mRNA_H-paniculata_contig15655.3282.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15655.3282.1
Unique NamemRNA_H-paniculata_contig15655.3282.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15655.3282.1 vs. uniprot
Match: A0A836CP36_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP36_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 8.570e-7
Identity = 32/96 (33.33%), Postives = 50/96 (52.08%), Query Frame = 1 
Query:    1 MLLVSLDGRDVTGATFDFVMEKMMAIPSGTSIDLVFR----DPSVPVXXXXXXXXXXXAKTCEITVYGPDGKPVVVTAKDGDNLRRVLLDAKINVY 276
            M+LVSL+G D T   FD +M+ ++       I L F     D  +P               CE+ V  P G+ +V+ A++GDNLR+VL+  K+++Y
Sbjct:   85 MVLVSLNGIDCTTKDFDTIMDMLIGATDSQPIQLSFSLEVDDEQIP--------QPIKTGPCELHVLLPKGETMVLKARNGDNLRKVLMAGKVSIY 172
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15655.3282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CP36_9STRA8.570e-733.332Fe-2S ferredoxin-type domain-containing protein n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15655contigH-paniculata_contig15655:5703..5978 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.8
Seed ortholog evalue9.5e-11
Seed eggNOG ortholog2880.D8LDD4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain present in PSD-95, Dlg, and ZO-1/2.
EggNOG OGs2DJ3Z@1,2S5ZV@2759
Ec32 ortholog descriptionPDZ domain
Ec32 orthologEc-25_001670.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size276
Cds size276
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929250.069737-CDS-H-paniculata_contig15655:5702..59781622929250.069737-CDS-H-paniculata_contig15655:5702..5978Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15655 5703..5978 +
1691480787.2849972-CDS-H-paniculata_contig15655:5702..59781691480787.2849972-CDS-H-paniculata_contig15655:5702..5978Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15655 5703..5978 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15655.3282.1prot_H-paniculata_contig15655.3282.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15655 5703..5978 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15655.3282.1

>prot_H-paniculata_contig15655.3282.1 ID=prot_H-paniculata_contig15655.3282.1|Name=mRNA_H-paniculata_contig15655.3282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
MLLVSLDGRDVTGATFDFVMEKMMAIPSGTSIDLVFRDPSVPVPTPPPPP
PPPPAKTCEITVYGPDGKPVVVTAKDGDNLRRVLLDAKINVY
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mRNA from alignment at H-paniculata_contig15655:5703..5978+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15655.3282.1 ID=mRNA_H-paniculata_contig15655.3282.1|Name=mRNA_H-paniculata_contig15655.3282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=276bp|location=Sequence derived from alignment at H-paniculata_contig15655:5703..5978+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGCTGGTGTCCCTCGACGGGCGTGATGTCACCGGCGCCACGTTTGA
CTTCGTGATGGAGAAGATGATGGCCATCCCATCTGGCACGTCGATAGATC
TCGTGTTCCGCGATCCCTCGGTACCCGTGCCGACTCCGCCGCCGCCGCCC
CCCCCACCGCCGGCCAAGACATGCGAGATTACCGTTTATGGTCCGGATGG
AAAGCCGGTCGTAGTCACTGCCAAGGATGGGGATAATCTGCGCAGGGTGT
TGCTGGACGCGAAGATAAATGTGTAT
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Coding sequence (CDS) from alignment at H-paniculata_contig15655:5703..5978+

>mRNA_H-paniculata_contig15655.3282.1 ID=mRNA_H-paniculata_contig15655.3282.1|Name=mRNA_H-paniculata_contig15655.3282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig15655:5703..5978+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGCTGGTGTCCCTCGACGGGCGTGATGTCACCGGCGCCACGTTTGA
CTTCGTGATGGAGAAGATGATGGCCATCCCATCTGGCACGTCGATAGATC
TCGTGTTCCGCGATCCCTCGGTACCCGTGCCGACTCCGCCGCCGCCGCCC
CCCCCACCGCCGGCCAAGACATGCGAGATTACCGTTTATGGTCCGGATGG
AAAGCCGGTCGTAGTCACTGCCAAGGATGGGGATAATCTGCGCAGGGTGT
TGCTGGACGCGAAGATAAATGTGTATATGCTGCTGGTGTCCCTCGACGGG
CGTGATGTCACCGGCGCCACGTTTGACTTCGTGATGGAGAAGATGATGGC
CATCCCATCTGGCACGTCGATAGATCTCGTGTTCCGCGATCCCTCGGTAC
CCGTGCCGACTCCGCCGCCGCCGCCCCCCCCACCGCCGGCCAAGACATGC
GAGATTACCGTTTATGGTCCGGATGGAAAGCCGGTCGTAGTCACTGCCAA
GGATGGGGATAATCTGCGCAGGGTGTTGCTGGACGCGAAGATAAATGTGT
AT
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