mRNA_H-paniculata_contig15762.3340.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15762.3340.1
Unique NamemRNA_H-paniculata_contig15762.3340.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15762.3340.1 vs. uniprot
Match: A0A6H5L2H8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H8_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 3.930e-67
Identity = 108/198 (54.55%), Postives = 137/198 (69.19%), Query Frame = 1 
Query:    1 PVPRGKEGNRWCQTPVKASLSSSLTCVHHQHNR-IGNGRPTVDQKRFMLLAGKSSKEEFYDRK-GDLCWLRVVSHLRSLASPLEDEQRKLIITAGERAFALADVKITLHGFRQCTLFWLAACRLTRRGYPLTMVAHPSKAKFRDFLNGLRNDKSIFPPPKPASSPLVCIRDLNA-------RGACYYSNGYADVCRMF 567
            PV RGKEGNRWCQTPV+ SL S + C+HH H R  G   P+ +Q R+M+LA     +EF+DR+ GD+CW RVVS+LR+  SP E  QR+ ++TAG+RA A+AD +I LHGF QC  FWLAACRLTRRGY   MVAH SK  F++FL+ LR  K+ +PPP PASSP VC+ D  +       +   YY++GY  VC MF
Sbjct:  193 PVSRGKEGNRWCQTPVRGSLESRMACMHHSHRRRAGGAGPSKEQLRYMMLA-----DEFFDRQSGDICWQRVVSYLRARKSPRELAQRRQVLTAGDRALAVADTQIVLHGFVQCLFFWLAACRLTRRGYEFKMVAHASKGDFKEFLSRLRR-KAAWPPPSPASSPFVCMDDKRSGKRQRQMQHPSYYASGYDQVCGMF 384
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BLAST of mRNA_H-paniculata_contig15762.3340.1 vs. uniprot
Match: D7G151_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G151_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 4.670e-66
Identity = 106/191 (55.50%), Postives = 134/191 (70.16%), Query Frame = 1 
Query:    1 PVPRGKEGNRWCQTPVKASLSSSLTCVHHQHNRIGNGR-PTVDQKRFMLLAGKSSKEEFYDRK-GDLCWLRVVSHLRSLASPLEDEQRKLIITAGERAFALADVKITLHGFRQCTLFWLAACRLTRRGYPLTMVAHPSKAKFRDFLNGLRNDKSIFPPPKPASSPLVCIRDLNA-------RGACYYSNGY 546
            PVPRGKEGNRWCQTPV+ SL S + C+HH H R   G  P+ +Q R+M+LA     ++FYDR+ GD+CW RVVS+LR+   P E  QR+ ++TAG RA A+AD KI LHGF QC  FWLAACRLTRRGY  TMVAH SK+ F++FL+ LR  K+ +PPP PASSP VC+ D  +       +   YY++GY
Sbjct:  114 PVPRGKEGNRWCQTPVRGSLESRMACMHHSHRRRAGGTGPSKEQLRYMMLA-----DDFYDRQSGDICWQRVVSYLRARKCPRELAQRRQVLTAGGRAVAVADTKIVLHGFVQCLFFWLAACRLTRRGYEFTMVAHASKSDFKEFLSRLRR-KAAWPPPSPASSPFVCMDDKRSGKRQRQMQHPSYYASGY 298
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BLAST of mRNA_H-paniculata_contig15762.3340.1 vs. uniprot
Match: A0A836CBN2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBN2_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 9.760e-21
Identity = 59/155 (38.06%), Postives = 84/155 (54.19%), Query Frame = 1 
Query:  118 TVDQKRFMLLAGKSSKEEFYDRKGDLCWLRVVSHLRSLASPLEDEQRKLIITAGER----AFALADVKITLHGFRQCTLFWLAACRLTRRGYPLTMVAHPSKAKFRDFLNGLRNDKSIFPPPKPASSPLVCI--RDLNARGACYYSNGYADVCRM 564
            T DQ+  +LL        FY R G+LCW  V+++L+       + +  +++ +G      AFA  DVKI LHGF+QC LFW AACRL  RGY    V H S+A+FR  L   ++D + F   +  +SPL  I  R  N R   YY  G+ ++C +
Sbjct:  118 TRDQRLHLLL-----DPAFYRRNGELCWETVLAYLQEHTPDWRNRKEAVVVGSGGEGEAAAFATRDVKIVLHGFQQCPLFWFAACRLAARGYAFQHVCHASRAQFRAALRR-QSDVAGFS-MQHTTSPLALISSRRENVR---YYLGGFDNICNL 262
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15762.3340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L2H8_9PHAE3.930e-6754.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G151_ECTSI4.670e-6655.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CBN2_9STRA9.760e-2138.06Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15762contigH-paniculata_contig15762:144..4042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_005290.1
Exons3
Model size570
Cds size570
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15762.3340.1prot_H-paniculata_contig15762.3340.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15762 144..4042 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929256.7303445-CDS-H-paniculata_contig15762:143..3091622929256.7303445-CDS-H-paniculata_contig15762:143..309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15762 144..309 +
1691480790.2493598-CDS-H-paniculata_contig15762:143..3091691480790.2493598-CDS-H-paniculata_contig15762:143..309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15762 144..309 +
1622929256.7456002-CDS-H-paniculata_contig15762:2124..23351622929256.7456002-CDS-H-paniculata_contig15762:2124..2335Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15762 2125..2335 +
1691480790.2627413-CDS-H-paniculata_contig15762:2124..23351691480790.2627413-CDS-H-paniculata_contig15762:2124..2335Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15762 2125..2335 +
1622929256.7616594-CDS-H-paniculata_contig15762:3849..40421622929256.7616594-CDS-H-paniculata_contig15762:3849..4042Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15762 3850..4042 +
1691480790.271346-CDS-H-paniculata_contig15762:3849..40421691480790.271346-CDS-H-paniculata_contig15762:3849..4042Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15762 3850..4042 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15762.3340.1

>prot_H-paniculata_contig15762.3340.1 ID=prot_H-paniculata_contig15762.3340.1|Name=mRNA_H-paniculata_contig15762.3340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=190bp
PVPRGKEGNRWCQTPVKASLSSSLTCVHHQHNRIGNGRPTVDQKRFMLLA
GKSSKEEFYDRKGDLCWLRVVSHLRSLASPLEDEQRKLIITAGERAFALA
DVKITLHGFRQCTLFWLAACRLTRRGYPLTMVAHPSKAKFRDFLNGLRND
KSIFPPPKPASSPLVCIRDLNARGACYYSNGYADVCRMF*
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mRNA from alignment at H-paniculata_contig15762:144..4042+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15762.3340.1 ID=mRNA_H-paniculata_contig15762.3340.1|Name=mRNA_H-paniculata_contig15762.3340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3899bp|location=Sequence derived from alignment at H-paniculata_contig15762:144..4042+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGTCCCGCGCGGAAAGGAAGGCAACCGGTGGTGTCAAACGCCGGTGAA
GGCATCACTGTCCAGCAGTCTGACTTGCGTGCATCATCAGCACAATAGGA
TTGGCAACGGCCGGCCTACCGTGGATCAGAAGCGTTTCATGCTATTGGCA
GGCAAGAGCTCTAAGGGTGTGTGTGGTAGATTAAGGGTTGACAACTAGGG
GGAAGGAGGAGGGAGGTTAGCTGTGCGCTGAAGCTTATACTTTTGTCTGA
TCCAATGCTGACTTCGAATTGTGGTGCGAGCACTCACCGTAGGTCAGGGT
GTAATTTGTCATGTTTTTTTCAGCTTTCTTTTTTTCTAATTTGGAAAAAA
AAAAACGCAGCTCAAGAAAAGCAGCTAAAAAAATCATGACCCAGTCCTCC
TCGCCGTCGCGACTGCGGTTCGCCAAGAAGGAAGGCCCATGCCTCGCACA
AGGTATCCTAGACATACTTCGCCTAGCAACAACCCCTGTGTGCTTTAAGC
GAAACTCAGTATCACCAAGCTTATGTAGCTTGTAGTCGAAGGCCTTGAAA
TAATTTGCCAGACACCTACTGGTGTTTTGGGGTCTCACTTCTCGTACTGA
CTGTAGACAATCTCGACAAACTTACTTCATATGCGCCATGGGTGCACTTC
GTGAGCCTGGCGGGATTACCACCAAATCTTGGTGTTCAACCGTCATCACA
CATGGAATTCTAGTTACGGACAAAAAGGAGAAGAGTGGAAAATCGTTCAC
GTCTTGTACAAAGTTATCAACTCGTACGGTGCATAGGAAGTATGACTTGA
CTTATGGGGTAGAGAGGCGCCGCTGTTTTACAGCCCTTCTAGTACTAGCC
GTTACAATCAGCCCAGACAAGTGGTTGGCATAGTTCTGTGCACAACCACT
GCAGCGCTCGATATAAGTTTTTGAACAGGCCTTCGGCGCCAACGAGTTTA
GCGATTCGAAGAAAGCTGGCGCCACCATATGCAGTACATCGAGCATACAA
TCTTGATTCCCAACGGAGAGCTCCTCACGGGTATCTCCTGTGTGAAATGT
TAGTTTTTTCATCAGGTGCACGACACTCTTGCATTGTATCTGATGGATCT
CAGTGTTGAAACTTGTTCGATTGCCAATGGTTAGGGCATGGCAATTGATT
TTCCTGTCAGAGGTGGTGCTTGGTTGCGTGAGAGGTGCTGCAACGGCTTG
TCGGTAGAGGTGTGCACTGACTTAGGGAATGCCCATGTACCCGCAGCCGG
GTTCTCGCCGGTTTCGTCTTTTATCAGCGCACCGGGTTTTCGGGGGAAGT
ATCGCCTTATTGAAGGAAAACCCCATGATCTGTTTCGTAGTCGGTGTATA
CTTGTAGCTGTCGGTGGCGGGCGGCTTTAGGAACGTGTCGGTGGCGGGCG
GCTTTAGGAACGTGTCGGTGGCAGAAGTGAATAATAGCTCTACGGTTGCA
AACTTGGCTTTACTACAGAAATTACGATACCTAGAGGAGAGGGCACGGTA
CAAACGAGACCTCGTGTTGTACACCGCTTCTCGTGCCGAAATACTCGTGA
TGATTCTCTAATAAACTTTGCCTATGGTGGTCAGCACTGATGGGTTTGTG
GTTAAACACTTACCTAGTTGGTGAAACAATCCAAAGTTGGTCGTAGGCTC
CCTAGCGACGCTCGGCAAGCGACCACTGAGCGTTTTCATTTTCTCAGTCC
GAAGATGCTGAATCCATTAATTAACCAGGGTAAAATGGCTGACTGACTTA
GGGGTATTATGATTAAAGCTGTGACTTCAATGAACTCTGCCTGTGCTTGA
AGCTGTTCGTGAATTTAGAGTCGCGGTCACATTGGAAGCTTGTACTAGGC
TTCTACTCTTCACTGCAAATATTTCCAGCAGTAAATTCTCCCTGGCTGAA
CCCCTCCCCCCGCCCACCTCCCGCGCCCCTTGCCATCTTCCGCTATATGT
TTGCCCATGTATGTGTATGAATTTATTCCAGAAGAGTTCTATGATCGAAA
GGGAGACCTTTGCTGGCTGCGCGTGGTGTCTCACTTGCGATCTCTGGCGT
CTCCGTTAGAAGATGAGCAGCGCAAGCTGATTATTACCGCCGGCGAGCGA
GCGTTTGCCCTGGCAGATGTGAAGATTACGCTTCATGGGTTCAGGCAGTG
CACCCTGTTCTGGTTGGCTGCTTGTCGACTCACTCGACGCGGGTGAGAAG
TTATTTCTGTATAGTAGTTGGTCATGATTTACTGCTAAATAGTATACATG
CTTCAAAAATAAATGTAAGGAAGGAAGGAAGGGAGCGGTGTGTTTTAAGC
GGTTTCCCTTCCTCCCTAAGAGCGAGAGTTGATGTATGTGCTCCGTGTGT
TTATTTTATGGCTAATTTTCTCGGGACTGGTACCCTTTGACCGCGGGTCC
TAGCCGTCGGACTGACGTGGTGCGGAACAAGACATATTGCTCTGGTAGAA
GTTGAAACCATGACCATTTTTTTGAAGATTTCCCGCAGGATGGTAAGCTG
GATCAGGTCTTTGGGGTTGATATTCAACTTTTGAAATGAGGAAAAGCTGG
AGGCAGTGTTCGGCAGGAAAATATTATTCCTGTCGTAGTTCTTTATTCTC
GGCTTTTTACACCCCAACCCCTCACTGTACCAGTCGCCGTGGGGCTCGAC
TTATACCCGATTATGATGGTGTGGTAAGCGGACTACTGCGTATTGTCATC
GTGTTAACCCCTTCAGTTAGCTTCCAGTGAGGAGAGGCCAACGATACAAA
GCAATTTGCTGGGGCTGTGTGCATCAAGTGTTCGTTTGATATATTTTCAA
GGTCGATTATTTTCGTCCTAAGCGCTTTAGAGAGTACACATGCCACATAC
CGGTATGTGCTAGTTGTATGAAAATAAGGGTTTGATCACTGTGCAAGGCG
TGTTGACCATGTACGTAAAGGAGAGGATGTCAGTGCCAGGGATTCATGCC
CGTGACACGACTTTGGTTACAACTACGCCATCCTCGTTATGCCGAATACT
TGTATACCCCTTGTATATTTGTTCCGATAATTTACCACCATCAGGACAAT
ACCGCCGGTATTATCTATTTTACACCGGTCTACATTCCGAAACGTCTGTC
ACGTTACCGTGCGAGGTAATGTAATTATGGTTTATCGGAAACAATGGCAC
CTGCTGAGTAGCACTGAACGGTGACCTCGACTGCTCCACGTGTTGCGTCG
ATTTGCATCGCGTCACTGCTCTTCTTTACTTCCCTTGGACGATCGACAAA
CACCAATTTACTTCCATGTATATCAGCATTGTTGGACGCACTTTCGATCG
TCGTGTCAATCTTCCGTTCCGTTTCGCAGGCATCCATTCATAACGGTAAC
GAAACCCGTCGCGATACGACTGTTCTGTTTGTCGCTACCCATTGATGTAT
CAAGCCCTCGATATGCTATTGCTGGTTTAGTTGTTTACTACATGCTTCGA
TCGTAATTTTGTCACCTTGGCCCGTTTTCGGTTTGGTTTTGTTTGGTCTT
GTTTGGTTTGGTTTTGTTTCGCATTGGTTCGTATCGGTTCATCTTGTTTC
GTTTCGTTTTGTTCAATTTCGTTTTGTTCCGTTTTGTTTCGTATCGGTTC
GTTCTGTTTCATTCCGTTTTGTTCAATTTCGTTTTGTTCCGTATCGGTTC
GTATCGGTTCGTTTCGTTTCGTTTCGTCCCTCGCGGCGGCGGCGGCGGAA
TCGCAGCTATCCGTTAACAATGGTGGCCCACCCGTCGAAGGCGAAATTTC
GCGATTTTTTGAACGGCCTGCGGAACGACAAGTCCATCTTCCCACCGCCC
AAGCCGGCGTCGTCGCCCTTGGTGTGCATCAGAGATTTGAATGCCCGCGG
TGCTTGCTACTACAGCAATGGTTACGCGGATGTTTGCCGAATGTTCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig15762:144..4042+

>mRNA_H-paniculata_contig15762.3340.1 ID=mRNA_H-paniculata_contig15762.3340.1|Name=mRNA_H-paniculata_contig15762.3340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1140bp|location=Sequence derived from alignment at H-paniculata_contig15762:144..4042+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGTCCCGCGCGGAAAGGAAGGCAACCGGTGGTGTCAAACGCCGGTGAA
GGCATCACTGTCCAGCAGTCTGACTTGCGTGCATCATCAGCACAATAGGA
TTGGCAACGGCCGGCCTACCGTGGATCAGAAGCGTTTCATGCTATTGGCA
GGCAAGAGCTCTAAGGCCCGTCCCGCGCGGAAAGGAAGGCAACCGGTGGT
GTCAAACGCCGGTGAAGGCATCACTGTCCAGCAGTCTGACTTGCGTGCAT
CATCAGCACAATAGGATTGGCAACGGCCGGCCTACCGTGGATCAGAAGCG
TTTCATGCTATTGGCAGGCAAGAGCTCTAAGGAAGAGTTCTATGATCGAA
AGGGAGACCTTTGCTGGCTGCGCGTGGTGTCTCACTTGCGATCTCTGGCG
TCTCCGTTAGAAGATGAGCAGCGCAAGCTGATTATTACCGCCGGCGAGCG
AGCGTTTGCCCTGGCAGATGTGAAGATTACGCTTCATGGGTTCAGGCAGT
GCACCCTGTTCTGGTTGGCTGCTTGTCGACTCACTCGACGCGGAAGAGTT
CTATGATCGAAAGGGAGACCTTTGCTGGCTGCGCGTGGTGTCTCACTTGC
GATCTCTGGCGTCTCCGTTAGAAGATGAGCAGCGCAAGCTGATTATTACC
GCCGGCGAGCGAGCGTTTGCCCTGGCAGATGTGAAGATTACGCTTCATGG
GTTCAGGCAGTGCACCCTGTTCTGGTTGGCTGCTTGTCGACTCACTCGAC
GCGGCTATCCGTTAACAATGGTGGCCCACCCGTCGAAGGCGAAATTTCGC
GATTTTTTGAACGGCCTGCGGAACGACAAGTCCATCTTCCCACCGCCCAA
GCCGGCGTCGTCGCCCTTGGTGTGCATCAGAGATTTGAATGCCCGCGGTG
CTTGCTACTACAGCAATGGTTACGCGGATGTTTGCCGAATGTTCTGACTA
TCCGTTAACAATGGTGGCCCACCCGTCGAAGGCGAAATTTCGCGATTTTT
TGAACGGCCTGCGGAACGACAAGTCCATCTTCCCACCGCCCAAGCCGGCG
TCGTCGCCCTTGGTGTGCATCAGAGATTTGAATGCCCGCGGTGCTTGCTA
CTACAGCAATGGTTACGCGGATGTTTGCCGAATGTTCTGA
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