mRNA_H-paniculata_contig10515.334.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig10515.334.1
Unique Name	mRNA_H-paniculata_contig10515.334.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig10515.334.1 vs. uniprot
Match: A0A6H5JPW7_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPW7_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 5.050e-27
Identity = 60/126 (47.62%), Postives = 79/126 (62.70%), Query Frame = 1

Query:    1 RCPYCG----AEDVNTHHAQICHRAEAQVHQYQPLLRAVTRLLKRLGIRSTMQGGDPFTADRDYRMDIVVPAGELRDAPINVYRAKGLLIDITHADPQPTGHLQRGSATIDGSAAATSEARKSAHY 366
            RCP C      E + T HA+ C R  AQV+ ++PL  A++R L  L ++  ++ G PFT +R+  MDIV+  G L +A    YR KG+L+D+THADPQ   HL+ GSAT DG AA  SEARK  HY
Sbjct:   78 RCPRCHRGREGEIITTVHARTCRRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHY 203

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BLAST of mRNA_H-paniculata_contig10515.334.1 vs. uniprot
Match: A0A6H5K198_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K198_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.460e-26
Identity = 60/126 (47.62%), Postives = 79/126 (62.70%), Query Frame = 1

Query:    1 RCPYCG----AEDVNTHHAQICHRAEAQVHQYQPLLRAVTRLLKRLGIRSTMQGGDPFTADRDYRMDIVVPAGELRDAPINVYRAKGLLIDITHADPQPTGHLQRGSATIDGSAAATSEARKSAHY 366
            RCP C      E + T HA+ C R  AQV+ ++PL  A++R L  L ++  ++ G PFT +R+  MDIV+  G L +A    YR KG+L+D+THADPQ   HL+ GSAT DG AA  SEARK  HY
Sbjct:  101 RCPRCHRGREGEIITTVHARTCPRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHY 226

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BLAST of mRNA_H-paniculata_contig10515.334.1 vs. uniprot
Match: A0A6H5KDZ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDZ4_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.620e-26
Identity = 60/126 (47.62%), Postives = 79/126 (62.70%), Query Frame = 1

Query:    1 RCPYCG----AEDVNTHHAQICHRAEAQVHQYQPLLRAVTRLLKRLGIRSTMQGGDPFTADRDYRMDIVVPAGELRDAPINVYRAKGLLIDITHADPQPTGHLQRGSATIDGSAAATSEARKSAHY 366
            RCP C      E + T HA+ C R  AQV+ ++PL  A++R L  L ++  ++ G PFT +R+  MDIV+  G L +A    YR KG+L+D+THADPQ   HL+ GSAT DG AA  SEARK  HY
Sbjct:  155 RCPRCHRGREGEIITTVHARTCRRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHY 280

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BLAST of mRNA_H-paniculata_contig10515.334.1 vs. uniprot
Match: A0A6H5KEX1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEX1_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.980e-26
Identity = 60/126 (47.62%), Postives = 79/126 (62.70%), Query Frame = 1

Query:    1 RCPYCG----AEDVNTHHAQICHRAEAQVHQYQPLLRAVTRLLKRLGIRSTMQGGDPFTADRDYRMDIVVPAGELRDAPINVYRAKGLLIDITHADPQPTGHLQRGSATIDGSAAATSEARKSAHY 366
            RCP C      E + T HA+ C R  AQV+ ++PL  A++R L  L ++  ++ G PFT +R+  MDIV+  G L +A    YR KG+L+D+THADPQ   HL+ GSAT DG AA  SEARK  HY
Sbjct:   78 RCPRCHRGREGEIITTVHARTCRRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHY 203

[Close]

BLAST of mRNA_H-paniculata_contig10515.334.1 vs. uniprot
Match: A0A6H5LLI3_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLI3_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 3.860e-26
Identity = 60/126 (47.62%), Postives = 79/126 (62.70%), Query Frame = 1

Query:    1 RCPYCG----AEDVNTHHAQICHRAEAQVHQYQPLLRAVTRLLKRLGIRSTMQGGDPFTADRDYRMDIVVPAGELRDAPINVYRAKGLLIDITHADPQPTGHLQRGSATIDGSAAATSEARKSAHY 366
            RCP C      E + T HA+ C R  AQV+ ++PL  A++R L  L ++  ++ G PFT +R+  MDIV+  G L +A    YR KG+L+D+THADPQ   HL+ GSAT DG AA  SEARK  HY
Sbjct:  244 RCPRCHRGREGEIITTVHARTCRRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHY 369

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BLAST of mRNA_H-paniculata_contig10515.334.1 vs. uniprot
Match: A0A6H5JQ53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ53_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 4.110e-26
Identity = 60/126 (47.62%), Postives = 79/126 (62.70%), Query Frame = 1

Query:    1 RCPYCG----AEDVNTHHAQICHRAEAQVHQYQPLLRAVTRLLKRLGIRSTMQGGDPFTADRDYRMDIVVPAGELRDAPINVYRAKGLLIDITHADPQPTGHLQRGSATIDGSAAATSEARKSAHY 366
            RCP C      E + T HA+ C R  AQV+ ++PL  A++R L  L ++  ++ G PFT +R+  MDIV+  G L +A    YR KG+L+D+THADPQ   HL+ GSAT DG AA  SEARK  HY
Sbjct:  253 RCPRCHRGREGEIITTVHARTCQRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHY 378

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BLAST of mRNA_H-paniculata_contig10515.334.1 vs. uniprot
Match: A0A6H5JTC7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC7_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.410e-25
Identity = 59/126 (46.83%), Postives = 80/126 (63.49%), Query Frame = 1

Query:    1 RCPYCG----AEDVNTHHAQICHRAEAQVHQYQPLLRAVTRLLKRLGIRSTMQGGDPFTADRDYRMDIVVPAGELRDAPINVYRAKGLLIDITHADPQPTGHLQRGSATIDGSAAATSEARKSAHY 366
            RCP C      E + T HA+ C R  AQV+ ++PL  A++R L  L ++  ++ G PFT +R+  MD+V+  G L +A    YR KG+L+D+THADPQ   HL+ GSAT DG+AA  SEARK  HY
Sbjct:  631 RCPRCHRGREGEIITTVHARTCPRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDLVIRPGALTNASSPGYRNKGVLLDVTHADPQAQVHLRNGSATSDGTAAQASEARKRQHY 756

[Close]

BLAST of mRNA_H-paniculata_contig10515.334.1 vs. uniprot
Match: A0A6H5K195_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K195_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 2.700e-25
Identity = 59/126 (46.83%), Postives = 79/126 (62.70%), Query Frame = 1

Query:    1 RCPYCG----AEDVNTHHAQICHRAEAQVHQYQPLLRAVTRLLKRLGIRSTMQGGDPFTADRDYRMDIVVPAGELRDAPINVYRAKGLLIDITHADPQPTGHLQRGSATIDGSAAATSEARKSAHY 366
            +CP C      E + T HA+ C R  AQV+ ++PL  A++R L  L ++  ++ G PFT +R+  MDIV+  G L +A    YR KG+L+D+THADPQ   HL+ GSAT DG AA  SEARK  HY
Sbjct:  957 KCPRCHRGREGEIITTVHARTCPRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRKKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHY 1082

[Close]

BLAST of mRNA_H-paniculata_contig10515.334.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.280e-24
Identity = 58/126 (46.03%), Postives = 78/126 (61.90%), Query Frame = 1

Query:    1 RCPYCG----AEDVNTHHAQICHRAEAQVHQYQPLLRAVTRLLKRLGIRSTMQGGDPFTADRDYRMDIVVPAGELRDAPINVYRAKGLLIDITHADPQPTGHLQRGSATIDGSAAATSEARKSAHY 366
            RCP C      E + T HA+ C R  AQV+ ++PL  A++R L  L ++  ++ G PFT +R+  MDIV+  G L +A    YR KG+L+D+THADPQ   HL+ GSAT DG+    SEARK  HY
Sbjct: 1000 RCPRCHRGREGEIITTVHARTCPRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGTEIQASEARKRQHY 1125

[Close]

BLAST of mRNA_H-paniculata_contig10515.334.1 vs. uniprot
Match: A0A6H5JUN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN7_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 6.240e-24
Identity = 58/126 (46.03%), Postives = 77/126 (61.11%), Query Frame = 1

Query:    1 RCPYCG----AEDVNTHHAQICHRAEAQVHQYQPLLRAVTRLLKRLGIRSTMQGGDPFTADRDYRMDIVVPAGELRDAPINVYRAKGLLIDITHADPQPTGHLQRGSATIDGSAAATSEARKSAHY 366
            RCP C      E + T HA+   R  AQV+ ++PL  A++R    L ++  ++ G PFT +R+  MDIV+  G L +A    YR KG+L+D+THADPQ   HL+ GSAT DG AA  SEARK  HY
Sbjct:   87 RCPRCHRGREGEIITTVHARTFPRDGAQVNMHKPLKYALSRACNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHY 212

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig10515.334.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig10515.334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21


Match Name	E-value	Identity	Description
A0A6H5JPW7_9PHAE	5.050e-27	47.62	Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K198_9PHAE	1.460e-26	47.62	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KDZ4_9PHAE	1.620e-26	47.62	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KEX1_9PHAE	1.980e-26	47.62	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5LLI3_9PHAE	3.860e-26	47.62	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JQ53_9PHAE	4.110e-26	47.62	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JTC7_9PHAE	1.410e-25	46.83	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5K195_9PHAE	2.700e-25	46.83	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KMQ2_9PHAE	1.280e-24	46.03	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5JUN7_9PHAE	6.240e-24	46.03	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig10515	contig	H-paniculata_contig10515:1124..1489 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	366
Cds size	366
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928753.8332-CDS-H-paniculata_contig10515:1123..1489	1622928753.8332-CDS-H-paniculata_contig10515:1123..1489	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig10515 1124..1489 +
1691480606.8228657-CDS-H-paniculata_contig10515:1123..1489	1691480606.8228657-CDS-H-paniculata_contig10515:1123..1489	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig10515 1124..1489 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig10515.334.1	prot_H-paniculata_contig10515.334.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig10515 1124..1489 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig10515:1124..1489+
coding sequence from alignment at H-paniculata_contig10515:1124..1489+

protein sequence of mRNA_H-paniculata_contig10515.334.1

>prot_H-paniculata_contig10515.334.1 ID=prot_H-paniculata_contig10515.334.1|Name=mRNA_H-paniculata_contig10515.334.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
RCPYCGAEDVNTHHAQICHRAEAQVHQYQPLLRAVTRLLKRLGIRSTMQG
GDPFTADRDYRMDIVVPAGELRDAPINVYRAKGLLIDITHADPQPTGHLQ
RGSATIDGSAAATSEARKSAHY

mRNA from alignment at H-paniculata_contig10515:1124..1489+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig10515.334.1 ID=mRNA_H-paniculata_contig10515.334.1|Name=mRNA_H-paniculata_contig10515.334.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=366bp|location=Sequence derived from alignment at H-paniculata_contig10515:1124..1489+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGATGCCCATACTGCGGAGCGGAGGATGTCAACACGCACCACGCCCAAAT
TTGCCATCGAGCGGAGGCGCAGGTACACCAATACCAACCGCTCCTACGCG
CGGTCACGCGACTCCTGAAGCGACTGGGCATCAGGAGCACGATGCAGGGC
GGAGACCCTTTTACGGCGGACCGGGACTACCGGATGGACATCGTCGTCCC
TGCAGGAGAGCTCCGAGATGCTCCTATTAACGTGTACCGCGCCAAGGGTC
TCCTGATTGACATCACGCACGCAGATCCTCAGCCGACAGGGCACCTCCAG
CGCGGGAGCGCTACCATCGACGGCTCGGCCGCCGCCACTTCCGAGGCGCG
CAAAAGCGCGCACTAC

Coding sequence (CDS) from alignment at H-paniculata_contig10515:1124..1489+

>mRNA_H-paniculata_contig10515.334.1 ID=mRNA_H-paniculata_contig10515.334.1|Name=mRNA_H-paniculata_contig10515.334.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig10515:1124..1489+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGATGCCCATACTGCGGAGCGGAGGATGTCAACACGCACCACGCCCAAAT
TTGCCATCGAGCGGAGGCGCAGGTACACCAATACCAACCGCTCCTACGCG
CGGTCACGCGACTCCTGAAGCGACTGGGCATCAGGAGCACGATGCAGGGC
GGAGACCCTTTTACGGCGGACCGGGACTACCGGATGGACATCGTCGTCCC
TGCAGGAGAGCTCCGAGATGCTCCTATTAACGTGTACCGCGCCAAGGGTC
TCCTGATTGACATCACGCACGCAGATCCTCAGCCGACAGGGCACCTCCAG
CGCGGGAGCGCTACCATCGACGGCTCGGCCGCCGCCACTTCCGAGGCGCG
CAAAAGCGCGCACTACCGATGCCCATACTGCGGAGCGGAGGATGTCAACA
CGCACCACGCCCAAATTTGCCATCGAGCGGAGGCGCAGGTACACCAATAC
CAACCGCTCCTACGCGCGGTCACGCGACTCCTGAAGCGACTGGGCATCAG
GAGCACGATGCAGGGCGGAGACCCTTTTACGGCGGACCGGGACTACCGGA
TGGACATCGTCGTCCCTGCAGGAGAGCTCCGAGATGCTCCTATTAACGTG
TACCGCGCCAAGGGTCTCCTGATTGACATCACGCACGCAGATCCTCAGCC
GACAGGGCACCTCCAGCGCGGGAGCGCTACCATCGACGGCTCGGCCGCCG
CCACTTCCGAGGCGCGCAAAAGCGCGCACTAC