mRNA_H-paniculata_contig15468.3197.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15468.3197.1
Unique NamemRNA_H-paniculata_contig15468.3197.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15468.3197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15468contigH-paniculata_contig15468:2216..2598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size383
Cds size324
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929237.4342906-UTR-H-paniculata_contig15468:2215..22741622929237.4342906-UTR-H-paniculata_contig15468:2215..2274Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15468 2216..2274 +
1691480782.4554853-UTR-H-paniculata_contig15468:2215..22741691480782.4554853-UTR-H-paniculata_contig15468:2215..2274Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15468 2216..2274 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929237.4474394-CDS-H-paniculata_contig15468:2274..25981622929237.4474394-CDS-H-paniculata_contig15468:2274..2598Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15468 2275..2598 +
1691480782.4659808-CDS-H-paniculata_contig15468:2274..25981691480782.4659808-CDS-H-paniculata_contig15468:2274..2598Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15468 2275..2598 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15468.3197.1prot_H-paniculata_contig15468.3197.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15468 2275..2598 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15468.3197.1

>prot_H-paniculata_contig15468.3197.1 ID=prot_H-paniculata_contig15468.3197.1|Name=mRNA_H-paniculata_contig15468.3197.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
MVTLQMVTRWSYTRRKVTHAGSVYFLDGTVQIKYSIFCPSFSMLHGMSST
LHVIRVTWTSSPTQTDTVFIPYFSYLFVSYIRICLGRKIFRVSTITIAVL
IPYASDS*
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mRNA from alignment at H-paniculata_contig15468:2216..2598+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15468.3197.1 ID=mRNA_H-paniculata_contig15468.3197.1|Name=mRNA_H-paniculata_contig15468.3197.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=383bp|location=Sequence derived from alignment at H-paniculata_contig15468:2216..2598+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGAACTATCATTATTTGTCTAGTGTAAATACGTATTTATCCGTTTATA
AGTCTATGAATGGTCACTCTACAAATGGTCACCAGGTGGTCGTATACCCG
GCGAAAAGTCACACATGCAGGTTCCGTTTATTTTTTGGATGGTACTGTAC
AGATAAAATACTCAATTTTCTGCCCGAGCTTTTCAATGCTCCATGGTATG
TCGAGTACACTGCATGTTATTCGCGTCACATGGACATCTTCCCCAACTCA
AACAGATACAGTATTCATTCCATATTTCTCGTATTTGTTTGTGTCTTATA
TTCGTATTTGTCTGGGGCGTAAAATATTTCGAGTGTCAACGATAACTATC
GCTGTGTTAATACCTTATGCGTCCGATTCTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig15468:2216..2598+

>mRNA_H-paniculata_contig15468.3197.1 ID=mRNA_H-paniculata_contig15468.3197.1|Name=mRNA_H-paniculata_contig15468.3197.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig15468:2216..2598+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCACTCTACAAATGGTCACCAGGTGGTCGTATACCCGGCGAAAAGT
CACACATGCAGGTTCCGTTTATTTTTTGGATGGTACTGTACAGATAAAAT
ACTCAATTTTCTGCCCGAGCTTTTCAATGCTCCATGGTATGTCGAGTACA
CTGCATGTTATTCGCGTCACATGGACATCTTCCCCAACTCAAACAGATAC
AGTATTCATTCCATATTTCTCGTATTTGTTTGTGTCTTATATTCGTATTT
GTCTGGGGCGTAAAATATTTCGAGTGTCAACGATAACTATCGCTGTGTTA
ATACCTTATGCGTCCGATTCTTAGATGGTCACTCTACAAATGGTCACCAG
GTGGTCGTATACCCGGCGAAAAGTCACACATGCAGGTTCCGTTTATTTTT
TGGATGGTACTGTACAGATAAAATACTCAATTTTCTGCCCGAGCTTTTCA
ATGCTCCATGGTATGTCGAGTACACTGCATGTTATTCGCGTCACATGGAC
ATCTTCCCCAACTCAAACAGATACAGTATTCATTCCATATTTCTCGTATT
TGTTTGTGTCTTATATTCGTATTTGTCTGGGGCGTAAAATATTTCGAGTG
TCAACGATAACTATCGCTGTGTTAATACCTTATGCGTCCGATTCTTAG
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