mRNA_H-paniculata_contig1052.340.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1052.340.1
Unique NamemRNA_H-paniculata_contig1052.340.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1052.340.1 vs. uniprot
Match: D7FMS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 2.420e-19
Identity = 47/99 (47.47%), Postives = 65/99 (65.66%), Query Frame = 2 
Query:  101 VQNPLQSNADILRRVAEYAHDTQFLFFALVSRGWRIGWGSNRPRITRAVTSDSTISQLRYSFDSGLTRSAVICKAIAGFGNLSLLIWARMFDCPWRSTT 397
            ++  L +  DI+  V E+  D Q+LFFA VSRGWR  WG  RP +T+A+T+D+++SQL  SF+ GL R+A +C+ +AG G L LL  AR   CPW   T
Sbjct:    1 MEKQLFAAVDIVSTVGEFVDDNQYLFFASVSRGWRDVWGK-RPTVTKALTADTSVSQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMGCPWNENT 98
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BLAST of mRNA_H-paniculata_contig1052.340.1 vs. uniprot
Match: A0A6H5KPZ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ6_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.210e-16
Identity = 49/96 (51.04%), Postives = 58/96 (60.42%), Query Frame = 2 
Query:  113 LQSNADILRRVAEYAHDTQFLFFALVSRGWRIGWGSNRPRITRAVTSDSTISQLRYSFDSGLTRSAV-ICKAIAGFGNLSLLIWARMFDCPWRSTT 397
            L  N D+LR +  +  + QFLFFA VSR WR  WG  RP +T  VT DS++SQLRYSF+ GL R    +C AIA  GNL LL  AR   C W   T
Sbjct:   57 LADNVDLLRSIVRFVAEKQFLFFAPVSRAWREAWGC-RPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCAWNGLT 151
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BLAST of mRNA_H-paniculata_contig1052.340.1 vs. uniprot
Match: D8LDD9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDD9_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 1.030e-15
Identity = 47/98 (47.96%), Postives = 58/98 (59.18%), Query Frame = 2 
Query:  107 NPLQSNADILRRVAEYAHDTQFLFFALVSRGWRIGWGSNRPRITRAVTSDSTISQLRYSFDSGLTRSAV-ICKAIAGFGNLSLLIWARMFDCPWRSTT 397
            NP Q+ AD++   +E+ HD QFLFFA VSR WR  W   RP  TRA+T D++ SQLR+S D GL+     +C AIA  G L LL  AR     W   T
Sbjct:    3 NPFQATADVISHASEFVHDDQFLFFASVSRAWRGAW-RGRPTSTRAITPDTSPSQLRHSVDCGLSPGGTAVCTAIASLGRLDLLRAARALGFRWDKMT 99
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1052.340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FMS7_ECTSI2.420e-1947.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPZ6_9PHAE1.210e-1651.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LDD9_ECTSI1.030e-1547.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1052contigH-paniculata_contig1052:27699..29666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.8
Seed ortholog evalue1.3e-11
Seed eggNOG ortholog2880.D7FJY0
KEGG koko:K06052
KEGG Pathwayko01522,ko04330,ko04371,ko04658,ko04668,ko05165,ko05200,ko05224,map01522,map04330,map04371,map04658,map04668,map05165,map05200,map05224
Hectar predicted targeting categoryother localisation
EggNOG OGs2AMK4@1,2RZCC@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04090
Exons1
Model size1968
Cds size1206
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1052.340.1prot_H-paniculata_contig1052.340.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1052 27775..28980 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928754.2130697-UTR-H-paniculata_contig1052:27698..277741622928754.2130697-UTR-H-paniculata_contig1052:27698..27774Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1052 27699..27774 +
1691480606.9782083-UTR-H-paniculata_contig1052:27698..277741691480606.9782083-UTR-H-paniculata_contig1052:27698..27774Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1052 27699..27774 +
1622928754.9793017-UTR-H-paniculata_contig1052:28980..296661622928754.9793017-UTR-H-paniculata_contig1052:28980..29666Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1052 28981..29666 +
1691480607.0084054-UTR-H-paniculata_contig1052:28980..296661691480607.0084054-UTR-H-paniculata_contig1052:28980..29666Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1052 28981..29666 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928754.9632654-CDS-H-paniculata_contig1052:27774..289801622928754.9632654-CDS-H-paniculata_contig1052:27774..28980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1052 27775..28980 +
1691480606.9970257-CDS-H-paniculata_contig1052:27774..289801691480606.9970257-CDS-H-paniculata_contig1052:27774..28980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1052 27775..28980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1052.340.1

>prot_H-paniculata_contig1052.340.1 ID=prot_H-paniculata_contig1052.340.1|Name=mRNA_H-paniculata_contig1052.340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=402bp
MASLSPFVVQNPLQSNADILRRVAEYAHDTQFLFFALVSRGWRIGWGSNR
PRITRAVTSDSTISQLRYSFDSGLTRSAVICKAIAGFGNLSLLIWARMFD
CPWRSTTCSAAASGGHLEVLKWCRANGCSWDTTTCSRAARRGHLKVLQWA
RQNGCRWDAETCSSASAGGHLKILQWAREHSCIWDSRTCTDAAKGGHLHI
LQWARENGWPWNTWTCREAARHGHLDVIKWAKEVGVDWYEHTCLGAAEGG
HLDILSWARANGCSWDQRTFEAAAKAGNLQVLRWLRLNGCPWDMHACTGA
AAAGHLHVLQWLRLNGCPWDEQTCAWAAARGQLDMLRWARMEGAPWDELT
CLAAAFRGELNTLKWAREHGCPWTAAVCNAARVGGHYGVLVWARANDCPE
Q*
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mRNA from alignment at H-paniculata_contig1052:27699..29666+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1052.340.1 ID=mRNA_H-paniculata_contig1052.340.1|Name=mRNA_H-paniculata_contig1052.340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1968bp|location=Sequence derived from alignment at H-paniculata_contig1052:27699..29666+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATAAACTCATCTTCGTCATTTCGCCCGTTTTGCCTTTGATTTTCCTTGC
CCTCCAAGAAGCTGTACCGACAGCAAATGGCCAGCCTTTCGCCTTTCGTC
GTGCAAAATCCATTGCAAAGCAACGCAGATATCCTGAGGAGGGTGGCCGA
GTATGCTCACGACACGCAGTTCCTGTTTTTTGCACTGGTGTCCAGAGGCT
GGAGAATTGGATGGGGGTCAAATCGGCCGAGAATCACCAGGGCCGTGACA
TCTGACTCCACGATTTCTCAGCTACGGTACAGCTTCGACTCCGGGCTCAC
ACGCAGCGCCGTGATATGCAAGGCCATCGCAGGCTTCGGTAATTTATCTC
TCCTAATCTGGGCGAGGATGTTCGACTGTCCCTGGAGGTCTACAACGTGC
AGCGCCGCAGCCTCAGGGGGGCATCTAGAGGTGTTGAAGTGGTGCAGGGC
GAACGGCTGTTCCTGGGACACAACGACATGCAGTCGGGCTGCCCGCAGGG
GACACCTCAAAGTTCTTCAGTGGGCAAGACAGAATGGTTGCCGTTGGGAT
GCGGAGACTTGCAGCTCTGCCTCGGCCGGAGGTCACCTGAAAATTCTTCA
GTGGGCGAGAGAACACAGCTGTATCTGGGACTCGCGGACGTGCACCGACG
CTGCGAAAGGAGGCCATCTGCATATCCTCCAGTGGGCGCGTGAGAACGGC
TGGCCCTGGAACACATGGACTTGCCGAGAAGCGGCTCGCCACGGACACCT
TGATGTGATTAAGTGGGCAAAGGAGGTCGGCGTTGACTGGTATGAGCACA
CCTGCCTCGGGGCTGCTGAAGGCGGCCATCTTGACATTCTAAGCTGGGCG
CGAGCGAACGGCTGCAGCTGGGACCAGCGAACCTTCGAAGCAGCTGCCAA
AGCTGGAAACCTTCAAGTTCTTCGGTGGCTGCGCCTAAACGGCTGTCCGT
GGGACATGCACGCTTGCACGGGTGCCGCAGCCGCTGGACACTTGCATGTG
CTGCAATGGTTGAGGTTGAACGGATGCCCTTGGGATGAACAGACTTGCGC
TTGGGCAGCTGCGAGGGGACAGCTTGACATGCTGAGGTGGGCACGCATGG
AGGGTGCTCCATGGGATGAACTCACTTGTTTGGCGGCTGCTTTTCGAGGA
GAATTGAACACCCTGAAGTGGGCAAGAGAGCACGGGTGTCCTTGGACAGC
TGCGGTTTGCAACGCTGCTAGAGTTGGAGGACATTATGGCGTATTGGTGT
GGGCACGCGCCAACGACTGTCCAGAGCAGTAACAGGTGGAAAAAACCGTA
TGTTGAGTCAATATAGCCACAGTAGTCGCTGTGAATCTTGCACACAAATC
ACTACACTTATTGGAGTACTTCTTGGCAATTTTAGCTTAACCAACGTCTC
CTTATATTTTGTTATTTATAACTTATTTGCCACAACTGAGTAAATCCACG
AGCGCCTCTCTGCTGGAATATTCTGTCGGCTGACTATCCTCACATGAAGA
CAGTATCGAGGTTACTAGGAACTGTGTTAAGTCAACTTCACGACGTGTGG
ATGTGCTTTCTGCATATTTTTTGCATGAGGATGGGTAAGGGTGGATACGA
AATTAGGTGATGTTAAGCGTGTTTTTGCTTTGACACTCAGACTGGGATAC
GTGGAAATTCCACGTGTTGAATGCTGATGTCGAAGGTTATTGCGAACGTG
TATTAATAATACTCCGAAGTAGTCGCCATTTCTACTGGTGACACTTTCAA
CTCGTCACTGATTCGATTCATCAGCCAAAGTTCAGATGGATATTTGAATG
GTTGATGAACGTGGGTGTTAATCGTGGCGTGTGCCATATTAGATGGACTG
CGGGGCAGCCACTGTTTCTTCGCATGGAAATGTACTCTGTATCCACCGAC
CTACGCCCGAACGGGTAGGGTAGCCCGTGAACTGAGCATGACTGGAAGTC
TAGTCAGAGGTCTTTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1052:27699..29666+

>mRNA_H-paniculata_contig1052.340.1 ID=mRNA_H-paniculata_contig1052.340.1|Name=mRNA_H-paniculata_contig1052.340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2412bp|location=Sequence derived from alignment at H-paniculata_contig1052:27699..29666+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCAGCCTTTCGCCTTTCGTCGTGCAAAATCCATTGCAAAGCAACGC
AGATATCCTGAGGAGGGTGGCCGAGTATGCTCACGACACGCAGTTCCTGT
TTTTTGCACTGGTGTCCAGAGGCTGGAGAATTGGATGGGGGTCAAATCGG
CCGAGAATCACCAGGGCCGTGACATCTGACTCCACGATTTCTCAGCTACG
GTACAGCTTCGACTCCGGGCTCACACGCAGCGCCGTGATATGCAAGGCCA
TCGCAGGCTTCGGTAATTTATCTCTCCTAATCTGGGCGAGGATGTTCGAC
TGTCCCTGGAGGTCTACAACGTGCAGCGCCGCAGCCTCAGGGGGGCATCT
AGAGGTGTTGAAGTGGTGCAGGGCGAACGGCTGTTCCTGGGACACAACGA
CATGCAGTCGGGCTGCCCGCAGGGGACACCTCAAAGTTCTTCAGTGGGCA
AGACAGAATGGTTGCCGTTGGGATGCGGAGACTTGCAGCTCTGCCTCGGC
CGGAGGTCACCTGAAAATTCTTCAGTGGGCGAGAGAACACAGCTGTATCT
GGGACTCGCGGACGTGCACCGACGCTGCGAAAGGAGGCCATCTGCATATC
CTCCAGTGGGCGCGTGAGAACGGCTGGCCCTGGAACACATGGACTTGCCG
AGAAGCGGCTCGCCACGGACACCTTGATGTGATTAAGTGGGCAAAGGAGG
TCGGCGTTGACTGGTATGAGCACACCTGCCTCGGGGCTGCTGAAGGCGGC
CATCTTGACATTCTAAGCTGGGCGCGAGCGAACGGCTGCAGCTGGGACCA
GCGAACCTTCGAAGCAGCTGCCAAAGCTGGAAACCTTCAAGTTCTTCGGT
GGCTGCGCCTAAACGGCTGTCCGTGGGACATGCACGCTTGCACGGGTGCC
GCAGCCGCTGGACACTTGCATGTGCTGCAATGGTTGAGGTTGAACGGATG
CCCTTGGGATGAACAGACTTGCGCTTGGGCAGCTGCGAGGGGACAGCTTG
ACATGCTGAGGTGGGCACGCATGGAGGGTGCTCCATGGGATGAACTCACT
TGTTTGGCGGCTGCTTTTCGAGGAGAATTGAACACCCTGAAGTGGGCAAG
AGAGCACGGGTGTCCTTGGACAGCTGCGGTTTGCAACGCTGCTAGAGTTG
GAGGACATTATGGCGTATTGGTGTGGGCACGCGCCAACGACTGTCCAGAG
CAGTAAATGGCCAGCCTTTCGCCTTTCGTCGTGCAAAATCCATTGCAAAG
CAACGCAGATATCCTGAGGAGGGTGGCCGAGTATGCTCACGACACGCAGT
TCCTGTTTTTTGCACTGGTGTCCAGAGGCTGGAGAATTGGATGGGGGTCA
AATCGGCCGAGAATCACCAGGGCCGTGACATCTGACTCCACGATTTCTCA
GCTACGGTACAGCTTCGACTCCGGGCTCACACGCAGCGCCGTGATATGCA
AGGCCATCGCAGGCTTCGGTAATTTATCTCTCCTAATCTGGGCGAGGATG
TTCGACTGTCCCTGGAGGTCTACAACGTGCAGCGCCGCAGCCTCAGGGGG
GCATCTAGAGGTGTTGAAGTGGTGCAGGGCGAACGGCTGTTCCTGGGACA
CAACGACATGCAGTCGGGCTGCCCGCAGGGGACACCTCAAAGTTCTTCAG
TGGGCAAGACAGAATGGTTGCCGTTGGGATGCGGAGACTTGCAGCTCTGC
CTCGGCCGGAGGTCACCTGAAAATTCTTCAGTGGGCGAGAGAACACAGCT
GTATCTGGGACTCGCGGACGTGCACCGACGCTGCGAAAGGAGGCCATCTG
CATATCCTCCAGTGGGCGCGTGAGAACGGCTGGCCCTGGAACACATGGAC
TTGCCGAGAAGCGGCTCGCCACGGACACCTTGATGTGATTAAGTGGGCAA
AGGAGGTCGGCGTTGACTGGTATGAGCACACCTGCCTCGGGGCTGCTGAA
GGCGGCCATCTTGACATTCTAAGCTGGGCGCGAGCGAACGGCTGCAGCTG
GGACCAGCGAACCTTCGAAGCAGCTGCCAAAGCTGGAAACCTTCAAGTTC
TTCGGTGGCTGCGCCTAAACGGCTGTCCGTGGGACATGCACGCTTGCACG
GGTGCCGCAGCCGCTGGACACTTGCATGTGCTGCAATGGTTGAGGTTGAA
CGGATGCCCTTGGGATGAACAGACTTGCGCTTGGGCAGCTGCGAGGGGAC
AGCTTGACATGCTGAGGTGGGCACGCATGGAGGGTGCTCCATGGGATGAA
CTCACTTGTTTGGCGGCTGCTTTTCGAGGAGAATTGAACACCCTGAAGTG
GGCAAGAGAGCACGGGTGTCCTTGGACAGCTGCGGTTTGCAACGCTGCTA
GAGTTGGAGGACATTATGGCGTATTGGTGTGGGCACGCGCCAACGACTGT
CCAGAGCAGTAA
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