mRNA_H-paniculata_contig10508.329.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig10508.329.1 vs. uniprot
Match: D7FNN0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNN0_ECTSI) HSP 1 Score: 93.2 bits (230), Expect = 1.370e-20 Identity = 44/64 (68.75%), Postives = 49/64 (76.56%), Query Frame = 1 Query: 1 QMRYDGGRSSASSFMLTQYGVCCFRFKDEDGSLEARPFNAFVFPSTKFRTDRVFSCQSSSMDFL 192 Q RYD R S S FMLTQYG+CCFR+ DE LEARPFN FV PST +DRV+SCQ+SSMDFL Sbjct: 49 QARYDLARGSCSQFMLTQYGICCFRYHDE--RLEARPFNCFVVPSTYHGSDRVYSCQASSMDFL 110
BLAST of mRNA_H-paniculata_contig10508.329.1 vs. uniprot
Match: A0A6F9DPQ5_9ASCI (Poly(A)-specific ribonuclease PARN n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DPQ5_9ASCI) HSP 1 Score: 62.0 bits (149), Expect = 1.290e-9 Identity = 29/65 (44.62%), Postives = 41/65 (63.08%), Query Frame = 1 Query: 7 RYDGGRSSASSFMLTQYGVCCFRFKDEDGSLEARPFNAFVFP---STKFRTDRVFSCQSSSMDFL 192 RY S+ +F+L Q+G+C FR+ DE +A FN ++FP + DR+FSCQSSS+DFL Sbjct: 50 RYLKLHSNTHNFLLIQFGMCAFRWSDESQKYKAEAFNFYIFPLKSTVSGVPDRIFSCQSSSLDFL 114
BLAST of mRNA_H-paniculata_contig10508.329.1 vs. uniprot
Match: A0A507EAB4_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507EAB4_9FUNG) HSP 1 Score: 61.6 bits (148), Expect = 1.760e-9 Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 1 Query: 1 QMRYDGGRSSASSFMLTQYGVCCFRFKDEDGSLEARPFNAFVFPSTKFRT---DRVFSCQSSSMDFLR 195 Q RY + SA +F TQYG+C F + A+PFN +VFP+T R DR F+CQ+SS+ FLR Sbjct: 49 QERYAKCKMSAEAFQTTQYGLCTFSWDAAKHKYIAKPFNCYVFPATGNRVLGLDRHFTCQASSLSFLR 116
BLAST of mRNA_H-paniculata_contig10508.329.1 vs. uniprot
Match: F6PI67_CIOIN (Poly(A)-specific ribonuclease PARN n=2 Tax=Ciona intestinalis TaxID=7719 RepID=F6PI67_CIOIN) HSP 1 Score: 58.2 bits (139), Expect = 2.920e-8 Identity = 28/68 (41.18%), Postives = 43/68 (63.24%), Query Frame = 1 Query: 7 RYDGGRSSASSFMLTQYGVCCFRFKDEDGSLEARPFNAFVFPSTKFRT------DRVFSCQSSSMDFL 192 RY S+ +FML Q+G+C F +K+++ + FN ++FP FR+ DR+FSCQ+SS+DFL Sbjct: 50 RYLKLHSNTENFMLLQFGMCTFSWKEDEQKYQVDAFNFYIFP---FRSSFPGVPDRIFSCQASSLDFL 114
BLAST of mRNA_H-paniculata_contig10508.329.1 vs. uniprot
Match: UPI000D166FB0 (poly(A)-specific ribonuclease PARN-like isoform X4 n=1 Tax=Physcomitrium patens TaxID=3218 RepID=UPI000D166FB0) HSP 1 Score: 57.0 bits (136), Expect = 7.440e-8 Identity = 25/62 (40.32%), Postives = 39/62 (62.90%), Query Frame = 1 Query: 10 YDGGRSSASSFMLTQYGVCCFRFKDEDGSLEARPFNAFVFPSTKFRTDRVFSCQSSSMDFLR 195 Y R+SA F++ Q+G+ F + ED +A+ FN + FP + +D F+CQ+SS+DFLR Sbjct: 125 YARVRTSAQHFLIMQFGLSAFHWNVEDSCYQAQTFNFYTFPRSNGGSDVRFTCQASSLDFLR 186
BLAST of mRNA_H-paniculata_contig10508.329.1 vs. uniprot
Match: A0A2K1KWH0_PHYPA (Uncharacterized protein n=4 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KWH0_PHYPA) HSP 1 Score: 57.0 bits (136), Expect = 7.490e-8 Identity = 25/62 (40.32%), Postives = 39/62 (62.90%), Query Frame = 1 Query: 10 YDGGRSSASSFMLTQYGVCCFRFKDEDGSLEARPFNAFVFPSTKFRTDRVFSCQSSSMDFLR 195 Y R+SA F++ Q+G+ F + ED +A+ FN + FP + +D F+CQ+SS+DFLR Sbjct: 52 YARVRTSAQHFLIMQFGLSAFHWNVEDSCYQAQTFNFYTFPRSNGGSDVRFTCQASSLDFLR 113
BLAST of mRNA_H-paniculata_contig10508.329.1 vs. uniprot
Match: A0A498NWX0_LABRO (Poly(A)-specific ribonuclease PARN isoform X2 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498NWX0_LABRO) HSP 1 Score: 54.7 bits (130), Expect = 1.050e-7 Identity = 26/64 (40.62%), Postives = 37/64 (57.81%), Query Frame = 1 Query: 7 RYDGGRSSASSFMLTQYGVCCFRFKDEDGSLEARPFNAFVFPSTKFRT--DRVFSCQSSSMDFL 192 RY R + +F+L Q+G+C FR+ + + FN ++FP RT D F CQSSS+DFL Sbjct: 11 RYTKLRKHSMNFLLLQFGLCTFRYDQNQSTYVTKAFNFYIFPKPFSRTSPDIKFICQSSSIDFL 74
BLAST of mRNA_H-paniculata_contig10508.329.1 vs. uniprot
Match: L7X1H3_HELEA (Poly(A)-specific ribonuclease PARN-like protein n=1 Tax=Heliconius erato TaxID=33431 RepID=L7X1H3_HELEA) HSP 1 Score: 56.2 bits (134), Expect = 1.400e-7 Identity = 25/64 (39.06%), Postives = 39/64 (60.94%), Query Frame = 1 Query: 1 QMRYDGGRSSASSFMLTQYGVCCFRFKDEDGSLEARPFNAFVFPSTKFRTDRVFSCQSSSMDFL 192 Q Y+ + ++ F+L QYG+C F + DE+ +N F+FP + D++F CQSSS+DFL Sbjct: 47 QEYYNTLLNGSTDFLLIQYGLCAFYWNDEEKHYMNDAYNFFLFPRGRPGPDKIFLCQSSSLDFL 110
BLAST of mRNA_H-paniculata_contig10508.329.1 vs. uniprot
Match: A0A673J6J5_9TELE (Poly(A)-specific ribonuclease n=3 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=A0A673J6J5_9TELE) HSP 1 Score: 55.8 bits (133), Expect = 1.910e-7 Identity = 27/64 (42.19%), Postives = 38/64 (59.38%), Query Frame = 1 Query: 7 RYDGGRSSASSFMLTQYGVCCFRFKDEDGSLEARPFNAFVFPSTKFRT--DRVFSCQSSSMDFL 192 RY R + +F+L Q+G+C FR++ S + FN ++FP RT D F CQSSS+DFL Sbjct: 55 RYTKLRKHSMNFLLFQFGLCTFRYEQNQSSYITKAFNFYIFPKPFSRTSPDIKFICQSSSIDFL 118
BLAST of mRNA_H-paniculata_contig10508.329.1 vs. uniprot
Match: A0A8C2HJA5_CYPCA (Poly(A)-specific ribonuclease (deadenylation nuclease) n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2HJA5_CYPCA) HSP 1 Score: 55.5 bits (132), Expect = 2.640e-7 Identity = 27/64 (42.19%), Postives = 37/64 (57.81%), Query Frame = 1 Query: 7 RYDGGRSSASSFMLTQYGVCCFRFKDEDGSLEARPFNAFVFPSTKFRT--DRVFSCQSSSMDFL 192 RY R + +F+L Q+GVC FR+ + + FN ++FP RT D F CQSSS+DFL Sbjct: 53 RYTKLRKHSMNFLLFQFGVCTFRYDQNQSTYVTKAFNFYIFPKPFSRTSPDIKFICQSSSIDFL 116 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10508.329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10508.329.1 >prot_H-paniculata_contig10508.329.1 ID=prot_H-paniculata_contig10508.329.1|Name=mRNA_H-paniculata_contig10508.329.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp MRYDGGRSSASSFMLTQYGVCCFRFKDEDGSLEARPFNAFVFPSTKFRTDback to top mRNA from alignment at H-paniculata_contig10508:154..354- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig10508.329.1 ID=mRNA_H-paniculata_contig10508.329.1|Name=mRNA_H-paniculata_contig10508.329.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=201bp|location=Sequence derived from alignment at H-paniculata_contig10508:154..354- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig10508:154..354- >mRNA_H-paniculata_contig10508.329.1 ID=mRNA_H-paniculata_contig10508.329.1|Name=mRNA_H-paniculata_contig10508.329.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig10508:154..354- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |