prot_H-paniculata_contig1571.3311.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig1571.3311.1
Unique Name	prot_H-paniculata_contig1571.3311.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	139

Homology

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BLAST of mRNA_H-paniculata_contig1571.3311.1 vs. uniprot
Match: A0A835ZH45_9STRA (DNA-directed RNA polymerases I n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH45_9STRA)

HSP 1 Score: 154 bits (388), Expect = 1.320e-45
Identity = 85/133 (63.91%), Postives = 105/133 (78.95%), Query Frame = 0

Query:   11 ADDGDAA--YDVFAQEDDEPQMDEEQVEETQDADMEIVDSGDVSGA--GA--LRAADDRITTKYMTKYERARILGTRALQISMNAPVMVDIESETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAIEELII 137
            +DDGD A  YD FA + DE   +E   E  Q   +E++++ +  GA  GA  ++ A +RIT+KYMTKYE+ARILGTRALQISMNAP+MVD+E+ TDPLKIA KELRERKIPIKIRRYLPDGS+EDWA+EEL+I
Sbjct:    2 SDDGDHADAYDAFADDGDEDMQEEVADEVGQAGQLELMEADETGGAAPGAPPVKPAQERITSKYMTKYEKARILGTRALQISMNAPIMVDLENMTDPLKIAEKELRERKIPIKIRRYLPDGSYEDWALEELMI 134

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BLAST of mRNA_H-paniculata_contig1571.3311.1 vs. uniprot
Match: A0A1Z5JVB2_FISSO (DNA-directed RNA polymerases I, II, and III subunit RPABC2 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JVB2_FISSO)

HSP 1 Score: 148 bits (373), Expect = 3.310e-43
Identity = 80/118 (67.80%), Postives = 96/118 (81.36%), Query Frame = 0

Query:   22 AQEDDEPQMDEEQVEETQDADMEIVDSGDVS-GAGALRAADDRITTKYMTKYERARILGTRALQISMNAPVMVDIESETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAIEELIID 138
            A EDDE Q D+E ++ T +    IV  G+ S G G   AA +RITT+Y+TKYE+AR+LGTRALQISMNAPVMVD++ ETDPLKIA KELRERKIPI IRRY+PDGSHEDWA++ELI+D
Sbjct:   28 AAEDDELQSDDEGLDVTGEH-TSIVGVGEGSEGGGRSVAAAERITTRYLTKYEKARVLGTRALQISMNAPVMVDLDGETDPLKIAEKELRERKIPIIIRRYMPDGSHEDWAVDELIVD 144

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BLAST of mRNA_H-paniculata_contig1571.3311.1 vs. uniprot
Match: A0A1Z5K9F7_FISSO (DNA-directed RNA polymerases I, II, and III subunit RPABC2 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K9F7_FISSO)

HSP 1 Score: 149 bits (376), Expect = 8.850e-43
Identity = 80/118 (67.80%), Postives = 95/118 (80.51%), Query Frame = 0

Query:   22 AQEDDEPQMDEEQVEETQDADMEIVDSGD-VSGAGALRAADDRITTKYMTKYERARILGTRALQISMNAPVMVDIESETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAIEELIID 138
            A EDDE Q DEE ++ T +    IV  G+   G G   AA +RITT+Y+TKYE+AR+LGTRALQISMNAPVMVD++ ETDPLKIA KELRERKIPI IRRY+PDGSHEDWA++ELI+D
Sbjct:   96 AAEDDEVQSDEEGLDVTGEH-TSIVGVGEGTEGGGRSVAAAERITTRYLTKYEKARVLGTRALQISMNAPVMVDLDGETDPLKIAEKELRERKIPIIIRRYMPDGSHEDWAVDELIVD 212

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BLAST of mRNA_H-paniculata_contig1571.3311.1 vs. uniprot
Match: A0A7R9ZBL4_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZBL4_9STRA)

HSP 1 Score: 146 bits (369), Expect = 2.120e-42
Identity = 84/134 (62.69%), Postives = 97/134 (72.39%), Query Frame = 0

Query:   10 GADDGDAA-----YDVFAQEDDEPQMDEEQVEETQDADMEIVDSGDVSGAGALRAADDRITTKYMTKYERARILGTRALQISMNAPVMVDIESETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAIEELIID 138
            GADDG         DV  + DD  Q D        + D E++ S    G GA  A  +R+TTKY+TKYERAR+LGTRALQISMNAPVMVD++ ETDPLKIAMKELRERKIPI IRRYLPDGSHEDW+I+ELI+D
Sbjct:   31 GADDGGRGGGNEDLDVTGERDDNAQEDMNAA--NNEGDGELLGSS-APGGGATGA--ERVTTKYLTKYERARVLGTRALQISMNAPVMVDLDGETDPLKIAMKELRERKIPIIIRRYLPDGSHEDWSIDELIVD 159

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BLAST of mRNA_H-paniculata_contig1571.3311.1 vs. uniprot
Match: A0A7S2E4M0_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E4M0_9STRA)

HSP 1 Score: 146 bits (368), Expect = 3.100e-42
Identity = 73/99 (73.74%), Postives = 85/99 (85.86%), Query Frame = 0

Query:   40 DADMEIVDSGDVSGAGALRAADDRITTKYMTKYERARILGTRALQISMNAPVMVDIESETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAIEELIID 138
            + D+E++ S   S  G  RA  +R+TTKY+TKYERAR+LGTRALQISMNAPVMVD++ ETDPLKIAMKELRERKIPI IRRYLPDGSHEDW I+ELI+D
Sbjct:   67 EGDLELLGS---SAPGGSRA--ERVTTKYLTKYERARVLGTRALQISMNAPVMVDLDGETDPLKIAMKELRERKIPIIIRRYLPDGSHEDWKIDELIVD 160

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BLAST of mRNA_H-paniculata_contig1571.3311.1 vs. uniprot
Match: A0A7S2Y910_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y910_9STRA)

HSP 1 Score: 146 bits (368), Expect = 3.500e-42
Identity = 71/94 (75.53%), Postives = 81/94 (86.17%), Query Frame = 0

Query:   45 IVDSGDVSGAGALRAADDRITTKYMTKYERARILGTRALQISMNAPVMVDIESETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAIEELIID 138
            +V  G+   +   RAA +RITTKY+TKYERAR+LGTRALQISMNAPVMVD++ ETDPL+IA KELRERKIPI IRRYLPDGSHEDW I+ELIID
Sbjct:   71 VVGMGNSDPSSQGRAATERITTKYLTKYERARVLGTRALQISMNAPVMVDLDGETDPLRIAEKELRERKIPIIIRRYLPDGSHEDWKIDELIID 164

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BLAST of mRNA_H-paniculata_contig1571.3311.1 vs. uniprot
Match: A0A8B7XNY9_ACAPL (RPB6 homolog n=3 Tax=Asteroidea TaxID=7588 RepID=A0A8B7XNY9_ACAPL)

HSP 1 Score: 144 bits (364), Expect = 4.720e-42
Identity = 74/112 (66.07%), Postives = 91/112 (81.25%), Query Frame = 0

Query:   27 EPQMDEEQVEETQDADMEIVDSGDVSGAGALRAADDRITTKYMTKYERARILGTRALQISMNAPVMVDIESETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAIEELIID 138
            E  +D+E +E+ QD + E  ++ DV  AG  +   +RITT YMTKYERAR+LGTRALQI+MNAPVMV++E ETDPL+IAMKEL+ RKIPI IRRYLPDGS+EDW I+ELIID
Sbjct:   16 EDDVDDEPLEDMQDVEEEGGENIDVLPAGEGQQQTERITTPYMTKYERARVLGTRALQIAMNAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDGSYEDWGIDELIID 127

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BLAST of mRNA_H-paniculata_contig1571.3311.1 vs. uniprot
Match: A0A6U0JRN7_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0JRN7_9STRA)

HSP 1 Score: 147 bits (370), Expect = 4.770e-42
Identity = 71/99 (71.72%), Postives = 84/99 (84.85%), Query Frame = 0

Query:   40 DADMEIVDSGDVSGAGALRAADDRITTKYMTKYERARILGTRALQISMNAPVMVDIESETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAIEELIID 138
            D D+E++ S    G  A     +R+TT+Y+TKYERAR+LGTRALQISMNAPVMVD++ ETDPLKIAMKELRERKIPI IRRYLPDGSHEDW+I+ELI+D
Sbjct:  105 DGDLELLGSAAPGGGAA-----ERVTTRYLTKYERARVLGTRALQISMNAPVMVDLDGETDPLKIAMKELRERKIPIIIRRYLPDGSHEDWSIDELIVD 198

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BLAST of mRNA_H-paniculata_contig1571.3311.1 vs. uniprot
Match: B8C3F5_THAPS (Dna-directed RNA polymerase i (Fragment) n=2 Tax=Bacillariophyta TaxID=2836 RepID=B8C3F5_THAPS)

HSP 1 Score: 141 bits (356), Expect = 1.620e-41
Identity = 66/76 (86.84%), Postives = 72/76 (94.74%), Query Frame = 0

Query:   63 RITTKYMTKYERARILGTRALQISMNAPVMVDIESETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAIEELIID 138
            RITT+Y+TKYERAR+LGTRALQISMNAPVMVD+E ETDPLKIA KELRERKIPI IRRYLPDGSHEDW I+ELI+D
Sbjct:    1 RITTRYLTKYERARVLGTRALQISMNAPVMVDLEGETDPLKIAQKELRERKIPIVIRRYLPDGSHEDWGIDELIVD 76

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BLAST of mRNA_H-paniculata_contig1571.3311.1 vs. uniprot
Match: A0A6U3VZ54_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3VZ54_9STRA)

HSP 1 Score: 144 bits (364), Expect = 3.640e-41
Identity = 68/98 (69.39%), Postives = 86/98 (87.76%), Query Frame = 0

Query:   42 DMEIVDSGDVSGAGALRAA-DDRITTKYMTKYERARILGTRALQISMNAPVMVDIESETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAIEELIID 138
            D+ +++ G++   G+  +A  +R+TT+Y+TKYERAR+LGTRALQISMNAPVMVD++ ETDPLKIAM+ELRERKIPI IRRYLPDGSHEDW I+ELI+D
Sbjct:   99 DVNVMNEGEMEILGSSGSALSERVTTRYLTKYERARVLGTRALQISMNAPVMVDLDGETDPLKIAMRELRERKIPIIIRRYLPDGSHEDWKIDELIVD 196

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig1571.3311.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig1571.3311.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835ZH45_9STRA	1.320e-45	63.91	DNA-directed RNA polymerases I n=1 Tax=Tribonema m...	[more]
A0A1Z5JVB2_FISSO	3.310e-43	67.80	DNA-directed RNA polymerases I, II, and III subuni...	[more]
A0A1Z5K9F7_FISSO	8.850e-43	67.80	DNA-directed RNA polymerases I, II, and III subuni...	[more]
A0A7R9ZBL4_9STRA	2.120e-42	62.69	Hypothetical protein n=1 Tax=Pseudictyota dubia Ta...	[more]
A0A7S2E4M0_9STRA	3.100e-42	73.74	Hypothetical protein n=1 Tax=Helicotheca tamesis T...	[more]
A0A7S2Y910_9STRA	3.500e-42	75.53	Hypothetical protein n=1 Tax=Amphiprora paludosa T...	[more]
A0A8B7XNY9_ACAPL	4.720e-42	66.07	RPB6 homolog n=3 Tax=Asteroidea TaxID=7588 RepID=A...	[more]
A0A6U0JRN7_9STRA	4.770e-42	71.72	Hypothetical protein n=1 Tax=Minutocellus polymorp...	[more]
B8C3F5_THAPS	1.620e-41	86.84	Dna-directed RNA polymerase i (Fragment) n=2 Tax=B...	[more]
A0A6U3VZ54_9STRA	3.640e-41	69.39	Hypothetical protein n=1 Tax=Ditylum brightwellii ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006110	RNA polymerase, subunit omega/K/RPB6	SMART	SM01409	RNA_pol_Rpb6_2	coord: 63..116 e-value: 6.7E-7 score: 38.9
IPR006110	RNA polymerase, subunit omega/K/RPB6	PFAM	PF01192	RNA_pol_Rpb6	coord: 63..116 e-value: 4.0E-17 score: 61.9
IPR006111	Archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit	PIRSF	PIRSF000778	RpoK/RPB6	coord: 1..138 e-value: 1.1E-47 score: 159.4
IPR006111	Archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit	HAMAP	MF_00192	RNApol_arch_K	coord: 67..122 score: 18.792
IPR028363	DNA-directed RNA polymerase, subunit RPB6	PIRSF	PIRSF500154	RPB6	coord: 1..138 e-value: 3.7E-51 score: 170.9
IPR012293	RNA polymerase subunit, RPB6/omega	GENE3D	3.90.940.10		coord: 1..138 e-value: 8.7E-50 score: 169.9
None	No IPR available	PANTHER	PTHR47227	FAMILY NOT NAMED	coord: 1..137
IPR020708	DNA-directed RNA polymerase, 14-18kDa subunit, conserved site	PROSITE	PS01111	RNA_POL_K_14KD	coord: 70..84
IPR036161	RPB6/omega subunit-like superfamily	SUPERFAMILY	63562	RPB6/omega subunit-like	coord: 22..138

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig1571	contig	H-paniculata_contig1571:305..6782 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig1571.3311.1	mRNA_H-paniculata_contig1571.3311.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig1571 238..7411 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig1571.3311.1 ID=prot_H-paniculata_contig1571.3311.1|Name=mRNA_H-paniculata_contig1571.3311.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp
MSDNEANYDGADDGDAAYDVFAQEDDEPQMDEEQVEETQDADMEIVDSGD
VSGAGALRAADDRITTKYMTKYERARILGTRALQISMNAPVMVDIESETD
PLKIAMKELRERKIPIKIRRYLPDGSHEDWAIEELIID*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006110	Pol_omega/K/RPB6
IPR006111	RpoK/Rpb6
IPR028363	RPB6
IPR012293	RNAP_RPB6_omega
IPR020708	DNA-dir_RNA_polK_14-18kDa_CS
IPR036161	RPB6/omega-like_sf