prot_H-paniculata_contig10517.338.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig10517.338.1
Unique Nameprot_H-paniculata_contig10517.338.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length124
Homology
BLAST of mRNA_H-paniculata_contig10517.338.1 vs. uniprot
Match: D7G4R9_ECTSI (Spliceosomal protein sap, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4R9_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 4.140e-69
Identity = 112/123 (91.06%), Postives = 121/123 (98.37%), Query Frame = 0
Query:    1 QFHVGEVVTSLQKTTLVPGGAEVLLYSTINGSIGAILPFRSRDDVDFFTHMEMYMRQEKPTLCGRDHISYRSYYLPAKDVIDGDLCEQFPSLPYDKQKLVSAGLDRSVGEVVKKLEDTRNRLL 123
            QFHVGEVV+SL++TTLVPGGAEVLLYSTINGSIGA+LPF+SRDDVDFFTHMEMYMRQEKPTLCGRDHISYRSYYLPAKDVIDGDLCEQF SLP++KQKLV+ GLDR+VGEVVKKLEDTRNRLL
Sbjct: 1134 QFHVGEVVSSLRRTTLVPGGAEVLLYSTINGSIGALLPFKSRDDVDFFTHMEMYMRQEKPTLCGRDHISYRSYYLPAKDVIDGDLCEQFSSLPFEKQKLVANGLDRTVGEVVKKLEDTRNRLL 1256          
BLAST of mRNA_H-paniculata_contig10517.338.1 vs. uniprot
Match: D5A8K6_PICSI (CPSF_A domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=D5A8K6_PICSI)

HSP 1 Score: 185 bits (469), Expect = 1.160e-57
Identity = 81/123 (65.85%), Postives = 105/123 (85.37%), Query Frame = 0
Query:    1 QFHVGEVVTSLQKTTLVPGGAEVLLYSTINGSIGAILPFRSRDDVDFFTHMEMYMRQEKPTLCGRDHISYRSYYLPAKDVIDGDLCEQFPSLPYDKQKLVSAGLDRSVGEVVKKLEDTRNRLL 123
            QFH+G+VVTSLQK +L+PGG E L+Y T+ GSIGA+LPF SR+DVDFF+H+EM++RQE+P LCGRDH+ YRS Y P KDVIDGDLCEQFP+LP D Q+ ++  LDR+ GE++KKLED RN+++
Sbjct:   51 QFHIGDVVTSLQKASLIPGGGECLIYGTVMGSIGALLPFTSREDVDFFSHLEMHLRQEQPPLCGRDHMGYRSSYFPVKDVIDGDLCEQFPTLPPDLQRKIADELDRTPGEILKKLEDIRNKII 173          
BLAST of mRNA_H-paniculata_contig10517.338.1 vs. uniprot
Match: A0A6J1BBV3_9ROSI (spliceosome-associated protein 130 A-like n=1 Tax=Herrania umbratica TaxID=108875 RepID=A0A6J1BBV3_9ROSI)

HSP 1 Score: 184 bits (467), Expect = 2.340e-57
Identity = 81/123 (65.85%), Postives = 104/123 (84.55%), Query Frame = 0
Query:    1 QFHVGEVVTSLQKTTLVPGGAEVLLYSTINGSIGAILPFRSRDDVDFFTHMEMYMRQEKPTLCGRDHISYRSYYLPAKDVIDGDLCEQFPSLPYDKQKLVSAGLDRSVGEVVKKLEDTRNRLL 123
            QFH+G+VVTSLQK +L+PGG E +LY T  GS+GA+LPF SRDDVDFF+H+EM+MRQE P LCGRDH++YRS Y P KDVIDGDLCEQFP+LP D Q+ ++  LDR+ GE++KKLE+ RN+++
Sbjct:   51 QFHIGDVVTSLQKASLIPGGGECVLYGTAMGSLGALLPFTSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPGEILKKLEEVRNKII 173          
BLAST of mRNA_H-paniculata_contig10517.338.1 vs. uniprot
Match: A0A2P4XG75_9STRA (Pre-mRNA-splicing factor RSE1 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XG75_9STRA)

HSP 1 Score: 184 bits (466), Expect = 5.390e-56
Identity = 84/123 (68.29%), Postives = 104/123 (84.55%), Query Frame = 0
Query:    1 QFHVGEVVTSLQKTTLVPGGAEVLLYSTINGSIGAILPFRSRDDVDFFTHMEMYMRQEKPTLCGRDHISYRSYYLPAKDVIDGDLCEQFPSLPYDKQKLVSAGLDRSVGEVVKKLEDTRNRLL 123
            QFHVG+VVTS+ +T+LVPGG E ++Y+TI G IGA++PF SR+DVDF+TH+EMYMRQE+P LCGRDH+SYRSYY+P K+V DGDLCEQF SL  +KQ  V+  LDR+  EV+KKLED RNRLL
Sbjct:  142 QFHVGDVVTSMVRTSLVPGGIEAIIYATIMGRIGALIPFASREDVDFYTHLEMYMRQEQPPLCGRDHLSYRSYYIPVKNVTDGDLCEQFSSLSVEKQASVAEDLDRTPAEVLKKLEDIRNRLL 264          
BLAST of mRNA_H-paniculata_contig10517.338.1 vs. uniprot
Match: A0A835YUV4_9STRA (Putative spliceosomal protein sap n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUV4_9STRA)

HSP 1 Score: 194 bits (493), Expect = 4.830e-55
Identity = 87/122 (71.31%), Postives = 108/122 (88.52%), Query Frame = 0
Query:    2 FHVGEVVTSLQKTTLVPGGAEVLLYSTINGSIGAILPFRSRDDVDFFTHMEMYMRQEKPTLCGRDHISYRSYYLPAKDVIDGDLCEQFPSLPYDKQKLVSAGLDRSVGEVVKKLEDTRNRLL 123
            FH+G+++TSL KTTLVPGGAEV+LYS+I G++GA LPF +++DVDFF H+EM+MRQEKPTLCGR+H SYRSY+LP K+V+DGDLCEQF +LP D QK ++ GLDR+VGEV KKLED RNRLL
Sbjct: 1132 FHLGDILTSLHKTTLVPGGAEVVLYSSITGALGAFLPFSTKEDVDFFVHLEMHMRQEKPTLCGREHTSYRSYFLPVKNVVDGDLCEQFGTLPLDIQKKIATGLDRTVGEVAKKLEDVRNRLL 1253          
BLAST of mRNA_H-paniculata_contig10517.338.1 vs. uniprot
Match: A0A662XMA8_9STRA (CPSF_A domain-containing protein (Fragment) n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A662XMA8_9STRA)

HSP 1 Score: 184 bits (468), Expect = 4.920e-55
Identity = 84/123 (68.29%), Postives = 105/123 (85.37%), Query Frame = 0
Query:    1 QFHVGEVVTSLQKTTLVPGGAEVLLYSTINGSIGAILPFRSRDDVDFFTHMEMYMRQEKPTLCGRDHISYRSYYLPAKDVIDGDLCEQFPSLPYDKQKLVSAGLDRSVGEVVKKLEDTRNRLL 123
            QFHVG+VVTS+ +T+LVPGG E +LY+TI+G IGA++PF SR+DVDF+TH+EMYMRQE+P LCGRDH+SYRSY++P K+V DGDLCEQF SL  DKQ  V+  LDR+  EV+KKLED RNRL+
Sbjct:  249 QFHVGDVVTSMARTSLVPGGIEAILYATISGRIGALIPFTSREDVDFYTHLEMYMRQERPPLCGRDHLSYRSYFIPVKNVTDGDLCEQFVSLSPDKQASVAEDLDRTPAEVLKKLEDIRNRLM 371          
BLAST of mRNA_H-paniculata_contig10517.338.1 vs. uniprot
Match: A0A0K9R345_SPIOL (CPSF_A domain-containing protein n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9R345_SPIOL)

HSP 1 Score: 180 bits (457), Expect = 4.970e-55
Identity = 78/123 (63.41%), Postives = 103/123 (83.74%), Query Frame = 0
Query:    1 QFHVGEVVTSLQKTTLVPGGAEVLLYSTINGSIGAILPFRSRDDVDFFTHMEMYMRQEKPTLCGRDHISYRSYYLPAKDVIDGDLCEQFPSLPYDKQKLVSAGLDRSVGEVVKKLEDTRNRLL 123
            QFHVG+VV+SLQK +L+PGG E ++Y T+ GS+GA LPF SRDDVDFF+H+EM++RQE P LCGRDH++YRS Y P KDVIDGDLCEQFP+LP D Q+ ++  LDR+  E++KKLE+ RN+++
Sbjct:  111 QFHVGDVVSSLQKASLIPGGGECIIYGTVMGSLGAFLPFTSRDDVDFFSHLEMHLRQENPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDMQRKIADELDRTPAEILKKLEEIRNKII 233          
BLAST of mRNA_H-paniculata_contig10517.338.1 vs. uniprot
Match: A0A662XU68_9STRA (CPSF_A domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XU68_9STRA)

HSP 1 Score: 181 bits (459), Expect = 1.860e-54
Identity = 82/123 (66.67%), Postives = 104/123 (84.55%), Query Frame = 0
Query:    1 QFHVGEVVTSLQKTTLVPGGAEVLLYSTINGSIGAILPFRSRDDVDFFTHMEMYMRQEKPTLCGRDHISYRSYYLPAKDVIDGDLCEQFPSLPYDKQKLVSAGLDRSVGEVVKKLEDTRNRLL 123
            QFHVG+VVTS+ + +LVPGG E +LY+TI+G IGA++PF SR+DVDF+TH+EMYMRQE+P LCGRDH+SYRSY++P K+V DGDLCEQF SL  +KQ  V+  LDR+  EV+KKLED RNRL+
Sbjct:  181 QFHVGDVVTSMARASLVPGGIEAILYATISGRIGALIPFTSREDVDFYTHLEMYMRQERPPLCGRDHLSYRSYFIPVKNVTDGDLCEQFVSLSPEKQASVAEDLDRTPAEVLKKLEDIRNRLM 303          
BLAST of mRNA_H-paniculata_contig10517.338.1 vs. uniprot
Match: UPI001493B70E (spliceosome-associated protein 130 A-like n=1 Tax=Setaria viridis TaxID=4556 RepID=UPI001493B70E)

HSP 1 Score: 176 bits (447), Expect = 2.580e-54
Identity = 78/123 (63.41%), Postives = 102/123 (82.93%), Query Frame = 0
Query:    1 QFHVGEVVTSLQKTTLVPGGAEVLLYSTINGSIGAILPFRSRDDVDFFTHMEMYMRQEKPTLCGRDHISYRSYYLPAKDVIDGDLCEQFPSLPYDKQKLVSAGLDRSVGEVVKKLEDTRNRLL 123
            QFHVG+VVTSLQK +L+PGG E L+Y T+ GS+GA+L F SR+DVDFF+H+EM++RQE P LCGRDH++YRS Y P  DVIDGDLCEQ+PSL  D Q+ ++  LDR+ GE++KKLED RN+++
Sbjct:   51 QFHVGDVVTSLQKASLIPGGGECLIYGTVMGSVGALLAFTSREDVDFFSHLEMHLRQEHPPLCGRDHLAYRSAYFPPLDVIDGDLCEQYPSLSADMQRKIADVLDRTPGEILKKLEDVRNKII 173          
BLAST of mRNA_H-paniculata_contig10517.338.1 vs. uniprot
Match: UPI001F5EA347 (spliceosome-associated protein 130 A-like n=1 Tax=Vigna umbellata TaxID=87088 RepID=UPI001F5EA347)

HSP 1 Score: 175 bits (443), Expect = 1.040e-53
Identity = 76/123 (61.79%), Postives = 102/123 (82.93%), Query Frame = 0
Query:    1 QFHVGEVVTSLQKTTLVPGGAEVLLYSTINGSIGAILPFRSRDDVDFFTHMEMYMRQEKPTLCGRDHISYRSYYLPAKDVIDGDLCEQFPSLPYDKQKLVSAGLDRSVGEVVKKLEDTRNRLL 123
            QFHVG+VV+ LQK +L+PGG E +++ T+ GS+GA+  F SRDDVDFF+H+EM+MRQ+ P LCGRDH+SYRS Y P KDVIDGDLCEQFP+LP D Q+ ++  LDR+ GE++KKLE+ RN+++
Sbjct:   51 QFHVGDVVSCLQKASLIPGGGECIVFGTVMGSVGALHAFTSRDDVDFFSHLEMHMRQDHPPLCGRDHMSYRSSYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPGEILKKLEEVRNKII 173          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10517.338.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4R9_ECTSI4.140e-6991.06Spliceosomal protein sap, putative n=2 Tax=Ectocar... [more]
D5A8K6_PICSI1.160e-5765.85CPSF_A domain-containing protein n=1 Tax=Picea sit... [more]
A0A6J1BBV3_9ROSI2.340e-5765.85spliceosome-associated protein 130 A-like n=1 Tax=... [more]
A0A2P4XG75_9STRA5.390e-5668.29Pre-mRNA-splicing factor RSE1 n=1 Tax=Phytophthora... [more]
A0A835YUV4_9STRA4.830e-5571.31Putative spliceosomal protein sap n=1 Tax=Tribonem... [more]
A0A662XMA8_9STRA4.920e-5568.29CPSF_A domain-containing protein (Fragment) n=2 Ta... [more]
A0A0K9R345_SPIOL4.970e-5563.41CPSF_A domain-containing protein n=1 Tax=Spinacia ... [more]
A0A662XU68_9STRA1.860e-5466.67CPSF_A domain-containing protein n=1 Tax=Nothophyt... [more]
UPI001493B70E2.580e-5463.41spliceosome-associated protein 130 A-like n=1 Tax=... [more]
UPI001F5EA3471.040e-5361.79spliceosome-associated protein 130 A-like n=1 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..37
e-value: 2.5E-7
score: 32.1
IPR004871Cleavage/polyadenylation specificity factor, A subunit, C-terminalPFAMPF03178CPSF_Acoord: 1..89
e-value: 5.2E-30
score: 104.9
NoneNo IPR availablePANTHERPTHR10644:SF1SPLICING FACTOR 3B SUBUNIT 3coord: 1..115
NoneNo IPR availablePANTHERPTHR10644DNA REPAIR/RNA PROCESSING CPSF FAMILYcoord: 1..115

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10517contigH-paniculata_contig10517:2000..2965 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10517.338.1mRNA_H-paniculata_contig10517.338.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig10517 2000..2965 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig10517.338.1 ID=prot_H-paniculata_contig10517.338.1|Name=mRNA_H-paniculata_contig10517.338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp
QFHVGEVVTSLQKTTLVPGGAEVLLYSTINGSIGAILPFRSRDDVDFFTH
MEMYMRQEKPTLCGRDHISYRSYYLPAKDVIDGDLCEQFPSLPYDKQKLV
SAGLDRSVGEVVKKLEDTRNRLL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR004871Cleavage/polyA-sp_fac_asu_C