mRNA_H-paniculata_contig15534.3233.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15534.3233.1
Unique NamemRNA_H-paniculata_contig15534.3233.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig15534.3233.1 vs. uniprot
Match: D8LET7_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LET7_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 1.660e-34
Identity = 65/77 (84.42%), Postives = 68/77 (88.31%), Query Frame = 1
Query:    1 MVPPDYVKKLEGNIPEEFKNLPRLLGRASVEFVMEKPGKEKFDVGGVLYDKVRLVMVLDGFTAPVTAGTIMDLVLRG 231
            MVPPDY KKLE NIP +F +LPRLLGRASVEFVMEKP  EKFDV GVLYDKVRL MVLDGFTAPVTAGTI+DLV RG
Sbjct:  227 MVPPDYTKKLEANIPGDFDSLPRLLGRASVEFVMEKPKGEKFDVAGVLYDKVRLTMVLDGFTAPVTAGTIIDLVQRG 303          
BLAST of mRNA_H-paniculata_contig15534.3233.1 vs. uniprot
Match: A0A836CBT3_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBT3_9STRA)

HSP 1 Score: 110 bits (275), Expect = 5.740e-27
Identity = 53/78 (67.95%), Postives = 64/78 (82.05%), Query Frame = 1
Query:    1 MVPPDYVKKLEGNIPEEFKNLPRLLGRASVEFVMEKPGK-EKFDVGGVLYDKVRLVMVLDGFTAPVTAGTIMDLVLRG 231
            MVP DYVK+LE NIP EF  LPRLLGRA+VEFV+EKP K +KFDV G LYD+ +LVMV+DG+ AP+TAG  +DLV +G
Sbjct:  185 MVPADYVKELEANIPSEFDKLPRLLGRATVEFVLEKPTKGDKFDVEGTLYDQAKLVMVIDGYNAPITAGCFLDLVQKG 262          
BLAST of mRNA_H-paniculata_contig15534.3233.1 vs. uniprot
Match: M1USH1_CYAM1 (Peptidylprolyl isomerase n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1USH1_CYAM1)

HSP 1 Score: 86.7 bits (213), Expect = 4.350e-18
Identity = 42/75 (56.00%), Postives = 56/75 (74.67%), Query Frame = 1
Query:   19 VKKLEGNIPEEFKNLPRLLGRASVEFVMEKPGKE----KFDVGGVLYDKVRLVMVLDGFTAPVTAGTIMDLVLRG 231
            VK     +PEE+ +LP+LLGRA+VEFV+ K G+E    +FD+ G LYD+ RLVMV+DG++APVT G  +DLV RG
Sbjct:  232 VKGFPFQVPEEYSHLPQLLGRATVEFVLRKSGEEGSPKQFDIDGNLYDRARLVMVVDGYSAPVTGGNFVDLVSRG 306          
BLAST of mRNA_H-paniculata_contig15534.3233.1 vs. uniprot
Match: A0A7S0VRL2_9CRYP (Peptidylprolyl isomerase n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VRL2_9CRYP)

HSP 1 Score: 84.3 bits (207), Expect = 2.930e-17
Identity = 37/65 (56.92%), Postives = 51/65 (78.46%), Query Frame = 1
Query:   37 NIPEEFKNLPRLLGRASVEFVMEKPGKEKFDVGGVLYDKVRLVMVLDGFTAPVTAGTIMDLVLRG 231
            ++PEEF NLP+L GRA V+ V+ K G EKFDV G +YDK+ L +VLDG++APVT G ++DL+ +G
Sbjct:  245 DVPEEFSNLPQLKGRAEVDVVLAKAGGEKFDVDGTVYDKLNLHIVLDGYSAPVTTGNLVDLIQKG 309          
BLAST of mRNA_H-paniculata_contig15534.3233.1 vs. uniprot
Match: A0A7J7IIK0_9RHOD (Peptidylprolyl isomerase n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IIK0_9RHOD)

HSP 1 Score: 84.0 bits (206), Expect = 3.560e-17
Identity = 39/75 (52.00%), Postives = 55/75 (73.33%), Query Frame = 1
Query:   19 VKKLEGNIPEEFKNLPRLLGRASVEFVMEKPGK----EKFDVGGVLYDKVRLVMVLDGFTAPVTAGTIMDLVLRG 231
            VK+    +PEE+ +LP+LLGR +VE ++ K G+    ++FD+ G LYDK RLV+V+DG++APVT G  MDLV RG
Sbjct:  194 VKEFPFQVPEEYSHLPQLLGRGTVEIILRKSGENGSPKQFDIDGNLYDKARLVLVIDGYSAPVTGGNFMDLVSRG 268          
BLAST of mRNA_H-paniculata_contig15534.3233.1 vs. uniprot
Match: A0A5J4YQC6_PORPP (Peptidylprolyl isomerase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YQC6_PORPP)

HSP 1 Score: 82.8 bits (203), Expect = 9.990e-17
Identity = 37/71 (52.11%), Postives = 51/71 (71.83%), Query Frame = 1
Query:   19 VKKLEGNIPEEFKNLPRLLGRASVEFVMEKPGKEKFDVGGVLYDKVRLVMVLDGFTAPVTAGTIMDLVLRG 231
            V K    IP E+KNLP L GRA+VE  + +P K +FD+GG L+D+ ++ MV+DGF+AP+T G  +DLV RG
Sbjct:  225 VDKFPYEIPSEYKNLPVLKGRATVEVTVRRPEKRQFDIGGELFDEGKMTMVIDGFSAPITGGNFVDLVQRG 295          
BLAST of mRNA_H-paniculata_contig15534.3233.1 vs. uniprot
Match: A0A6T5MD62_HETAK (Peptidylprolyl isomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5MD62_HETAK)

HSP 1 Score: 81.3 bits (199), Expect = 3.610e-16
Identity = 42/80 (52.50%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    1 MVPPDYVKKLEGNIPEEFKNLPRLLGRASVEFVMEKPGKE---KFDVGGVLYDKVRLVMVLDGFTAPVTAGTIMDLVLRG 231
            MVP ++ ++    +PEE+  LPRL GRA+VE V+ K  ++   KFDV G LYD+ RLV+ LDG+ APV+AGT+MDLV +G
Sbjct:  228 MVPENFARE----VPEEYAGLPRLNGRATVEMVLVKGPEDEDGKFDVEGTLYDECRLVLTLDGYNAPVSAGTVMDLVDKG 303          
BLAST of mRNA_H-paniculata_contig15534.3233.1 vs. uniprot
Match: A0A7S2XWD4_9STRA (Peptidylprolyl isomerase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWD4_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.070e-15
Identity = 42/74 (56.76%), Postives = 50/74 (67.57%), Query Frame = 1
Query:    1 MVPPDYVKKLEGNIPEEFKNLPRLLGRASVEFVMEKPGKEKFDVGGVLYDKVRLVMVLDGFTAPVTAGTIMDLV 222
            MVP  Y    + N+PEE+K LP+L GR +VEFV  K     FDV G L  + +L MVLDG+TAPVTAG IMDLV
Sbjct:  247 MVPDGY----KVNVPEEYKGLPQLQGRGTVEFVFVKEDGRPFDVEGNLVQEAKLTMVLDGYTAPVTAGNIMDLV 316          
BLAST of mRNA_H-paniculata_contig15534.3233.1 vs. uniprot
Match: A0A2V3J2S0_9FLOR (Peptidylprolyl isomerase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2S0_9FLOR)

HSP 1 Score: 77.8 bits (190), Expect = 1.630e-15
Identity = 34/71 (47.89%), Postives = 53/71 (74.65%), Query Frame = 1
Query:   19 VKKLEGNIPEEFKNLPRLLGRASVEFVMEKPGKEKFDVGGVLYDKVRLVMVLDGFTAPVTAGTIMDLVLRG 231
            V +    IPEE+ +LPRL+GRA+VE V++K   E FD+ G +Y + ++ +VLDG++AP++AGT +DLV +G
Sbjct:   35 VSEFPFKIPEEYSSLPRLMGRATVELVVKKAEDEPFDIEGTIYKEGKMTLVLDGYSAPLSAGTFLDLVNKG 105          
BLAST of mRNA_H-paniculata_contig15534.3233.1 vs. uniprot
Match: A0A0G4EJ74_VITBC (Peptidylprolyl isomerase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EJ74_VITBC)

HSP 1 Score: 79.3 bits (194), Expect = 1.780e-15
Identity = 40/77 (51.95%), Postives = 55/77 (71.43%), Query Frame = 1
Query:    1 MVPPDYVKKLEGNIPEEFKNLPRLLGRASVEFVMEKPGKEKFDVGGVLYDKVRLVMVLDGFTAPVTAGTIMDLVLRG 231
            MVP +Y    +  +P+EF +LP+L GRA VE V++K    KFD+ G LYD+ +LVMV+DG+ APVTAG  +DLV +G
Sbjct:  238 MVPENY----KVPVPQEFASLPQLQGRAKVEMVVKKADGSKFDLEGRLYDEAKLVMVVDGWNAPVTAGNFVDLVSKG 310          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15534.3233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LET7_ECTSI1.660e-3484.42Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
A0A836CBT3_9STRA5.740e-2767.95Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
M1USH1_CYAM14.350e-1856.00Peptidylprolyl isomerase n=1 Tax=Cyanidioschyzon m... [more]
A0A7S0VRL2_9CRYP2.930e-1756.92Peptidylprolyl isomerase n=1 Tax=Hemiselmis tepida... [more]
A0A7J7IIK0_9RHOD3.560e-1752.00Peptidylprolyl isomerase n=1 Tax=Cyanidiococcus ya... [more]
A0A5J4YQC6_PORPP9.990e-1752.11Peptidylprolyl isomerase n=1 Tax=Porphyridium purp... [more]
A0A6T5MD62_HETAK3.610e-1652.50Peptidylprolyl isomerase n=1 Tax=Heterosigma akash... [more]
A0A7S2XWD4_9STRA1.070e-1556.76Peptidylprolyl isomerase (Fragment) n=1 Tax=Fibroc... [more]
A0A2V3J2S0_9FLOR1.630e-1547.89Peptidylprolyl isomerase n=1 Tax=Gracilariopsis ch... [more]
A0A0G4EJ74_VITBC1.780e-1551.95Peptidylprolyl isomerase n=2 Tax=Vitrella brassica... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15534contigH-paniculata_contig15534:5387..5894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.3
Seed ortholog evalue2e-28
Seed eggNOG ortholog2880.D8LET7
Preferred nameTLP40
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006952,GO:0008150,GO:0009507,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0016020,GO:0031976,GO:0031977,GO:0031984,GO:0034357,GO:0042651,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051704,GO:0051707,GO:0055035,GO:0098542
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGs2QSSP@2759,COG0652@1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size246
Cds size246
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929243.6455755-CDS-H-paniculata_contig15534:5386..54731622929243.6455755-CDS-H-paniculata_contig15534:5386..5473Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15534 5387..5473 +
1691480784.5710561-CDS-H-paniculata_contig15534:5386..54731691480784.5710561-CDS-H-paniculata_contig15534:5386..5473Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15534 5387..5473 +
1622929243.6613648-CDS-H-paniculata_contig15534:5735..58941622929243.6613648-CDS-H-paniculata_contig15534:5735..5894Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15534 5736..5894 +
1691480784.5888097-CDS-H-paniculata_contig15534:5735..58941691480784.5888097-CDS-H-paniculata_contig15534:5735..5894Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15534 5736..5894 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15534.3233.1prot_H-paniculata_contig15534.3233.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15534 5387..5894 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15534.3233.1

>prot_H-paniculata_contig15534.3233.1 ID=prot_H-paniculata_contig15534.3233.1|Name=mRNA_H-paniculata_contig15534.3233.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
MVPPDYVKKLEGNIPEEFKNLPRLLGRASVEFVMEKPGKEKFDVGGVLYD
KVRLVMVLDGFTAPVTAGTIMDLVLRGELGS*
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mRNA from alignment at H-paniculata_contig15534:5387..5894+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15534.3233.1 ID=mRNA_H-paniculata_contig15534.3233.1|Name=mRNA_H-paniculata_contig15534.3233.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=508bp|location=Sequence derived from alignment at H-paniculata_contig15534:5387..5894+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGCCCCCTGACTACGTGAAGAAACTGGAGGGGAATATTCCTGAAGA GTTCAAAAATCTACCGCGATTGCTGGGACGTGCATCGGTGAGCCTCGGGA CGGCTTTTTTTTTTTTTTGTCATTCACGTTCATCCTACTTTTTACCGTTG TTTTCAAATCCCTGGCGGGGACATTGGGAGGCGTCGTGATGGTTGTCTTC CTAATCACTGTGAGTCTAGTTGTTTGGTCAGACCCGCGGTTAGAGGTACA TGAAGCGGGGCTAGGCGAAAGCAGTAATTTTACATGCATATATTTATATG TTATTGCTACAATAACGTGTCATCTTTGACGACGCCGTCCTCCGTGCAGG TGGAGTTTGTAATGGAGAAACCGGGAAAAGAGAAATTTGATGTTGGCGGC GTTCTGTACGACAAGGTTCGGCTCGTTATGGTCCTTGACGGATTCACCGC CCCCGTCACGGCGGGCACGATCATGGACCTGGTCCTGAGAGGTGAGTTGG GAAGCTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig15534:5387..5894+

>mRNA_H-paniculata_contig15534.3233.1 ID=mRNA_H-paniculata_contig15534.3233.1|Name=mRNA_H-paniculata_contig15534.3233.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig15534:5387..5894+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGCCCCCTGACTACGTGAAGAAACTGGAGGGGAATATTCCTGAAGA
GTTCAAAAATCTACCGCGATTGCTGGGACGTGCATCGATGGTGCCCCCTG
ACTACGTGAAGAAACTGGAGGGGAATATTCCTGAAGAGTTCAAAAATCTA
CCGCGATTGCTGGGACGTGCATCGGTGGAGTTTGTAATGGAGAAACCGGG
AAAAGAGAAATTTGATGTTGGCGGCGTTCTGTACGACAAGGTTCGGCTCG
TTATGGTCCTTGACGGATTCACCGCCCCCGTCACGGCGGGCACGATCATG
GACCTGGTCCTGAGAGGTGAGTTGGGAAGCTAGGTGGAGTTTGTAATGGA
GAAACCGGGAAAAGAGAAATTTGATGTTGGCGGCGTTCTGTACGACAAGG
TTCGGCTCGTTATGGTCCTTGACGGATTCACCGCCCCCGTCACGGCGGGC
ACGATCATGGACCTGGTCCTGAGAGGTGAGTTGGGAAGCTAG
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