prot_H-paniculata_contig10508.329.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig10508.329.1
Unique Nameprot_H-paniculata_contig10508.329.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length66
Homology
BLAST of mRNA_H-paniculata_contig10508.329.1 vs. uniprot
Match: D7FNN0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNN0_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 4.580e-20
Identity = 43/62 (69.35%), Postives = 48/62 (77.42%), Query Frame = 0
Query:    2 RYDGGRSSASSFMLTQYGVCCFRFKDEDGSLEARPFNAFVFPSTKFRTDRVFSCQSSSMDFL 63
            RYD  R S S FMLTQYG+CCFR+ DE   LEARPFN FV PST   +DRV+SCQ+SSMDFL
Sbjct:   51 RYDLARGSCSQFMLTQYGICCFRYHDE--RLEARPFNCFVVPSTYHGSDRVYSCQASSMDFL 110          
BLAST of mRNA_H-paniculata_contig10508.329.1 vs. uniprot
Match: A0A6F9DPQ5_9ASCI (Poly(A)-specific ribonuclease PARN n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DPQ5_9ASCI)

HSP 1 Score: 62.0 bits (149), Expect = 1.240e-9
Identity = 29/65 (44.62%), Postives = 41/65 (63.08%), Query Frame = 0
Query:    2 RYDGGRSSASSFMLTQYGVCCFRFKDEDGSLEARPFNAFVFP---STKFRTDRVFSCQSSSMDFL 63
            RY    S+  +F+L Q+G+C FR+ DE    +A  FN ++FP   +     DR+FSCQSSS+DFL
Sbjct:   50 RYLKLHSNTHNFLLIQFGMCAFRWSDESQKYKAEAFNFYIFPLKSTVSGVPDRIFSCQSSSLDFL 114          
BLAST of mRNA_H-paniculata_contig10508.329.1 vs. uniprot
Match: A0A507EAB4_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507EAB4_9FUNG)

HSP 1 Score: 60.5 bits (145), Expect = 4.310e-9
Identity = 30/66 (45.45%), Postives = 40/66 (60.61%), Query Frame = 0
Query:    2 RYDGGRSSASSFMLTQYGVCCFRFKDEDGSLEARPFNAFVFPSTKFRT---DRVFSCQSSSMDFLR 64
            RY   + SA +F  TQYG+C F +        A+PFN +VFP+T  R    DR F+CQ+SS+ FLR
Sbjct:   51 RYAKCKMSAEAFQTTQYGLCTFSWDAAKHKYIAKPFNCYVFPATGNRVLGLDRHFTCQASSLSFLR 116          
BLAST of mRNA_H-paniculata_contig10508.329.1 vs. uniprot
Match: F6PI67_CIOIN (Poly(A)-specific ribonuclease PARN n=2 Tax=Ciona intestinalis TaxID=7719 RepID=F6PI67_CIOIN)

HSP 1 Score: 58.2 bits (139), Expect = 2.800e-8
Identity = 28/68 (41.18%), Postives = 43/68 (63.24%), Query Frame = 0
Query:    2 RYDGGRSSASSFMLTQYGVCCFRFKDEDGSLEARPFNAFVFPSTKFRT------DRVFSCQSSSMDFL 63
            RY    S+  +FML Q+G+C F +K+++   +   FN ++FP   FR+      DR+FSCQ+SS+DFL
Sbjct:   50 RYLKLHSNTENFMLLQFGMCTFSWKEDEQKYQVDAFNFYIFP---FRSSFPGVPDRIFSCQASSLDFL 114          
BLAST of mRNA_H-paniculata_contig10508.329.1 vs. uniprot
Match: UPI000D166FB0 (poly(A)-specific ribonuclease PARN-like isoform X4 n=1 Tax=Physcomitrium patens TaxID=3218 RepID=UPI000D166FB0)

HSP 1 Score: 57.0 bits (136), Expect = 7.150e-8
Identity = 25/62 (40.32%), Postives = 39/62 (62.90%), Query Frame = 0
Query:    3 YDGGRSSASSFMLTQYGVCCFRFKDEDGSLEARPFNAFVFPSTKFRTDRVFSCQSSSMDFLR 64
            Y   R+SA  F++ Q+G+  F +  ED   +A+ FN + FP +   +D  F+CQ+SS+DFLR
Sbjct:  125 YARVRTSAQHFLIMQFGLSAFHWNVEDSCYQAQTFNFYTFPRSNGGSDVRFTCQASSLDFLR 186          
BLAST of mRNA_H-paniculata_contig10508.329.1 vs. uniprot
Match: A0A2K1KWH0_PHYPA (Uncharacterized protein n=4 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KWH0_PHYPA)

HSP 1 Score: 57.0 bits (136), Expect = 7.190e-8
Identity = 25/62 (40.32%), Postives = 39/62 (62.90%), Query Frame = 0
Query:    3 YDGGRSSASSFMLTQYGVCCFRFKDEDGSLEARPFNAFVFPSTKFRTDRVFSCQSSSMDFLR 64
            Y   R+SA  F++ Q+G+  F +  ED   +A+ FN + FP +   +D  F+CQ+SS+DFLR
Sbjct:   52 YARVRTSAQHFLIMQFGLSAFHWNVEDSCYQAQTFNFYTFPRSNGGSDVRFTCQASSLDFLR 113          
BLAST of mRNA_H-paniculata_contig10508.329.1 vs. uniprot
Match: A0A498NWX0_LABRO (Poly(A)-specific ribonuclease PARN isoform X2 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498NWX0_LABRO)

HSP 1 Score: 54.7 bits (130), Expect = 1.010e-7
Identity = 26/64 (40.62%), Postives = 37/64 (57.81%), Query Frame = 0
Query:    2 RYDGGRSSASSFMLTQYGVCCFRFKDEDGSLEARPFNAFVFPSTKFRT--DRVFSCQSSSMDFL 63
            RY   R  + +F+L Q+G+C FR+     +   + FN ++FP    RT  D  F CQSSS+DFL
Sbjct:   11 RYTKLRKHSMNFLLLQFGLCTFRYDQNQSTYVTKAFNFYIFPKPFSRTSPDIKFICQSSSIDFL 74          
BLAST of mRNA_H-paniculata_contig10508.329.1 vs. uniprot
Match: L7X1H3_HELEA (Poly(A)-specific ribonuclease PARN-like protein n=1 Tax=Heliconius erato TaxID=33431 RepID=L7X1H3_HELEA)

HSP 1 Score: 55.8 bits (133), Expect = 1.830e-7
Identity = 24/61 (39.34%), Postives = 38/61 (62.30%), Query Frame = 0
Query:    3 YDGGRSSASSFMLTQYGVCCFRFKDEDGSLEARPFNAFVFPSTKFRTDRVFSCQSSSMDFL 63
            Y+   + ++ F+L QYG+C F + DE+       +N F+FP  +   D++F CQSSS+DFL
Sbjct:   50 YNTLLNGSTDFLLIQYGLCAFYWNDEEKHYMNDAYNFFLFPRGRPGPDKIFLCQSSSLDFL 110          
BLAST of mRNA_H-paniculata_contig10508.329.1 vs. uniprot
Match: A0A673J6J5_9TELE (Poly(A)-specific ribonuclease n=3 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=A0A673J6J5_9TELE)

HSP 1 Score: 55.8 bits (133), Expect = 1.840e-7
Identity = 27/64 (42.19%), Postives = 38/64 (59.38%), Query Frame = 0
Query:    2 RYDGGRSSASSFMLTQYGVCCFRFKDEDGSLEARPFNAFVFPSTKFRT--DRVFSCQSSSMDFL 63
            RY   R  + +F+L Q+G+C FR++    S   + FN ++FP    RT  D  F CQSSS+DFL
Sbjct:   55 RYTKLRKHSMNFLLFQFGLCTFRYEQNQSSYITKAFNFYIFPKPFSRTSPDIKFICQSSSIDFL 118          
BLAST of mRNA_H-paniculata_contig10508.329.1 vs. uniprot
Match: A0A8C2HJA5_CYPCA (Poly(A)-specific ribonuclease (deadenylation nuclease) n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2HJA5_CYPCA)

HSP 1 Score: 55.5 bits (132), Expect = 2.530e-7
Identity = 27/64 (42.19%), Postives = 37/64 (57.81%), Query Frame = 0
Query:    2 RYDGGRSSASSFMLTQYGVCCFRFKDEDGSLEARPFNAFVFPSTKFRT--DRVFSCQSSSMDFL 63
            RY   R  + +F+L Q+GVC FR+     +   + FN ++FP    RT  D  F CQSSS+DFL
Sbjct:   53 RYTKLRKHSMNFLLFQFGVCTFRYDQNQSTYVTKAFNFYIFPKPFSRTSPDIKFICQSSSIDFL 116          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10508.329.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNN0_ECTSI4.580e-2069.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6F9DPQ5_9ASCI1.240e-944.62Poly(A)-specific ribonuclease PARN n=1 Tax=Phallus... [more]
A0A507EAB4_9FUNG4.310e-945.45Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]
F6PI67_CIOIN2.800e-841.18Poly(A)-specific ribonuclease PARN n=2 Tax=Ciona i... [more]
UPI000D166FB07.150e-840.32poly(A)-specific ribonuclease PARN-like isoform X4... [more]
A0A2K1KWH0_PHYPA7.190e-840.32Uncharacterized protein n=4 Tax=Physcomitrium pate... [more]
A0A498NWX0_LABRO1.010e-740.63Poly(A)-specific ribonuclease PARN isoform X2 n=1 ... [more]
L7X1H3_HELEA1.830e-739.34Poly(A)-specific ribonuclease PARN-like protein n=... [more]
A0A673J6J5_9TELE1.840e-742.19Poly(A)-specific ribonuclease n=3 Tax=Sinocycloche... [more]
A0A8C2HJA5_CYPCA2.530e-742.19Poly(A)-specific ribonuclease (deadenylation nucle... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..66
e-value: 6.3E-14
score: 53.7
IPR006941Ribonuclease CAF1PFAMPF04857CAF1coord: 2..65
e-value: 4.2E-13
score: 49.2
NoneNo IPR availablePANTHERPTHR15092POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1coord: 2..64
NoneNo IPR availablePANTHERPTHR15092:SF22POLY(A)-SPECIFIC RIBONUCLEASE PARNcoord: 2..64
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 2..64

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10508contigH-paniculata_contig10508:154..351 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10508.329.1mRNA_H-paniculata_contig10508.329.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig10508 154..354 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig10508.329.1 ID=prot_H-paniculata_contig10508.329.1|Name=mRNA_H-paniculata_contig10508.329.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
MRYDGGRSSASSFMLTQYGVCCFRFKDEDGSLEARPFNAFVFPSTKFRTD
RVFSCQSSSMDFLRYN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR006941RNase_CAF1
IPR012337RNaseH-like_sf