mRNA_H-paniculata_contig10508.329.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10508.329.1
Unique NamemRNA_H-paniculata_contig10508.329.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig10508.329.1 vs. uniprot
Match: D7FNN0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNN0_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.370e-20
Identity = 44/64 (68.75%), Postives = 49/64 (76.56%), Query Frame = 1
Query:    1 QMRYDGGRSSASSFMLTQYGVCCFRFKDEDGSLEARPFNAFVFPSTKFRTDRVFSCQSSSMDFL 192
            Q RYD  R S S FMLTQYG+CCFR+ DE   LEARPFN FV PST   +DRV+SCQ+SSMDFL
Sbjct:   49 QARYDLARGSCSQFMLTQYGICCFRYHDE--RLEARPFNCFVVPSTYHGSDRVYSCQASSMDFL 110          
BLAST of mRNA_H-paniculata_contig10508.329.1 vs. uniprot
Match: A0A6F9DPQ5_9ASCI (Poly(A)-specific ribonuclease PARN n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DPQ5_9ASCI)

HSP 1 Score: 62.0 bits (149), Expect = 1.290e-9
Identity = 29/65 (44.62%), Postives = 41/65 (63.08%), Query Frame = 1
Query:    7 RYDGGRSSASSFMLTQYGVCCFRFKDEDGSLEARPFNAFVFP---STKFRTDRVFSCQSSSMDFL 192
            RY    S+  +F+L Q+G+C FR+ DE    +A  FN ++FP   +     DR+FSCQSSS+DFL
Sbjct:   50 RYLKLHSNTHNFLLIQFGMCAFRWSDESQKYKAEAFNFYIFPLKSTVSGVPDRIFSCQSSSLDFL 114          
BLAST of mRNA_H-paniculata_contig10508.329.1 vs. uniprot
Match: A0A507EAB4_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507EAB4_9FUNG)

HSP 1 Score: 61.6 bits (148), Expect = 1.760e-9
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 1
Query:    1 QMRYDGGRSSASSFMLTQYGVCCFRFKDEDGSLEARPFNAFVFPSTKFRT---DRVFSCQSSSMDFLR 195
            Q RY   + SA +F  TQYG+C F +        A+PFN +VFP+T  R    DR F+CQ+SS+ FLR
Sbjct:   49 QERYAKCKMSAEAFQTTQYGLCTFSWDAAKHKYIAKPFNCYVFPATGNRVLGLDRHFTCQASSLSFLR 116          
BLAST of mRNA_H-paniculata_contig10508.329.1 vs. uniprot
Match: F6PI67_CIOIN (Poly(A)-specific ribonuclease PARN n=2 Tax=Ciona intestinalis TaxID=7719 RepID=F6PI67_CIOIN)

HSP 1 Score: 58.2 bits (139), Expect = 2.920e-8
Identity = 28/68 (41.18%), Postives = 43/68 (63.24%), Query Frame = 1
Query:    7 RYDGGRSSASSFMLTQYGVCCFRFKDEDGSLEARPFNAFVFPSTKFRT------DRVFSCQSSSMDFL 192
            RY    S+  +FML Q+G+C F +K+++   +   FN ++FP   FR+      DR+FSCQ+SS+DFL
Sbjct:   50 RYLKLHSNTENFMLLQFGMCTFSWKEDEQKYQVDAFNFYIFP---FRSSFPGVPDRIFSCQASSLDFL 114          
BLAST of mRNA_H-paniculata_contig10508.329.1 vs. uniprot
Match: UPI000D166FB0 (poly(A)-specific ribonuclease PARN-like isoform X4 n=1 Tax=Physcomitrium patens TaxID=3218 RepID=UPI000D166FB0)

HSP 1 Score: 57.0 bits (136), Expect = 7.440e-8
Identity = 25/62 (40.32%), Postives = 39/62 (62.90%), Query Frame = 1
Query:   10 YDGGRSSASSFMLTQYGVCCFRFKDEDGSLEARPFNAFVFPSTKFRTDRVFSCQSSSMDFLR 195
            Y   R+SA  F++ Q+G+  F +  ED   +A+ FN + FP +   +D  F+CQ+SS+DFLR
Sbjct:  125 YARVRTSAQHFLIMQFGLSAFHWNVEDSCYQAQTFNFYTFPRSNGGSDVRFTCQASSLDFLR 186          
BLAST of mRNA_H-paniculata_contig10508.329.1 vs. uniprot
Match: A0A2K1KWH0_PHYPA (Uncharacterized protein n=4 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KWH0_PHYPA)

HSP 1 Score: 57.0 bits (136), Expect = 7.490e-8
Identity = 25/62 (40.32%), Postives = 39/62 (62.90%), Query Frame = 1
Query:   10 YDGGRSSASSFMLTQYGVCCFRFKDEDGSLEARPFNAFVFPSTKFRTDRVFSCQSSSMDFLR 195
            Y   R+SA  F++ Q+G+  F +  ED   +A+ FN + FP +   +D  F+CQ+SS+DFLR
Sbjct:   52 YARVRTSAQHFLIMQFGLSAFHWNVEDSCYQAQTFNFYTFPRSNGGSDVRFTCQASSLDFLR 113          
BLAST of mRNA_H-paniculata_contig10508.329.1 vs. uniprot
Match: A0A498NWX0_LABRO (Poly(A)-specific ribonuclease PARN isoform X2 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498NWX0_LABRO)

HSP 1 Score: 54.7 bits (130), Expect = 1.050e-7
Identity = 26/64 (40.62%), Postives = 37/64 (57.81%), Query Frame = 1
Query:    7 RYDGGRSSASSFMLTQYGVCCFRFKDEDGSLEARPFNAFVFPSTKFRT--DRVFSCQSSSMDFL 192
            RY   R  + +F+L Q+G+C FR+     +   + FN ++FP    RT  D  F CQSSS+DFL
Sbjct:   11 RYTKLRKHSMNFLLLQFGLCTFRYDQNQSTYVTKAFNFYIFPKPFSRTSPDIKFICQSSSIDFL 74          
BLAST of mRNA_H-paniculata_contig10508.329.1 vs. uniprot
Match: L7X1H3_HELEA (Poly(A)-specific ribonuclease PARN-like protein n=1 Tax=Heliconius erato TaxID=33431 RepID=L7X1H3_HELEA)

HSP 1 Score: 56.2 bits (134), Expect = 1.400e-7
Identity = 25/64 (39.06%), Postives = 39/64 (60.94%), Query Frame = 1
Query:    1 QMRYDGGRSSASSFMLTQYGVCCFRFKDEDGSLEARPFNAFVFPSTKFRTDRVFSCQSSSMDFL 192
            Q  Y+   + ++ F+L QYG+C F + DE+       +N F+FP  +   D++F CQSSS+DFL
Sbjct:   47 QEYYNTLLNGSTDFLLIQYGLCAFYWNDEEKHYMNDAYNFFLFPRGRPGPDKIFLCQSSSLDFL 110          
BLAST of mRNA_H-paniculata_contig10508.329.1 vs. uniprot
Match: A0A673J6J5_9TELE (Poly(A)-specific ribonuclease n=3 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=A0A673J6J5_9TELE)

HSP 1 Score: 55.8 bits (133), Expect = 1.910e-7
Identity = 27/64 (42.19%), Postives = 38/64 (59.38%), Query Frame = 1
Query:    7 RYDGGRSSASSFMLTQYGVCCFRFKDEDGSLEARPFNAFVFPSTKFRT--DRVFSCQSSSMDFL 192
            RY   R  + +F+L Q+G+C FR++    S   + FN ++FP    RT  D  F CQSSS+DFL
Sbjct:   55 RYTKLRKHSMNFLLFQFGLCTFRYEQNQSSYITKAFNFYIFPKPFSRTSPDIKFICQSSSIDFL 118          
BLAST of mRNA_H-paniculata_contig10508.329.1 vs. uniprot
Match: A0A8C2HJA5_CYPCA (Poly(A)-specific ribonuclease (deadenylation nuclease) n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2HJA5_CYPCA)

HSP 1 Score: 55.5 bits (132), Expect = 2.640e-7
Identity = 27/64 (42.19%), Postives = 37/64 (57.81%), Query Frame = 1
Query:    7 RYDGGRSSASSFMLTQYGVCCFRFKDEDGSLEARPFNAFVFPSTKFRT--DRVFSCQSSSMDFL 192
            RY   R  + +F+L Q+GVC FR+     +   + FN ++FP    RT  D  F CQSSS+DFL
Sbjct:   53 RYTKLRKHSMNFLLFQFGVCTFRYDQNQSTYVTKAFNFYIFPKPFSRTSPDIKFICQSSSIDFL 116          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10508.329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNN0_ECTSI1.370e-2068.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6F9DPQ5_9ASCI1.290e-944.62Poly(A)-specific ribonuclease PARN n=1 Tax=Phallus... [more]
A0A507EAB4_9FUNG1.760e-945.59Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]
F6PI67_CIOIN2.920e-841.18Poly(A)-specific ribonuclease PARN n=2 Tax=Ciona i... [more]
UPI000D166FB07.440e-840.32poly(A)-specific ribonuclease PARN-like isoform X4... [more]
A0A2K1KWH0_PHYPA7.490e-840.32Uncharacterized protein n=4 Tax=Physcomitrium pate... [more]
A0A498NWX0_LABRO1.050e-740.63Poly(A)-specific ribonuclease PARN isoform X2 n=1 ... [more]
L7X1H3_HELEA1.400e-739.06Poly(A)-specific ribonuclease PARN-like protein n=... [more]
A0A673J6J5_9TELE1.910e-742.19Poly(A)-specific ribonuclease n=3 Tax=Sinocycloche... [more]
A0A8C2HJA5_CYPCA2.640e-742.19Poly(A)-specific ribonuclease (deadenylation nucle... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10508contigH-paniculata_contig10508:154..354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.4
Seed ortholog evalue7e-16
Seed eggNOG ortholog2880.D7FNN0
KEGG koko:K01148,ko:K13202
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryother localisation
EggNOG free text desc.poly(A)-specific ribonuclease activity
EggNOG OGsKOG1990@1,KOG1990@2759
EC3.1.13.4
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03041
Exons1
Model size201
Cds size198
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928753.130883-CDS-H-paniculata_contig10508:153..3511622928753.130883-CDS-H-paniculata_contig10508:153..351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10508 154..351 -
1691480606.4113789-CDS-H-paniculata_contig10508:153..3511691480606.4113789-CDS-H-paniculata_contig10508:153..351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10508 154..351 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928753.1413767-UTR-H-paniculata_contig10508:351..3541622928753.1413767-UTR-H-paniculata_contig10508:351..354Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10508 352..354 -
1691480606.4222124-UTR-H-paniculata_contig10508:351..3541691480606.4222124-UTR-H-paniculata_contig10508:351..354Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10508 352..354 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10508.329.1prot_H-paniculata_contig10508.329.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10508 154..351 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10508.329.1

>prot_H-paniculata_contig10508.329.1 ID=prot_H-paniculata_contig10508.329.1|Name=mRNA_H-paniculata_contig10508.329.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
MRYDGGRSSASSFMLTQYGVCCFRFKDEDGSLEARPFNAFVFPSTKFRTD
RVFSCQSSSMDFLRYN
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mRNA from alignment at H-paniculata_contig10508:154..354-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10508.329.1 ID=mRNA_H-paniculata_contig10508.329.1|Name=mRNA_H-paniculata_contig10508.329.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=201bp|location=Sequence derived from alignment at H-paniculata_contig10508:154..354- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATGCGCTATGATGGAGGGCGTTCCTCAGCATCCTCTTTCATGCTGAC ACAGTACGGGGTCTGCTGCTTCCGCTTTAAAGACGAGGACGGTAGCCTGG AGGCGCGACCTTTCAACGCGTTCGTGTTCCCGTCTACCAAATTTAGGACG GACCGAGTGTTCTCGTGTCAGTCCTCGTCCATGGATTTTTTAAGGTACAA T
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Coding sequence (CDS) from alignment at H-paniculata_contig10508:154..354-

>mRNA_H-paniculata_contig10508.329.1 ID=mRNA_H-paniculata_contig10508.329.1|Name=mRNA_H-paniculata_contig10508.329.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig10508:154..354- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCTATGATGGAGGGCGTTCCTCAGCATCCTCTTTCATGCTGACACA
GTACGGGGTCTGCTGCTTCCGCTTTAAAGACGAGGACGGTAGCCTGGAGG
CGCGACCTTTCAACGCGTTCGTGTTCCCGTCTACCAAATTTAGGACGGAC
CGAGTGTTCTCGTGTCAGTCCTCGTCCATGGATTTTTTAAGGTACAATAT
GCGCTATGATGGAGGGCGTTCCTCAGCATCCTCTTTCATGCTGACACAGT
ACGGGGTCTGCTGCTTCCGCTTTAAAGACGAGGACGGTAGCCTGGAGGCG
CGACCTTTCAACGCGTTCGTGTTCCCGTCTACCAAATTTAGGACGGACCG
AGTGTTCTCGTGTCAGTCCTCGTCCATGGATTTTTTAAGGTACAAT
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