mRNA_H-paniculata_contig158.3368.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig158.3368.1 vs. uniprot
Match: D7FUY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUY9_ECTSI) HSP 1 Score: 206 bits (523), Expect = 1.230e-49 Identity = 226/636 (35.53%), Postives = 311/636 (48.90%), Query Frame = 1
Query: 4081 ELANSVQASTLREGEVAVLRARLQSTEDEIDSVRREALLEGRARSVAEMAEAGKRDAAFRAEVEALKVRCEDQRRALATLASSREEEADACQVARTALAKEKMAMAKVQSRVRELELEVGRMSCFLESNGTATSIVGNVLNVAAVDRMRDDRQQPLG-------------PLPTQA------------ESPANSKFRRRHDQQQYNNGNYV------RGNCMSEAAPAAAWTSWDDIRPS---PIA------GPRESKERERTRNVFSALEESARTSREEADVLTRRIAQLRGLVRKAEWRADEMEAAXXXXXXXXXXXXXXXXXXXXXXXIATAGRHEAEQKARDAERRCEERTVALESDIQRVQGAAKVVQVEVVEARKELSRIRRELGDSDKRAAALHEELARLAADLRAAEAGKIALQMDLLRRLGERGGRXXXXXXX------------GGSSVSFPVGMNARQGHVAFSTSAVTRFSPLSSVLSGVRPSPVLPNHRVEVE-LGGINVEHCGRGG-EKAILRQRLAASQTHFTELIKASEEAVANCNKRCDARTRAALAAGTLVSACCRRRGIEAGRDEAVIAAARLDLVRRCFGALRTEALRSSRDRIGRRHETIRRWVKEAVQVAGEEL 5826
E+A V+A+ REGE+AVLR RL++ E+++ S RREALLEG ARS+AE AG++ A A ALK +C Q + +A LA SR EEADAC+ AR L KE+ + + + VREL+ EV R++ L G A + N++ + + D R+ G TQ E+P + + RH + RG+C ++ A D + + P+A G RE+KERER R ALEES R REE RR +LR +R+A+ R XXXXXXXXXXXXXXX A+E+++ R AA + + A++E S +R + + D+R L ++L A L AA+A ++ + +R LG R GG +S P + +A T L++V +G N E E L G ++ + E LR RLAASQ EL++ASE AVA CN+RCDA R LAAG L +AC RRG+ AGR+ V AA RL+L RRCF ALR EALR+SRDR RR E ++RW+ EA + AGEE+
Sbjct: 521 EVAELVEAAATREGEIAVLRTRLRAAEEDVGSARREALLEGSARSLAETEAAGRKAAQAWAGAVALKNKCRQQEQTIAGLALSRGEEADACRAARDELEKERSSRVESEGHVRELQGEVSRLASLL---GAANDEIERQRNISRDNEIGDHRRGQSGRGGGEAGGEALDRSASTQGVDDTDVCRYDGDETPTRRENQTRHHHTMSGRIEHGITPESWRGSCDNDKH-VAQRRQCDRVASTCSTPVASFTDRVGTREAKERERARKTLLALEESLRAGREEVRHHKRRAERLRAALREAQERGXXXXXXXXXXXXXXXXXXXXXGLAREETDAXXXXXXXXXXXXXXXXXXXXXEVEAIEAEVLRATAAALGAREQCSVAQREASGLRETVRELDRRVILLEQQLGASIASLHAADARRVCALVGRIRDLGGREWEGEARLEDLRARYEANNGAVGGRMLSDPAVSGPGKAAQDLQEAARTGMR-LNAVGNG-------DNRSGESERLQGKSLRNNSASAFEVTTLRDRLAASQAQHVELVRASEAAVAGCNQRCDAHIRVVLAAGKLTAACLLRRGVVAGREATVEAAGRLELARRCFRALREEALRASRDRSVRRQERLQRWIGEAFEGAGEEV 1144 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig158.3368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig158.3368.1 >prot_H-paniculata_contig158.3368.1 ID=prot_H-paniculata_contig158.3368.1|Name=mRNA_H-paniculata_contig158.3368.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1900bp MSTSTSMTICRGRLSTWEPSRFPEVITIQQRVLNVALVRLSESLVAPCTIback to top mRNA from alignment at H-paniculata_contig158:19265..31293+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig158.3368.1 ID=mRNA_H-paniculata_contig158.3368.1|Name=mRNA_H-paniculata_contig158.3368.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12029bp|location=Sequence derived from alignment at H-paniculata_contig158:19265..31293+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig158:19265..31293+ >mRNA_H-paniculata_contig158.3368.1 ID=mRNA_H-paniculata_contig158.3368.1|Name=mRNA_H-paniculata_contig158.3368.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=11400bp|location=Sequence derived from alignment at H-paniculata_contig158:19265..31293+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |