGRDRTGAVVGCLRKIQGWHLSSIFEEYRRFAGSKVRLQNEQFIELFDTDLVTIPAKSP 165          
BLAST of mRNA_H-paniculata_contig159.3416.1 vs. uniprot
Match: A0A0L0HGC9_SPIPD (Tyrosine-protein phosphatase domain-containing protein n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0HGC9_SPIPD)

HSP 1 Score: 193 bits (490), Expect = 3.830e-58
Identity = 94/164 (57.32%), Postives = 121/164 (73.78%), Query Frame = 3
Query:  108 FFPPVSFGLVEEGLYRSALPTEINYPFLERLGLKTIIYLYPDEEIDAQLMTFLEDHDINLITLGEHDDKRSKSWAPVGEETVLAALERIVDSSHYPLLITDGTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRVQNEQFIELFDTDLVHLPPEAPLFL 599
            + PP++FG+VEE LYRS  P E+N+PFLE+LGLKT+I+L P EE + + + F+ED +I    LG +    + +W P+ EE VL ALE I+D   YP+++    G+HRTGTV+ CLRKLQRWNLTSIFEEYRR+   KVRV NEQFIELFDTDLV +P   PL+L
Sbjct:   25 YIPPLNFGMVEEDLYRSGQPNELNFPFLEKLGLKTVIFLAP-EEPNQRFLNFIEDQEIQFHHLGINVS--ANAWDPISEEVVLEALELILDPKSYPMIVMCNLGRHRTGTVIGCLRKLQRWNLTSIFEEYRRYAGPKVRVLNEQFIELFDTDLVRVPINHPLWL 185          
BLAST of mRNA_H-paniculata_contig159.3416.1 vs. uniprot
Match: F0ZWN6_DICPU (Tyrosine-protein phosphatase domain-containing protein n=4 Tax=Dictyostelia TaxID=33083 RepID=F0ZWN6_DICPU)

HSP 1 Score: 190 bits (483), Expect = 2.450e-57
Identity = 94/162 (58.02%), Postives = 116/162 (71.60%), Query Frame = 3
Query:  114 PPVSFGLVEEGLYRSALPTEINYPFLERLGLKTIIYLYPDEEIDAQLMTFLEDHDINLITLGEHDDKRSKSWAPVGEETVLAALERIVDSSHYPLLITDGTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRVQNEQFIELFDTDLVHLPPEAPLFL 599
            PP++FG+V + LYRS  P E+N+PFLE+L LK II+L PD+    Q   F+ED DI LI LG   D     W P+ EE V++AL+ I++   YPL++    G+HRTGTV+ CLRKLQRWNLTSIFEEYRRF   KVR+ NEQFIELFDTDLV +P  AP FL
Sbjct:    6 PPLNFGMVADDLYRSGQPNELNFPFLEKLQLKKIIFLAPDDP-SQQFQNFVEDQDIELIHLGM--DTHQNPWNPISEEIVISALKIILNMESYPLMVMCNLGRHRTGTVIGCLRKLQRWNLTSIFEEYRRFAGSKVRLLNEQFIELFDTDLVGIPDNAPKFL 164          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig159.3416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ05_ECTSI9.480e-10489.09Tyrosine-protein phosphatase domain-containing pro... [more]
A0A835YIK6_9STRA2.520e-8171.35Protein-tyrosine phosphatase n=1 Tax=Tribonema min... [more]
A0A7S2BN42_9STRA1.020e-6058.52Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A485KRG3_9STRA1.030e-6058.90Aste57867_10594 protein n=2 Tax=Aphanomyces TaxID=... [more]
A0A1V9YB19_9STRA4.420e-6058.28Tyrosine phosphatase n=9 Tax=Saprolegniaceae TaxID... [more]
A0A3R7JKP5_9STRA6.550e-5958.24Tyrosine-protein phosphatase domain-containing pro... [more]
M1VJ97_CYAM16.870e-5955.49Tyrosine-protein phosphatase domain-containing pro... [more]
M4C493_HYAAE1.340e-5859.51Tyrosine-protein phosphatase domain-containing pro... [more]
A0A0L0HGC9_SPIPD3.830e-5857.32Tyrosine-protein phosphatase domain-containing pro... [more]
F0ZWN6_DICPU2.450e-5758.02Tyrosine-protein phosphatase domain-containing pro... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig159contigH-paniculata_contig159:23813..26865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score309.7
Seed ortholog evalue8.5e-82
Seed eggNOG ortholog2880.D7FJ05
Preferred nameOCA1
KEGG koko:K18043
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004721,GO:0004725,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0033554,GO:0034599,GO:0035335,GO:0036211,GO:0042221,GO:0042578,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:0070887,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.protein tyrosine phosphatase activity
EggNOG OGsCOG2365@1,KOG1572@2759
Ec32 ortholog descriptionProtein-tyrosine phosphatase, SIW14-like
Ec32 orthologEc-07_004920.1
EC3.1.3.48
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Exons4
Model size857
Cds size507
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig159.3416.1prot_H-paniculata_contig159.3416.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig159 24059..26761 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929268.4281197-UTR-H-paniculata_contig159:23812..240581622929268.4281197-UTR-H-paniculata_contig159:23812..24058Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig159 23813..24058 -
1691480794.440711-UTR-H-paniculata_contig159:23812..240581691480794.440711-UTR-H-paniculata_contig159:23812..24058Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig159 23813..24058 -
1622929268.5192838-UTR-H-paniculata_contig159:26761..268651622929268.5192838-UTR-H-paniculata_contig159:26761..26865Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig159 26762..26865 -
1691480794.4937878-UTR-H-paniculata_contig159:26761..268651691480794.4937878-UTR-H-paniculata_contig159:26761..26865Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig159 26762..26865 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929268.4612641-CDS-H-paniculata_contig159:24058..241511622929268.4612641-CDS-H-paniculata_contig159:24058..24151Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig159 24059..24151 -
1691480794.4547632-CDS-H-paniculata_contig159:24058..241511691480794.4547632-CDS-H-paniculata_contig159:24058..24151Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig159 24059..24151 -
1622929268.475537-CDS-H-paniculata_contig159:24470..245561622929268.475537-CDS-H-paniculata_contig159:24470..24556Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig159 24471..24556 -
1691480794.464349-CDS-H-paniculata_contig159:24470..245561691480794.464349-CDS-H-paniculata_contig159:24470..24556Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig159 24471..24556 -
1622929268.4883046-CDS-H-paniculata_contig159:26002..261811622929268.4883046-CDS-H-paniculata_contig159:26002..26181Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig159 26003..26181 -
1691480794.4744315-CDS-H-paniculata_contig159:26002..261811691480794.4744315-CDS-H-paniculata_contig159:26002..26181Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig159 26003..26181 -
1622929268.5025935-CDS-H-paniculata_contig159:26612..267611622929268.5025935-CDS-H-paniculata_contig159:26612..26761Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig159 26613..26761 -
1691480794.4848685-CDS-H-paniculata_contig159:26612..267611691480794.4848685-CDS-H-paniculata_contig159:26612..26761Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig159 26613..26761 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig159.3416.1

>prot_H-paniculata_contig159.3416.1 ID=prot_H-paniculata_contig159.3416.1|Name=mRNA_H-paniculata_contig159.3416.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=169bp
MFFPPVSFGLVEEGLYRSALPTEINYPFLERLGLKTIIYLYPDEEIDAQL
MTFLEDHDINLITLGEHDDKRSKSWAPVGEETVLAALERIVDSSHYPLLI
TDGTGKHRTGTVVACLRKLQRWNLTSIFEEYRRFTKHKVRVQNEQFIELF
DTDLVHLPPEAPLFLLNR*
back to top

mRNA from alignment at H-paniculata_contig159:23813..26865-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig159.3416.1 ID=mRNA_H-paniculata_contig159.3416.1|Name=mRNA_H-paniculata_contig159.3416.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3053bp|location=Sequence derived from alignment at H-paniculata_contig159:23813..26865- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGAGCCCCTTCTTGACAAATCCTTTGCTCCCAGGAAGCGAACGGCTGG AAAGCCTTTACCATAAAGCAATTCGAAGCAGCGTCCAAAGTCTCATCACT GCTCATGTTCTTTCCACCTGTCAGCTTTGGTCTGGTAGAAGAAGGACTTT ATAGGTCCGCCCTCCCCACCGAGATCAACTATCCTTTTTTGGAACGACTC GGGCTGAAGACCATCATCTACCTTTACCCGGACGAGGAGATTGACGCTCA GTTGTAAGTTCCTCCTCTATCTGCTGGCGTGTCCATTCCTGTATGTAATG TTGGTATTTTGCTTGTTGTTCTGTGCGATGTATATGTTGCTAAATGGGCA AAGGCTTCCTTCTTGATGAAGCCTAGACTGTTATCTGCACGCACTTGTTT ATCATGTGCGATGGAGTAAGACTAGCAGTAGAGCCATTGTTACGCTCGTA CTCATTCGATCAATAATCCGTGACCCACGCACTGGCTCGGTGCGCTCGTA GGTAGGCAGCAGGTCACAAGATTTTGTGTCTTGAATTTTACTTGCGTACA GAACCCTATATGTTGTTCCGAAACGACCGTTGCCACATCGATCAGAGAGA TCGATTTAGAGTTGCGGCACGGATGGTTGATGCATACTGTGAGTCATTAG TACACGAACGAATATTTTTCGCACCCGATGACAGAATGACCTTTCTCGAG GATCACGATATCAACCTAATCACGCTGGGTGAACACGATGACAAGCGGAG CAAAAGTTGGGCTCCTGTGGGAGAGGAGACCGTGCTGGCCGCGCTGGAGC GCATCGTAGACTCGAGCCATTACCCGCTCCTCATCACCGACGGCACGGGC AAGCACAGAACGGGTAAGCGTTGAACCCTTCAGACCAGCAAGCCGACACT GTGAAAGAGTTCGACGCGTGGTGTTTGACAGTCCTGCATCGAAAAGGCGG GAGGGGGGGGCTTTCGAATTTCGACGAACAGAATCGCGTTGGTGAGGTTA AGATCACACCCGTATGTCGACTAACAGATGACAAACAGTCCAGCGGGATT TCGACGTATTTCATGTGAATTTTGAATATCAGATGTCGACGCTATCTATA AAAGCGTATTGGCCTTTTTTATAGTATATGTTTTCACGTACGTCAACGGC TGGCACAGTATCCGCAGCGCCGTGTGCCTGATGTAGAAGTACAGCGATAC ACACATTGGTTTCATCGAGCGGTGGCGGCCAGCTGGACAGCGCGAACGGC ATGGTGCCATAGAGTTGCGCCCGGCAAAAAAAGAAACAGACATTAGTGCT GCATACAGTATAGTTCGTCTACGAATGCATGCAGCATTTCCGTGGCACTC AATGACGAGAGAGTGATAGAGCTAGCAGGCACCAGCGTATCCCGACAGTT CTACAGCAGACGATAGCCGGTGGTGTGTGGTGTCCTGTGATGAGTAACCG TACCCGCAGCACAGCAGCAGGCGGTCTGCCATACTCATGGCAAAGTGGAC ATGGCGACATCTAATACCTATCGTGTTTGGTAAGTAGGCGTTGGGATTCC TTTAACAAAATTGTTTCTTCCTGTCAGTCTTTCTTCTTTTTTCCAGGTGT AAGGGAGCGAAGTCCTGCAAGTATGTACGCAACGTGACCCCTCACTGTGC AGTCGTGCGGGACGGGGGGACTCCAATTAAAGATCGACTTCAAATGGCAC ACAGGATGATAGGTTTATCTTTAGTGCATCACCCAGGCACAACCGTTGCG ATGATGCTTGACTGCATAGATCGATGCTGCTACCAACCCGCACCAACACA CTGGGGCGCTAAGAATCATCTGTCATTGTAATACACAATTCTCCATATAT AGCCGAGTCCCATAGCGCAGCGTGCGATTCTCGATGTCTGCCGATGTAGC CCTGCCGACGAAAATGAAATTGCAAACAAACTGTTTCCTTGGAGATCATC CTAGAATAGGTCAAGGTCGTAGTCCAGTAGTCCCGCTTGGCGTTATTCGG CACTCTTGATTCTGAGAAAAAAACTCCGCCCCAGCACGAGTGATCAATCG ACTGCTCTTCTGTATACATAGCGCTGAAACTGTTTTTACTATGAAACATG TATGTCCCCGACGAGAGCAGAGAGTCCATTCCGCAACCCAGGACACCCGA CATCGCGGCATTAGCGTTACTCGATTGCCTCGTTCAACACCCTTTGTGGA TGTCGTTGTCTCTACCCCGTCTCGCTGAACCGATGTATCTTCTAACCTTG TCCAAGATGTGGTAACGGAGACACAGTCGCGACCAACCTAGTTCGTTCTT GATTCGCAGGAACCGTCGTCGCGTGCTTGAGGAAGCTGCAAAGATGGAAT TTAACGTCCATATTCGAAGAATACCGACGATTCACGAAGCACAAGGTAAG TTATATCAACGACTCTTTCATGGTATGAATGCAAAATGTCAAAATAAGGT GTATCGATATTGTACCCGAAGTTTCTCAGGACGGCGTGTCGCGCCAGCGC ACTCTCTGGGCTATTCGGACGCGCCATCCGATGACTATTGGTGCCCATTC AAGCACGGCACTGTCGTTATACGTGCATGCATTGCTTGCTTGATTGTTGG ATCATTCAAGAAGTCGCTAGTCGGGCCGCTGAACAATTCGTAAAGGTATT ACGCATACCAGAGTACCAGACAATCCTGCCGCTCGTTCTGTAATTTCGCC CTGTTCGCGTACAGGTCAGGGTGCAGAACGAGCAATTCATCGAGCTTTTT GATACGGACCTTGTCCACCTGCCGCCGGAGGCCCCACTATTCCTGTTGAA CCGATGACTCAGCGCCGCGACAGCGGGCGGCACAAGAAGTAATCGTCGAA GGCACGTCTTGGCTAGGACAATCAGCCAGAAGTAAGTTGAGGCTGCTTTG GAATGCATCGATGTCGCGCCGTTTGGCATTACGCATTCAGTTCCTCCTGG GTCAAACATTTAGCTCTGACTTGAATTTTTTTTCTGTGAAATATTATCCT CAATGGCCCCAACAACAGGGGCAGGTATGTTTCTAAAATTCGTGAGCCGT TGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig159:23813..26865-

>mRNA_H-paniculata_contig159.3416.1 ID=mRNA_H-paniculata_contig159.3416.1|Name=mRNA_H-paniculata_contig159.3416.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1014bp|location=Sequence derived from alignment at H-paniculata_contig159:23813..26865- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCTTTCCACCTGTCAGCTTTGGTCTGGTAGAAGAAGGACTTTATAG
GTCCGCCCTCCCCACCGAGATCAACTATCCTTTTTTGGAACGACTCGGGC
TGAAGACCATCATCTACCTTTACCCGGACGAGGAGATTGACGCTCAGTTA
TGTTCTTTCCACCTGTCAGCTTTGGTCTGGTAGAAGAAGGACTTTATAGG
TCCGCCCTCCCCACCGAGATCAACTATCCTTTTTTGGAACGACTCGGGCT
GAAGACCATCATCTACCTTTACCCGGACGAGGAGATTGACGCTCAGTTAA
TGACCTTTCTCGAGGATCACGATATCAACCTAATCACGCTGGGTGAACAC
GATGACAAGCGGAGCAAAAGTTGGGCTCCTGTGGGAGAGGAGACCGTGCT
GGCCGCGCTGGAGCGCATCGTAGACTCGAGCCATTACCCGCTCCTCATCA
CCGACGGCACGGGCAAGCACAGAACGGAATGACCTTTCTCGAGGATCACG
ATATCAACCTAATCACGCTGGGTGAACACGATGACAAGCGGAGCAAAAGT
TGGGCTCCTGTGGGAGAGGAGACCGTGCTGGCCGCGCTGGAGCGCATCGT
AGACTCGAGCCATTACCCGCTCCTCATCACCGACGGCACGGGCAAGCACA
GAACGGGAACCGTCGTCGCGTGCTTGAGGAAGCTGCAAAGATGGAATTTA
ACGTCCATATTCGAAGAATACCGACGATTCACGAAGCACAAGGAACCGTC
GTCGCGTGCTTGAGGAAGCTGCAAAGATGGAATTTAACGTCCATATTCGA
AGAATACCGACGATTCACGAAGCACAAGGTCAGGGTGCAGAACGAGCAAT
TCATCGAGCTTTTTGATACGGACCTTGTCCACCTGCCGCCGGAGGCCCCA
CTATTCCTGTTGAACCGATGAGTCAGGGTGCAGAACGAGCAATTCATCGA
GCTTTTTGATACGGACCTTGTCCACCTGCCGCCGGAGGCCCCACTATTCC
TGTTGAACCGATGA
back to top