mRNA_H-paniculata_contig15662.3287.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15662.3287.1
Unique NamemRNA_H-paniculata_contig15662.3287.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15662.3287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15662contigH-paniculata_contig15662:2314..2806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size493
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15662.3287.1prot_H-paniculata_contig15662.3287.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15662 2356..2691 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929250.6620982-UTR-H-paniculata_contig15662:2313..23551622929250.6620982-UTR-H-paniculata_contig15662:2313..2355Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15662 2314..2355 +
1691480787.5683503-UTR-H-paniculata_contig15662:2313..23551691480787.5683503-UTR-H-paniculata_contig15662:2313..2355Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15662 2314..2355 +
1622929250.6914175-UTR-H-paniculata_contig15662:2691..28061622929250.6914175-UTR-H-paniculata_contig15662:2691..2806Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15662 2692..2806 +
1691480787.5913906-UTR-H-paniculata_contig15662:2691..28061691480787.5913906-UTR-H-paniculata_contig15662:2691..2806Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15662 2692..2806 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929250.6789153-CDS-H-paniculata_contig15662:2355..26911622929250.6789153-CDS-H-paniculata_contig15662:2355..2691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15662 2356..2691 +
1691480787.581849-CDS-H-paniculata_contig15662:2355..26911691480787.581849-CDS-H-paniculata_contig15662:2355..2691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15662 2356..2691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15662.3287.1

>prot_H-paniculata_contig15662.3287.1 ID=prot_H-paniculata_contig15662.3287.1|Name=mRNA_H-paniculata_contig15662.3287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
MSVWHVKQGNFMDIRSKFFVSNIDHQTECNQPRTSQHSVMEISSVELYIY
ILNPGKIRIFGVFVTKMKNYSPEFQNELEYSMCPRPSTTANNVLLNRMDN
DGYFIRCIRSF*
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mRNA from alignment at H-paniculata_contig15662:2314..2806+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15662.3287.1 ID=mRNA_H-paniculata_contig15662.3287.1|Name=mRNA_H-paniculata_contig15662.3287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=493bp|location=Sequence derived from alignment at H-paniculata_contig15662:2314..2806+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGACAGACACGAACAACTTTCCTCCACATGATAGACGACTAATGTCGGT
ATGGCACGTTAAGCAGGGAAATTTTATGGATATTCGTTCCAAATTTTTCG
TCTCGAATATTGATCATCAGACAGAATGCAACCAACCGAGGACGAGCCAA
CACTCTGTCATGGAAATATCATCTGTTGAGCTATATATATATATATTAAA
CCCCGGAAAAATACGAATATTTGGTGTATTTGTCACGAAAATGAAAAATT
ATTCGCCTGAGTTTCAGAATGAGCTCGAGTATTCTATGTGCCCCCGACCA
TCCACGACTGCTAATAATGTACTCCTAAATCGAATGGACAATGATGGGTA
CTTCATTCGATGTATCCGCTCATTCTGAAACTTGAGTGATGAATACTTTC
ATTGTTTTATGAAAACCATTTGCAAGTATTCGTATTCTTGTCCGGGGGGG
GGGGGGGGGTACAATATAATATTTCCAAGTAGAGGGCGTGAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig15662:2314..2806+

>mRNA_H-paniculata_contig15662.3287.1 ID=mRNA_H-paniculata_contig15662.3287.1|Name=mRNA_H-paniculata_contig15662.3287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig15662:2314..2806+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGGTATGGCACGTTAAGCAGGGAAATTTTATGGATATTCGTTCCAA
ATTTTTCGTCTCGAATATTGATCATCAGACAGAATGCAACCAACCGAGGA
CGAGCCAACACTCTGTCATGGAAATATCATCTGTTGAGCTATATATATAT
ATATTAAACCCCGGAAAAATACGAATATTTGGTGTATTTGTCACGAAAAT
GAAAAATTATTCGCCTGAGTTTCAGAATGAGCTCGAGTATTCTATGTGCC
CCCGACCATCCACGACTGCTAATAATGTACTCCTAAATCGAATGGACAAT
GATGGGTACTTCATTCGATGTATCCGCTCATTCTGAATGTCGGTATGGCA
CGTTAAGCAGGGAAATTTTATGGATATTCGTTCCAAATTTTTCGTCTCGA
ATATTGATCATCAGACAGAATGCAACCAACCGAGGACGAGCCAACACTCT
GTCATGGAAATATCATCTGTTGAGCTATATATATATATATTAAACCCCGG
AAAAATACGAATATTTGGTGTATTTGTCACGAAAATGAAAAATTATTCGC
CTGAGTTTCAGAATGAGCTCGAGTATTCTATGTGCCCCCGACCATCCACG
ACTGCTAATAATGTACTCCTAAATCGAATGGACAATGATGGGTACTTCAT
TCGATGTATCCGCTCATTCTGA
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