mRNA_H-paniculata_contig1582.3381.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1582.3381.1
Unique NamemRNA_H-paniculata_contig1582.3381.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1582.3381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1582contigH-paniculata_contig1582:18785..19323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size539
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1582.3381.1prot_H-paniculata_contig1582.3381.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1582 18831..19169 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929262.7371137-UTR-H-paniculata_contig1582:18784..188301622929262.7371137-UTR-H-paniculata_contig1582:18784..18830Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1582 18785..18830 +
1691480792.3263392-UTR-H-paniculata_contig1582:18784..188301691480792.3263392-UTR-H-paniculata_contig1582:18784..18830Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1582 18785..18830 +
1622929262.7665105-UTR-H-paniculata_contig1582:19169..193231622929262.7665105-UTR-H-paniculata_contig1582:19169..19323Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1582 19170..19323 +
1691480792.351158-UTR-H-paniculata_contig1582:19169..193231691480792.351158-UTR-H-paniculata_contig1582:19169..19323Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1582 19170..19323 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929262.7502055-CDS-H-paniculata_contig1582:18830..191691622929262.7502055-CDS-H-paniculata_contig1582:18830..19169Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1582 18831..19169 +
1691480792.3385558-CDS-H-paniculata_contig1582:18830..191691691480792.3385558-CDS-H-paniculata_contig1582:18830..19169Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1582 18831..19169 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1582.3381.1

>prot_H-paniculata_contig1582.3381.1 ID=prot_H-paniculata_contig1582.3381.1|Name=mRNA_H-paniculata_contig1582.3381.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
MSPDNGFNQRFNAKMMSYFARSLYHGSEWVTNSKTRIKVDEHGSMVTSFL
LGRDTLHLCDISRVQRRASYPVSSRAAGAVARLTVMYIPRPPGPSEGASV
PATYELIPPLHH*
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mRNA from alignment at H-paniculata_contig1582:18785..19323+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1582.3381.1 ID=mRNA_H-paniculata_contig1582.3381.1|Name=mRNA_H-paniculata_contig1582.3381.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=539bp|location=Sequence derived from alignment at H-paniculata_contig1582:18785..19323+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCCCAGCACTCGCATGATCTTGTGACCATAACATACACAAGTTGAATGT
CCCCAGACAACGGTTTTAATCAGCGATTCAATGCGAAAATGATGAGTTAC
TTCGCTCGATCGCTTTACCATGGGTCTGAGTGGGTGACCAATTCAAAAAC
AAGAATAAAAGTGGATGAACATGGATCAATGGTTACTTCATTTCTGCTAG
GGAGGGATACACTTCACCTGTGTGACATATCTCGCGTACAAAGACGAGCG
TCATACCCAGTATCGTCTCGTGCAGCCGGTGCGGTAGCACGGTTAACCGT
CATGTACATTCCACGACCGCCCGGTCCGTCAGAAGGCGCGTCCGTTCCAG
CAACATACGAATTAATACCTCCACTACATCATTAAAAACGGACGAGAATC
ACCAACACACAACACATGACCCATTGATCCATCGCCGGAGCATCACCGAC
CGACACCCTCGTGAACAAAAAAATAAGGCTCCAATTTATTTTTCGGGGAA
GGAATAGCGCACCTCATGTGCTGCGCGTTTTTGTCCTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig1582:18785..19323+

>mRNA_H-paniculata_contig1582.3381.1 ID=mRNA_H-paniculata_contig1582.3381.1|Name=mRNA_H-paniculata_contig1582.3381.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig1582:18785..19323+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCCCAGACAACGGTTTTAATCAGCGATTCAATGCGAAAATGATGAG
TTACTTCGCTCGATCGCTTTACCATGGGTCTGAGTGGGTGACCAATTCAA
AAACAAGAATAAAAGTGGATGAACATGGATCAATGGTTACTTCATTTCTG
CTAGGGAGGGATACACTTCACCTGTGTGACATATCTCGCGTACAAAGACG
AGCGTCATACCCAGTATCGTCTCGTGCAGCCGGTGCGGTAGCACGGTTAA
CCGTCATGTACATTCCACGACCGCCCGGTCCGTCAGAAGGCGCGTCCGTT
CCAGCAACATACGAATTAATACCTCCACTACATCATTAAATGTCCCCAGA
CAACGGTTTTAATCAGCGATTCAATGCGAAAATGATGAGTTACTTCGCTC
GATCGCTTTACCATGGGTCTGAGTGGGTGACCAATTCAAAAACAAGAATA
AAAGTGGATGAACATGGATCAATGGTTACTTCATTTCTGCTAGGGAGGGA
TACACTTCACCTGTGTGACATATCTCGCGTACAAAGACGAGCGTCATACC
CAGTATCGTCTCGTGCAGCCGGTGCGGTAGCACGGTTAACCGTCATGTAC
ATTCCACGACCGCCCGGTCCGTCAGAAGGCGCGTCCGTTCCAGCAACATA
CGAATTAATACCTCCACTACATCATTAA
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