mRNA_H-paniculata_contig10515.335.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10515.335.1
Unique NamemRNA_H-paniculata_contig10515.335.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10515.335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10515contigH-paniculata_contig10515:3346..7296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size590
Cds size330
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10515.335.1prot_H-paniculata_contig10515.335.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10515 4390..7296 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928753.744721-UTR-H-paniculata_contig10515:3345..34951622928753.744721-UTR-H-paniculata_contig10515:3345..3495Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10515 3346..3495 +
1691480606.7890925-UTR-H-paniculata_contig10515:3345..34951691480606.7890925-UTR-H-paniculata_contig10515:3345..3495Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10515 3346..3495 +
1622928753.7611275-UTR-H-paniculata_contig10515:4280..43891622928753.7611275-UTR-H-paniculata_contig10515:4280..4389Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10515 4281..4389 +
1691480606.7992885-UTR-H-paniculata_contig10515:4280..43891691480606.7992885-UTR-H-paniculata_contig10515:4280..4389Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10515 4281..4389 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928753.7717812-CDS-H-paniculata_contig10515:4389..45471622928753.7717812-CDS-H-paniculata_contig10515:4389..4547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10515 4390..4547 +
1691480606.8071818-CDS-H-paniculata_contig10515:4389..45471691480606.8071818-CDS-H-paniculata_contig10515:4389..4547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10515 4390..4547 +
1622928753.7850127-CDS-H-paniculata_contig10515:7124..72961622928753.7850127-CDS-H-paniculata_contig10515:7124..7296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10515 7125..7296 +
1691480606.8154056-CDS-H-paniculata_contig10515:7124..72961691480606.8154056-CDS-H-paniculata_contig10515:7124..7296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10515 7125..7296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10515.335.1

>prot_H-paniculata_contig10515.335.1 ID=prot_H-paniculata_contig10515.335.1|Name=mRNA_H-paniculata_contig10515.335.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
MAPWPCQDLVWIVVGLLCWLYPAGGLQPGGSVRTMRLHRKSQHHDHNSRN
KPRTTPLPLPPAKGGEGGGSGGKPPIPLSSITFELPRDRMVFKESRLRAG
GGAGGGAGVG
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mRNA from alignment at H-paniculata_contig10515:3346..7296+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10515.335.1 ID=mRNA_H-paniculata_contig10515.335.1|Name=mRNA_H-paniculata_contig10515.335.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3951bp|location=Sequence derived from alignment at H-paniculata_contig10515:3346..7296+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAACGACCCGCTGAAGTTACCCCCTCCCTTGAAGTTTTGCAAGCATGCAC
TGACGTCCTTGAGAGAGGTACTTCAACCGCTTCCATGGCCCTGAACTCGG
AATCTAGTATCGATTCTTCAGCCTTCCAGATTAGAAGAACAAGTCGGCAG
GTCAGTGACAGACAGCCCCCAAACCCGTTCGTCTAAAACCGAAACACAGA
TCGAAGAACAGAGTAACAGTACGAAAATGCATTGCTGTTTCAGGGTAGTT
TGCCTCCCACAGGCTTGATCTAGGTATGCTTATCGTGCTCTTTGAAGTGC
GATTTTATAGATGCAGGATACTCGTTGCTGTACAGAGATTGGCAGCTGCG
GGTCAAGTTGACAGCTCACGCAACACTGATAGACAGTGAATACAGACAGC
ACATTAGGCTGATCGTTATGATGATGTAACCCATGTGATGATGTTGTTCA
TGCCCGTACTTGTACCGTCTCTAACAGTTGTTCGCACAAGGTGAGGTAGT
AGAGTCGCTGGTGGGAGAAAATGTGACTTAGTGATGTGGCCTATTGCCAA
ATACAAGACTTGAGCTGCACAGACAGCGGTCACGCTGGCAGATTTTCTGG
TTACAAATTGTTGTAGGGTTTCAGAATGAAAAGAAAACGACAATGCGATG
CAGCTACTGTACGGCAGCTTCAAAATCACCAGTCATTGTTCAGTAAGTAC
ACGAAAACGTTTAACATTCAACAACGTTCACTTGTTAGCTGTTTGGACAG
ACCAATACACAGAGTTAAGAGCGAAGCACACCAACACAAATACAACGATG
TATTGTCAGTAGATAACAGAGAGTCAACAGAGTATGAGACAGTACGACCT
ACAGTACAGTACGTTGTATCCATATGAATAGCTTGTTGAAGCCTCGTTTC
TTGTTTCCTATATTGTACCTCTATCCCTCGAGCAGACAAGTCCTGGAGAA
GACCAGCACTACATCGCATATCGACAACACTTGCGGGCACACCTGGTGCA
TACTGTAATCAGCAAGGTACAGAGCAGACGAAGCAGCCATAACGATGGCT
CCCTGGCCGTGTCAGGACTTGGTATGGATTGTCGTAGGCCTCTTGTGCTG
GCTATATCCTGCAGGGGGTTTGCAGCCTGGAGGGTCCGTTCGCACAATGA
GGTTGCACAGGAAAAGCCAACACCATGACCACAATAGCAGGAACAAGCCC
AGGTCAGTATCTGTCCATTATATTTAATTGAATGTAATACAAATTTTACC
CTACTCTAGGCCGCTTCCTATGGGCATTCGAAACTTGCCTTTGAAAATTG
ATTTTTGCAAATAAAAGTGAAGAGAGGACATGCAGGCCGCTTTCGAAACC
TCGTGCGGCAGCCTCGTTATGTTGAACAAGAAGAGGTACCATTGGAGGGG
ACCTTTTCGCATGATGTACCGCCACGCTATGGCATGAACTATGCCAAGGA
CCACAGCCATCGCGCCTGCGATTTGAGTCGCATCATCTCGAGGGGAGAAA
ATATCAAACTCAGATCTACTGCAACACCATACACGTGGCAACACAACGAA
ACAACGAAGAGAGAGGGAGAAAGATTTCTGGCAGGACCAATATACCACGA
GAGTTCTGTAGCGAGCGACAGCCTCTGCGTGTATGGCGTCCTGGTATGCG
TGACGGTGCCCACAGGCACAGCAGCAGGTCATGTGCCGTTGTCGAGGCAG
TCGAAATATGACCACATGCCTGATTACGTAGTTGTTCATTGGGCGTAGGG
GGGGGGGATTCCTGTATGTAACAAAGCTGTTTCTTCTTTTTAGTTTTTTT
TTTTTCTCAGATGGTTGGATTCATTTCCCGTTCACTTTAGTTCTCCAATA
GCATTCATCACGCCACTTGTTCGAAAGGGGGATTTGAGCTCACAAGACCG
ATATCTTTACTACCTGGCTGGATGTTTTGACCTGAAATGGATCTGAGGTG
TGCCCAAAACAGGGTTTATATTTGTGCAATGCGCTAGCGACGCCGACTTG
AGCTCCGTCAAAGCAAACTATACCCTACAGGTTGGGGTTATAGTCAAGGC
TGGGGTTAGAAATCGACTCGGTCCTTGATCACGTTCGGGCATAAGAGCGT
GAACCACAAAAAGAATGATCGCCAACCGCTTTTTTCGACACAGTGTTTGC
CCCCGGTCGTGAGTTATACAACGAAAGATGAAGAACTGGAATAGCGGAGC
GGCTGCGTCATTAAACCTCGTGCACCTGGTAAAGATAGCAAAGATCTGGC
GCAGCAACACAAAGTTGCGAGTTCCAGAAGTTTCGTTAAGACCCTGCAGC
TCGCAATTCCTGGCATGTTTCGTTTGAGCGACCGCTTAGATATTGTCACC
GACGAAGCCCTGATTAACTCCTCTGCAGTGGGAACACATTCAAATTCTTG
TTGCCCGAGAGCACTGGGAAAGACCATACTCTTGTACTTCACGACCCTCC
TTTCGTCATACTCTTGAAACTCCAGGCCTATGGATTGCTTGTACCCCATC
ATTTCCAGAAACAGAGAAATGACAAGAAACGAGCGCTGCACATATTACAC
CAAAATAAAGAGACAGCATCCTTGCCCCTGTTCTTGTTGGCCATGTATGT
ACTAGTCATATATGTAGAGTTTAAAAATATGAAACATGACGCCTCAAACG
TAAAAAATAATGAAAAAAAAAGCCGCCTGTAGTAGGCATGTACCTTATAT
AGTCAAAATGCTCACTATTCAGCTGTATGTAACCCCCAAAAAGATACTAG
TGGCTCCTTGAGAACAGACCTCGCGAAGAAACCTGCGCATAGGAGTATGG
CTAGAGGCTCGCAAAGAGTATCATTATGGTCGATGAAGCCGTCTTGACCT
TACAGTACAAAGCCCTGGGTATGCACTTTGGACACTACATATCGTAGTTT
CCCAATTAAAGGCACAGTGCCTCAACGTAAGTGCCAGTTGTGATACTAAC
TGTAACGGAAAATTGTGTGGCCTTAGGGCATGTACGTTGGTTAAGGCCTG
TACTTCGGTTAAGGCCTGTACCTTGGTTAAGGCATGCACTTTGGTTAAGG
CATGTACTTTGGTTAAGGCCTGTACCTTGGTTAAGGCATGTACTTTGGTT
AAGGCATGTATTTTGGTTAAGGCCTGTACCTTGGTTAAGGCATGTACCTT
GGTTAAGGCCTGTACCTTGGTTAAGGCATGTACCTTGGTTAAGGCATGTA
CCTTGGTTAAGGCATGTACTTTGGTTAAGGCCTGTACCTTGGTTAAGGCC
TGTACCTTGGTAAGGCCTGTACCTTGGTTAAGGCCTGTACCTTGGTCAAG
GCATGTACTTTGGTTAAGGCCTGTACCTTGGTTAAGGCATGTACTTTAAT
TAAGGCATGTACTTTGGTTAAGGCCTGTACCTTGGTTAAGGCATGTACCT
TGGTTAAGGCATGTACCTTGGTTAAGGCATGTACTTTGGTTAAGGCCTGT
ACCTTGGTTAAGGCCTGTACCTTGGTTAAGGCATGTAACTTGGTTAAGGC
CTGTAACTTGGTTAAGGCCTGTACCTTTTCAAGCTGTGCCTTACAAGAAG
CTACCCATTGACCGTACTAGTATGGATGTATAGGACACATTATATTTATA
TATGAGACATTTATGTGCATGAACGGGAAGTGCTTTTTTTTCTTCCTCCT
TTGTTAGTAACTAGCTTACTTTCCTTTCATACAACTTACACTAGTATTAT
ATACATCAAATATCATACCCTATTATAATAAATCGCACATGAATATATTC
CACCATTTCGTGCAATGGCCCGTCACCAGGACGACACCCCTGCCGCTGCC
CCCAGCCAAGGGAGGGGAGGGAGGCGGGAGTGGCGGCAAGCCCCCAATTC
CGTTGTCGTCGATCACTTTCGAACTTCCTCGCGACAGAATGGTGTTCAAA
GAGAGCAGGTTAAGGGCAGGAGGAGGAGCTGGCGGAGGCGCGGGGGTTGG
G
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Coding sequence (CDS) from alignment at H-paniculata_contig10515:3346..7296+

>mRNA_H-paniculata_contig10515.335.1 ID=mRNA_H-paniculata_contig10515.335.1|Name=mRNA_H-paniculata_contig10515.335.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig10515:3346..7296+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTCCCTGGCCGTGTCAGGACTTGGTATGGATTGTCGTAGGCCTCTT
GTGCTGGCTATATCCTGCAGGGGGTTTGCAGCCTGGAGGGTCCGTTCGCA
CAATGAGGTTGCACAGGAAAAGCCAACACCATGACCACAATAGCAGGAAC
AAGCCCAGATGGCTCCCTGGCCGTGTCAGGACTTGGTATGGATTGTCGTA
GGCCTCTTGTGCTGGCTATATCCTGCAGGGGGTTTGCAGCCTGGAGGGTC
CGTTCGCACAATGAGGTTGCACAGGAAAAGCCAACACCATGACCACAATA
GCAGGAACAAGCCCAGGACGACACCCCTGCCGCTGCCCCCAGCCAAGGGA
GGGGAGGGAGGCGGGAGTGGCGGCAAGCCCCCAATTCCGTTGTCGTCGAT
CACTTTCGAACTTCCTCGCGACAGAATGGTGTTCAAAGAGAGCAGGTTAA
GGGCAGGAGGAGGAGCTGGCGGAGGCGCGGGGGTTGGGGACGACACCCCT
GCCGCTGCCCCCAGCCAAGGGAGGGGAGGGAGGCGGGAGTGGCGGCAAGC
CCCCAATTCCGTTGTCGTCGATCACTTTCGAACTTCCTCGCGACAGAATG
GTGTTCAAAGAGAGCAGGTTAAGGGCAGGAGGAGGAGCTGGCGGAGGCGC
GGGGGTTGGG
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